mRNA_D-dichotoma_M_contig960.20327.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig960.20327.1
Unique NamemRNA_D-dichotoma_M_contig960.20327.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig960.20327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig960contigD-dichotoma_M_contig960:235073..235471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size400
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931220.4908652-CDS-D-dichotoma_M_contig960:235072..2353781622931220.4908652-CDS-D-dichotoma_M_contig960:235072..235378Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig960 235073..235378 +
1690799671.772315-CDS-D-dichotoma_M_contig960:235072..2353781690799671.772315-CDS-D-dichotoma_M_contig960:235072..235378Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig960 235073..235378 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931220.5104282-UTR-D-dichotoma_M_contig960:235378..2354711622931220.5104282-UTR-D-dichotoma_M_contig960:235378..235471Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig960 235379..235471 +
1690799671.783986-UTR-D-dichotoma_M_contig960:235378..2354711690799671.783986-UTR-D-dichotoma_M_contig960:235378..235471Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig960 235379..235471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig960.20327.1prot_D-dichotoma_M_contig960.20327.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig960 235073..235378 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig960.20327.1

>prot_D-dichotoma_M_contig960.20327.1 ID=prot_D-dichotoma_M_contig960.20327.1|Name=mRNA_D-dichotoma_M_contig960.20327.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=102bp
HDEEERETVKNGRVRNVTRAFSLKARVTSNIFLRRAIEKLEKPRTNAACF
LSRGVFITTGNKERTSPPTGFASKGDDSFCSRHYPPLNVFYSSSMLQTLS
Y*
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mRNA from alignment at D-dichotoma_M_contig960:235073..235471+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig960.20327.1 ID=mRNA_D-dichotoma_M_contig960.20327.1|Name=mRNA_D-dichotoma_M_contig960.20327.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=399bp|location=Sequence derived from alignment at D-dichotoma_M_contig960:235073..235471+ (Dictyota dichotoma ODC1387m male)
CACGATGAGGAGGAACGGGAAACAGTGAAAAATGGACGAGTCCGAAACGT
TACAAGAGCCTTTAGCTTGAAGGCAAGGGTAACGTCAAATATATTCCTAC
GTCGCGCGATCGAAAAACTCGAAAAACCCCGAACGAACGCCGCTTGTTTC
CTCTCCCGCGGCGTTTTCATCACGACCGGGAACAAGGAGCGCACATCACC
GCCCACAGGATTCGCATCAAAAGGTGATGATTCGTTCTGTTCTCGGCATT
ATCCGCCTTTGAACGTCTTCTATTCCTCCTCCATGTTGCAAACATTAAGC
TATTGATCTCGACACGCAGCGGGAGTGTCTCGGCTACATAGAGAAGACTC
GCATGGGAGCGCAGGATGCATTCGTTATCCCGAAAGCTCTGTGACCGCG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig960:235073..235471+

>mRNA_D-dichotoma_M_contig960.20327.1 ID=mRNA_D-dichotoma_M_contig960.20327.1|Name=mRNA_D-dichotoma_M_contig960.20327.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=612bp|location=Sequence derived from alignment at D-dichotoma_M_contig960:235073..235471+ (Dictyota dichotoma ODC1387m male)
CACGATGAGGAGGAACGGGAAACAGTGAAAAATGGACGAGTCCGAAACGT
TACAAGAGCCTTTAGCTTGAAGGCAAGGGTAACGTCAAATATATTCCTAC
GTCGCGCGATCGAAAAACTCGAAAAACCCCGAACGAACGCCGCTTGTTTC
CTCTCCCGCGGCGTTTTCATCACGACCGGGAACAAGGAGCGCACATCACC
GCCCACAGGATTCGCATCAAAAGGTGATGATTCGTTCTGTTCTCGGCATT
ATCCGCCTTTGAACGTCTTCTATTCCTCCTCCATGTTGCAAACATTAAGC
TATTGACACGATGAGGAGGAACGGGAAACAGTGAAAAATGGACGAGTCCG
AAACGTTACAAGAGCCTTTAGCTTGAAGGCAAGGGTAACGTCAAATATAT
TCCTACGTCGCGCGATCGAAAAACTCGAAAAACCCCGAACGAACGCCGCT
TGTTTCCTCTCCCGCGGCGTTTTCATCACGACCGGGAACAAGGAGCGCAC
ATCACCGCCCACAGGATTCGCATCAAAAGGTGATGATTCGTTCTGTTCTC
GGCATTATCCGCCTTTGAACGTCTTCTATTCCTCCTCCATGTTGCAAACA
TTAAGCTATTGA
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