mRNA_D-dichotoma_M_contig961.20330.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig961.20330.1
Unique NamemRNA_D-dichotoma_M_contig961.20330.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig961.20330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig961contigD-dichotoma_M_contig961:84034..84601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size568
Cds size390
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931222.0046654-UTR-D-dichotoma_M_contig961:84033..842111622931222.0046654-UTR-D-dichotoma_M_contig961:84033..84211Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig961 84034..84211 +
1690799672.623643-UTR-D-dichotoma_M_contig961:84033..842111690799672.623643-UTR-D-dichotoma_M_contig961:84033..84211Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig961 84034..84211 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931222.0240662-CDS-D-dichotoma_M_contig961:84211..846011622931222.0240662-CDS-D-dichotoma_M_contig961:84211..84601Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig961 84212..84601 +
1690799672.6346679-CDS-D-dichotoma_M_contig961:84211..846011690799672.6346679-CDS-D-dichotoma_M_contig961:84211..84601Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig961 84212..84601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig961.20330.1prot_D-dichotoma_M_contig961.20330.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig961 84212..84601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig961.20330.1

>prot_D-dichotoma_M_contig961.20330.1 ID=prot_D-dichotoma_M_contig961.20330.1|Name=mRNA_D-dichotoma_M_contig961.20330.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=130bp
MSYHIMSDRVTSYHYTFPCHFIPIMPSHVPFYYLYVIPCHIMAWCNLALP
WACWLAWLPGCLPTCHHHFSRGNGSLLTCQGRPTLTLDRSIDPIEPPHRS
KSDGTLNYTTWHADVLVACHGKLGAAQPQT
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mRNA from alignment at D-dichotoma_M_contig961:84034..84601+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig961.20330.1 ID=mRNA_D-dichotoma_M_contig961.20330.1|Name=mRNA_D-dichotoma_M_contig961.20330.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=568bp|location=Sequence derived from alignment at D-dichotoma_M_contig961:84034..84601+ (Dictyota dichotoma ODC1387m male)
CCTCTGCGGACCTTCAACCTCCGGGAGTGGCACGACTCTTTTCAGCATCA
TTCTCAGGTCCTCTACTCCTCTGCTACTGCGGACCGGCGATTATCATTCA
CCCGCTTCCATGAGTTCATGATCTTCTGGAGTCAGGTCTTCTGGAGTCCC
AGTGTCATTCGTCTCGCCATCTCATGTCATGTCATACCACATCATGTCGG
ATCGTGTCACCTCATATCATTATACATTCCCATGTCATTTCATACCCATC
ATGCCATCTCATGTCCCATTCTATTATCTCTATGTCATACCATGTCATAT
CATGGCATGGTGTAATCTTGCTTTGCCCTGGGCCTGTTGGCTTGCCTGGC
TGCCTGGCTGTCTCCCCACTTGTCATCATCACTTCTCTCGTGGAAATGGC
AGCCTCCTCACTTGTCAAGGGAGACCGACCCTAACCCTTGATCGATCCAT
CGATCCGATCGAGCCTCCTCACCGTTCGAAAAGCGACGGAACGCTAAATT
ACACTACTTGGCATGCTGATGTGCTGGTGGCGTGTCATGGTAAGTTAGGG
GCAGCCCAGCCACAGACA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig961:84034..84601+

>mRNA_D-dichotoma_M_contig961.20330.1 ID=mRNA_D-dichotoma_M_contig961.20330.1|Name=mRNA_D-dichotoma_M_contig961.20330.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=780bp|location=Sequence derived from alignment at D-dichotoma_M_contig961:84034..84601+ (Dictyota dichotoma ODC1387m male)
ATGTCATACCACATCATGTCGGATCGTGTCACCTCATATCATTATACATT
CCCATGTCATTTCATACCCATCATGCCATCTCATGTCCCATTCTATTATC
TCTATGTCATACCATGTCATATCATGGCATGGTGTAATCTTGCTTTGCCC
TGGGCCTGTTGGCTTGCCTGGCTGCCTGGCTGTCTCCCCACTTGTCATCA
TCACTTCTCTCGTGGAAATGGCAGCCTCCTCACTTGTCAAGGGAGACCGA
CCCTAACCCTTGATCGATCCATCGATCCGATCGAGCCTCCTCACCGTTCG
AAAAGCGACGGAACGCTAAATTACACTACTTGGCATGCTGATGTGCTGGT
GGCGTGTCATGGTAAGTTAGGGGCAGCCCAGCCACAGACAATGTCATACC
ACATCATGTCGGATCGTGTCACCTCATATCATTATACATTCCCATGTCAT
TTCATACCCATCATGCCATCTCATGTCCCATTCTATTATCTCTATGTCAT
ACCATGTCATATCATGGCATGGTGTAATCTTGCTTTGCCCTGGGCCTGTT
GGCTTGCCTGGCTGCCTGGCTGTCTCCCCACTTGTCATCATCACTTCTCT
CGTGGAAATGGCAGCCTCCTCACTTGTCAAGGGAGACCGACCCTAACCCT
TGATCGATCCATCGATCCGATCGAGCCTCCTCACCGTTCGAAAAGCGACG
GAACGCTAAATTACACTACTTGGCATGCTGATGTGCTGGTGGCGTGTCAT
GGTAAGTTAGGGGCAGCCCAGCCACAGACA
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