mRNA_D-dichotoma_M_contig969.20375.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig969.20375.1
Unique NamemRNA_D-dichotoma_M_contig969.20375.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
[Close]
BLAST of mRNA_D-dichotoma_M_contig969.20375.1 vs. uniprot
Match: A0A6H5LCY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCY2_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 2.600e-67
Identity = 123/172 (71.51%), Postives = 140/172 (81.40%), Query Frame = 1 
Query:    1 EIAGTLHDRGSLVIAMESTVSFNIKHIKDVLGEVNLFLEEFPITSVYLSKLAGRTATDRKLH-YTRQSSSVLVAHKSSEFTCHAPGPQFDPPRTTQLEAVGMVVSPKHPPPATFLAPAMADHLLSRFTSAADKVLITAFEHNPLATLVLTGGRRLCALVGNPAKVDTAERQV 513
            EIAGTL DRGSL IAMESTVSFN KH+ D L E  L LE FP+TSVYL+KLAGRT TD K   YTRQ++SVLVAHK+ E T HA GPQFDPPR +QLEAVG+++S KHP  ATFLAP+MADHLL+RFTSA DKVL++AFE N LA+LVLT GRRL ALVG+PAK  +  RQV
Sbjct:  581 EIAGTLDDRGSLAIAMESTVSFNYKHMTDSLKEAGLALEAFPVTSVYLNKLAGRTPTDSKQRKYTRQTASVLVAHKTGEHTSHASGPQFDPPRISQLEAVGIIISQKHPS-ATFLAPSMADHLLNRFTSAGDKVLVSAFEDNNLASLVLTSGRRLFALVGDPAKAVSVGRQV 751
[Close]
BLAST of mRNA_D-dichotoma_M_contig969.20375.1 vs. uniprot
Match: D8LKD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD6_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 4.250e-36
Identity = 81/183 (44.26%), Postives = 105/183 (57.38%), Query Frame = 1 
Query:    4 IAGTLHDRGSLVIAMESTVSFNIKHIKDVLGEVNLFLEEFPITSVYLSKLAGRTATDRKLHYTRQSSSVLVAHKSSEFTCH-------------APGPQFDPPRTTQLEAVGMVVSPKHPPPATFLAPAMADHLLSRFTSAADKVLITAFEHNPLATLVLTGGRRLCALVGNPAKVDTAERQV 513
            +   LH RG++VIAM S  +F+   ++  L   +L +E+ P+ S+YL    GR     K H T Q  SVLVAHK+++F CH             A    F  PR    EAVG VVS KHP  ATFL+ + ADHL++RFT   D VL+T FE NPLA+LVL  GR L ALV +  K + AE +V
Sbjct:  104 LESVLHPRGTVVIAMGSIANFDFPCMEARLKAADLAMEKNPVVSIYLEGQPGRIPERLKNHLTTQGCSVLVAHKTNDFACHGHPLGKRRAARGAASSASFKSPRQASFEAVGFVVSDKHPSTATFLSTSTADHLINRFTVPGDCVLVTTFEENPLASLVLGQGRHLGALVADSTKAENAEVEV 286
[Close]
BLAST of mRNA_D-dichotoma_M_contig969.20375.1 vs. uniprot
Match: A0A6H5JZ11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ11_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 7.220e-5
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:  376 FTSAADKVLITAFEHNPLATLVLTGGRRLCALVGNPAKVDTAERQV 513
            F  A D VL+TAF+ NP+A LVL  GR LCALV + +K D  ++ V
Sbjct:    6 FAVAGDSVLVTAFDENPIAPLVLGNGRTLCALVADMSKKDDVDKAV 51
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig969.20375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LCY2_9PHAE2.600e-6771.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKD6_ECTSI4.250e-3644.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZ11_9PHAE7.220e-552.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig969contigD-dichotoma_M_contig969:83147..84129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size515
Cds size513
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig969.20375.1prot_D-dichotoma_M_contig969.20375.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig969 83147..84129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931231.6545851-CDS-D-dichotoma_M_contig969:83146..832851622931231.6545851-CDS-D-dichotoma_M_contig969:83146..83285Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig969 83147..83285 -
1690799677.6039324-CDS-D-dichotoma_M_contig969:83146..832851690799677.6039324-CDS-D-dichotoma_M_contig969:83146..83285Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig969 83147..83285 -
1622931231.6772017-CDS-D-dichotoma_M_contig969:83467..837561622931231.6772017-CDS-D-dichotoma_M_contig969:83467..83756Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig969 83468..83756 -
1690799677.6152308-CDS-D-dichotoma_M_contig969:83467..837561690799677.6152308-CDS-D-dichotoma_M_contig969:83467..83756Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig969 83468..83756 -
1622931231.6967728-CDS-D-dichotoma_M_contig969:84044..841291622931231.6967728-CDS-D-dichotoma_M_contig969:84044..84129Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig969 84045..84129 -
1690799677.6269734-CDS-D-dichotoma_M_contig969:84044..841291690799677.6269734-CDS-D-dichotoma_M_contig969:84044..84129Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig969 84045..84129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig969.20375.1

>prot_D-dichotoma_M_contig969.20375.1 ID=prot_D-dichotoma_M_contig969.20375.1|Name=mRNA_D-dichotoma_M_contig969.20375.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=171bp
EIAGTLHDRGSLVIAMESTVSFNIKHIKDVLGEVNLFLEEFPITSVYLSK
LAGRTATDRKLHYTRQSSSVLVAHKSSEFTCHAPGPQFDPPRTTQLEAVG
MVVSPKHPPPATFLAPAMADHLLSRFTSAADKVLITAFEHNPLATLVLTG
GRRLCALVGNPAKVDTAERQV
back to top

mRNA from alignment at D-dichotoma_M_contig969:83147..84129-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig969.20375.1 ID=mRNA_D-dichotoma_M_contig969.20375.1|Name=mRNA_D-dichotoma_M_contig969.20375.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=983bp|location=Sequence derived from alignment at D-dichotoma_M_contig969:83147..84129- (Dictyota dichotoma ODC1387m male)
GAGATTGCCGGAACCCTCCATGACCGCGGCTCCCTGGTAATCGCGATGGA
ATCGACGGTGTCGTTCAACATCAAACACATCAAAGGTAAGGGCGGAGGGA
GGGATTGATGAAGCAACTGGAATGTCTACAAGCTATTTTTCTTCACGAAC
ACATCCAAACACAGGCGTCTGGCAGTATTGGTGATGAAGACTAGCTGACG
CCCCTTCCTTCACTATATGTTCGAGATAATCCATAGCTTAGCAGCTGGAC
TGATGATGCGTACCTGTCCGAGCAGTCTTGACTTGGACACTGATCGCGAG
TAATGAATGAATGCAACAAGGCATATAGCTGATTCCTCCCGGGCGCCATG
GGTGGATATGCTTGACCATGCAGATGTTTTGGGTGAGGTGAACCTTTTTC
TCGAGGAGTTTCCCATCACGTCCGTGTACCTCTCCAAGCTCGCCGGGCGT
ACTGCGACCGACCGCAAGCTTCACTACACCAGGCAGTCGTCGTCTGTTCT
TGTGGCGCACAAGTCGAGCGAGTTCACCTGTCACGCACCAGGCCCTCAGT
TCGACCCCCCACGGACAACACAACTGGAAGCGGTCGGGATGGTTGTTTCG
CCGAAGCATCCTCCTCCTGCAACGTTTCTTGCACCTGCCATGGCGGACCA
CTTGTTGAGCAGGTGTGCGGGGGGGGTGAAAATGTTGTTGGTTGTAACAC
GGTTGTTCGGAAGTAGTATCTCTTTCTCCTACTGGCAGGTTCCCCATTGT
CTTTTGTGCAGCGCTACAACTATTTTATTGAGTCGCCATGTTAATCTTTC
GCTCCCCTGGTCGCTGCTTTCGTCTCTCTTTTTTGTGTCTTGAGGTTCAC
GTCGGCGGCCGACAAGGTGCTCATTACTGCTTTCGAGCATAATCCCCTTG
CGACCCTCGTGCTGACAGGCGGGCGCCGTCTTTGCGCTCTGGTCGGAAAC
CCCGCCAAGGTGGACACGGCGGAGAGGCAGGTA
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig969:83147..84129-

>mRNA_D-dichotoma_M_contig969.20375.1 ID=mRNA_D-dichotoma_M_contig969.20375.1|Name=mRNA_D-dichotoma_M_contig969.20375.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1026bp|location=Sequence derived from alignment at D-dichotoma_M_contig969:83147..84129- (Dictyota dichotoma ODC1387m male)
GAGATTGCCGGAACCCTCCATGACCGCGGCTCCCTGGTAATCGCGATGGA
ATCGACGGTGTCGTTCAACATCAAACACATCAAAGGAGATTGCCGGAACC
CTCCATGACCGCGGCTCCCTGGTAATCGCGATGGAATCGACGGTGTCGTT
CAACATCAAACACATCAAAGATGTTTTGGGTGAGGTGAACCTTTTTCTCG
AGGAGTTTCCCATCACGTCCGTGTACCTCTCCAAGCTCGCCGGGCGTACT
GCGACCGACCGCAAGCTTCACTACACCAGGCAGTCGTCGTCTGTTCTTGT
GGCGCACAAGTCGAGCGAGTTCACCTGTCACGCACCAGGCCCTCAGTTCG
ACCCCCCACGGACAACACAACTGGAAGCGGTCGGGATGGTTGTTTCGCCG
AAGCATCCTCCTCCTGCAACGTTTCTTGCACCTGCCATGGCGGACCACTT
GTTGAGCAGATGTTTTGGGTGAGGTGAACCTTTTTCTCGAGGAGTTTCCC
ATCACGTCCGTGTACCTCTCCAAGCTCGCCGGGCGTACTGCGACCGACCG
CAAGCTTCACTACACCAGGCAGTCGTCGTCTGTTCTTGTGGCGCACAAGT
CGAGCGAGTTCACCTGTCACGCACCAGGCCCTCAGTTCGACCCCCCACGG
ACAACACAACTGGAAGCGGTCGGGATGGTTGTTTCGCCGAAGCATCCTCC
TCCTGCAACGTTTCTTGCACCTGCCATGGCGGACCACTTGTTGAGCAGGT
TCACGTCGGCGGCCGACAAGGTGCTCATTACTGCTTTCGAGCATAATCCC
CTTGCGACCCTCGTGCTGACAGGCGGGCGCCGTCTTTGCGCTCTGGTCGG
AAACCCCGCCAAGGTGGACACGGCGGAGAGGCAGGTAGTTCACGTCGGCG
GCCGACAAGGTGCTCATTACTGCTTTCGAGCATAATCCCCTTGCGACCCT
CGTGCTGACAGGCGGGCGCCGTCTTTGCGCTCTGGTCGGAAACCCCGCCA
AGGTGGACACGGCGGAGAGGCAGGTA
back to top