mRNA_D-dichotoma_M_contig958.20287.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig958.20287.1
Unique NamemRNA_D-dichotoma_M_contig958.20287.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig958.20287.1 vs. uniprot
Match: A0A7S1FYW6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FYW6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.440e-7
Identity = 35/95 (36.84%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:  754 LGFHRAEGKRGYTVTEERKARILEFLIDFTEAYELDRDETSSCKIVYMDESYLHINHKSKFSWFTVDGDHRSSNSNGDGQRIIIVHAINADGPVI 1038
            L + RA  K    ++ ER   I  +L  F+EA + ++     C  VYMDESY+H  H + + ++  +   RS  S   G+R+IIVHAI  DGP++
Sbjct:    6 LSYKRARLK-ARILSNERIKYICSYLCHFSEALDFEKKGGRIC--VYMDESYIHTTHSTSYGYYFKE--QRSGQSASKGRRLIIVHAICKDGPLV 95
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig958.20287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1FYW6_9STRA1.440e-736.84Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig958contigD-dichotoma_M_contig958:158816..161295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1397
Cds size1005
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig958.20287.1prot_D-dichotoma_M_contig958.20287.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig958 160291..161295 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931212.6219778-UTR-D-dichotoma_M_contig958:158815..1590041622931212.6219778-UTR-D-dichotoma_M_contig958:158815..159004Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig958 158816..159004 +
1690799667.8694901-UTR-D-dichotoma_M_contig958:158815..1590041690799667.8694901-UTR-D-dichotoma_M_contig958:158815..159004Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig958 158816..159004 +
1622931212.6399028-UTR-D-dichotoma_M_contig958:159468..1596601622931212.6399028-UTR-D-dichotoma_M_contig958:159468..159660Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig958 159469..159660 +
1690799667.879789-UTR-D-dichotoma_M_contig958:159468..1596601690799667.879789-UTR-D-dichotoma_M_contig958:159468..159660Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig958 159469..159660 +
1622931212.6577017-UTR-D-dichotoma_M_contig958:160281..1602901622931212.6577017-UTR-D-dichotoma_M_contig958:160281..160290Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig958 160282..160290 +
1690799667.8903468-UTR-D-dichotoma_M_contig958:160281..1602901690799667.8903468-UTR-D-dichotoma_M_contig958:160281..160290Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig958 160282..160290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931212.6766424-CDS-D-dichotoma_M_contig958:160290..1612951622931212.6766424-CDS-D-dichotoma_M_contig958:160290..161295Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig958 160291..161295 +
1690799667.901089-CDS-D-dichotoma_M_contig958:160290..1612951690799667.901089-CDS-D-dichotoma_M_contig958:160290..161295Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig958 160291..161295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig958.20287.1

>prot_D-dichotoma_M_contig958.20287.1 ID=prot_D-dichotoma_M_contig958.20287.1|Name=mRNA_D-dichotoma_M_contig958.20287.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=335bp
MLLLYFHLALKIGKKEREAVQFVHQALGISKPIITEARDQFIAYHSIRTR
DGSQRGGRNGPLAPPGTTRHLREKVEQNNNEGRRVTATELWKWLGSDPSD
DEEGRTPVKVSHKTVCNWLPPLGFHRAEGKRGYTVTEERKARILEFLIDF
TEAYELDRDETSSCKIVYMDESYLHINHKSKFSWFTVDGDHRSSNSNGDG
QRIIIVHAINADGPVIANGWREGGTRQGFPKAEGWFVSEVGKRGKARREG
SGSERGRGGKSRGRQGEGNVQSGDESGFVLGTLGDGSNEQPSHADGTGAS
VEGVGPSRVVISDEQTAEMLFPAGEKNSQDYHKNL
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mRNA from alignment at D-dichotoma_M_contig958:158816..161295+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig958.20287.1 ID=mRNA_D-dichotoma_M_contig958.20287.1|Name=mRNA_D-dichotoma_M_contig958.20287.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2480bp|location=Sequence derived from alignment at D-dichotoma_M_contig958:158816..161295+ (Dictyota dichotoma ODC1387m male)
GTACTTCACCTTGCTGGAAACTCGCAAGTTCGAAAACAACCATCAGTTCA
GGGTGGTCAAGGCTGTTGTGGCAACCTTTACTTGAGCGGCTGGCGTGCTT
CTCGTCCGAGAGGAGGCTGGCGCCAAATTCGTTGGGAAGGCACCACCCTC
CATCTCATCGTTCCTTCCGGCAGAGGGCTCCGGTTTCAAGTGAGTTTGTC
TGTAAGAATCTGTCTTTGGTATGCACTGTACCGCACCCCTTGTTGTTGTG
GCGATAAACTCTGTATTCGAGGAATGCCCAAGGCGTGAAGTCTACGTTAG
AGACGACGAGACAGTTGTTTGGACTCTGAACGTGTAGACTTCGCGCATTA
AAGGACCGCGTCGTTGGTCGACCACGTATGTTGATCGGTTAGAGACAAAC
ATGAGTGTCATGGAAAATTGTCCCCACACGGCGAGACTACAGTAATACAT
GGTGCAGGTTGTACAGTAACGTGATACAGTATCGTAACTCGGAAGAACAT
GGTAGGGCTGGTGTGCTTGTCGGCCCTCAGGCTGCATGATATAACTGTAA
GAGCATATGCCGTCACCTCTTTCACTGGAGGGTAAAAACGTACTGTACCG
TACTTACTCTGTGTTTCTCCTTCGATGCACAATATCTCATCATGCCTCAA
AAGAGCAAGCAAACTCTGCGCTACGAGAAAGCTGGCCAAAGGCTCATCGA
GTACAACGAGGAGCAGAAGCGTCTACGCAAGATATTATAATCAAGAATCA
AGAGGCAGGAACAACGGAAAGCACGCCGTAGGATTGCGCATTACCTGAAG
AAGGAACTCAAGCGACGGCAAGGAGCTATCTTGTCCGAACGAGAGGTACA
GTAAGACGTGCGATAGAGAAGGGTGCTTCGCTGGTCAATCCGCGATTTGT
ATCGAAGTAATCCGATGAACTTGTCGTCATGCTTCTCGTTGAGTACAACA
CCTTTCGCAGCAAGATCTGGGTTTTTCAATTTGTGGGCTTCAGAACATGA
GTCGCAGAGAGTAACCCTTTGCGTAGGCAATGCGAAACCAACGATGCTGA
CTTCTTAACCGGCGGTTGGATACAGTAGAACTCTTTTATCACGAGCGAGG
TTGCACAATTCGGGCGAGATCAGAAGGGTATATACATCATAATTGTAATG
TGGTCTCAACAGGGATGTCGCTGGATTCCTGCGACCAAAGGCTTTCATGG
GCACTTGTACAGTATGTGCTATCTTTAGCGGTGGAAAAGATCTGGTTCAG
CAGGTGCAGCCTTCCTTGTGAATGATCTAAATCACGTGTTACGAAATCAC
CATTCGTTGCTGTATCAAGATCACAAGCACTGTACCCACTACACGTACAC
GGTGCCTGAAAGAAAATAGTGTACATGTTGTAGCCTACTACAGTACCAGA
ATGTCATTAATTCCTCACAATATCTGTAACTAATTTGTGTTCCCTGCCCA
CCACGAATTCCCGCAGATTATACTGATGCTGCTCCTCTACTTCCATCTCG
CCTTGAAGATAGGGAAGAAGGAACGCGAAGCTGTACAGTTTGTGCATCAG
GCCCTCGGAATCAGTAAGCCAATCATCACGGAAGCTAGGGACCAGTTCAT
AGCGTATCACTCTATACGCACGAGGGATGGTTCCCAACGTGGAGGCAGGA
ATGGACCCCTGGCCCCGCCAGGCACCACCCGTCATCTGAGGGAAAAAGTG
GAGCAAAATAACAACGAGGGGCGCCGGGTGACGGCGACTGAGCTTTGGAA
GTGGCTTGGTAGTGATCCATCTGACGATGAAGAGGGTAGGACACCAGTCA
AGGTCAGCCACAAGACCGTGTGCAACTGGCTTCCTCCTCTTGGCTTTCAT
AGAGCAGAAGGAAAGCGTGGTTACACTGTAACTGAGGAAAGAAAGGCCCG
TATTCTGGAATTTCTTATTGACTTTACTGAGGCGTACGAACTCGATCGCG
ATGAGACGTCGTCGTGCAAGATCGTTTACATGGATGAGTCGTATCTCCAT
ATAAACCACAAGAGTAAGTTCTCTTGGTTCACCGTCGACGGAGATCATCG
CTCTTCCAATTCAAATGGGGATGGTCAAAGGATCATCATCGTCCATGCCA
TCAACGCTGATGGTCCAGTGATTGCCAACGGGTGGCGCGAGGGTGGGACG
AGGCAAGGGTTTCCCAAGGCTGAAGGGTGGTTCGTATCAGAGGTTGGAAA
GCGTGGAAAGGCTCGCCGTGAGGGTTCAGGAAGTGAACGGGGACGGGGCG
GAAAAAGTCGCGGGAGGCAGGGGGAAGGGAACGTACAGAGCGGAGATGAG
AGCGGATTTGTACTGGGAACCCTGGGTGACGGGAGTAACGAGCAACCAAG
TCATGCAGACGGTACCGGCGCATCAGTTGAAGGTGTGGGGCCTTCACGTG
TCGTGATTTCTGATGAGCAGACGGCAGAGATGCTGTTTCCTGCGGGGGAA
AAGAACTCGCAAGATTACCATAAAAACCTG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig958:158816..161295+

>mRNA_D-dichotoma_M_contig958.20287.1 ID=mRNA_D-dichotoma_M_contig958.20287.1|Name=mRNA_D-dichotoma_M_contig958.20287.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=2010bp|location=Sequence derived from alignment at D-dichotoma_M_contig958:158816..161295+ (Dictyota dichotoma ODC1387m male)
ATGCTGCTCCTCTACTTCCATCTCGCCTTGAAGATAGGGAAGAAGGAACG
CGAAGCTGTACAGTTTGTGCATCAGGCCCTCGGAATCAGTAAGCCAATCA
TCACGGAAGCTAGGGACCAGTTCATAGCGTATCACTCTATACGCACGAGG
GATGGTTCCCAACGTGGAGGCAGGAATGGACCCCTGGCCCCGCCAGGCAC
CACCCGTCATCTGAGGGAAAAAGTGGAGCAAAATAACAACGAGGGGCGCC
GGGTGACGGCGACTGAGCTTTGGAAGTGGCTTGGTAGTGATCCATCTGAC
GATGAAGAGGGTAGGACACCAGTCAAGGTCAGCCACAAGACCGTGTGCAA
CTGGCTTCCTCCTCTTGGCTTTCATAGAGCAGAAGGAAAGCGTGGTTACA
CTGTAACTGAGGAAAGAAAGGCCCGTATTCTGGAATTTCTTATTGACTTT
ACTGAGGCGTACGAACTCGATCGCGATGAGACGTCGTCGTGCAAGATCGT
TTACATGGATGAGTCGTATCTCCATATAAACCACAAGAGTAAGTTCTCTT
GGTTCACCGTCGACGGAGATCATCGCTCTTCCAATTCAAATGGGGATGGT
CAAAGGATCATCATCGTCCATGCCATCAACGCTGATGGTCCAGTGATTGC
CAACGGGTGGCGCGAGGGTGGGACGAGGCAAGGGTTTCCCAAGGCTGAAG
GGTGGTTCGTATCAGAGGTTGGAAAGCGTGGAAAGGCTCGCCGTGAGGGT
TCAGGAAGTGAACGGGGACGGGGCGGAAAAAGTCGCGGGAGGCAGGGGGA
AGGGAACGTACAGAGCGGAGATGAGAGCGGATTTGTACTGGGAACCCTGG
GTGACGGGAGTAACGAGCAACCAAGTCATGCAGACGGTACCGGCGCATCA
GTTGAAGGTGTGGGGCCTTCACGTGTCGTGATTTCTGATGAGCAGACGGC
AGAGATGCTGTTTCCTGCGGGGGAAAAGAACTCGCAAGATTACCATAAAA
ACCTGATGCTGCTCCTCTACTTCCATCTCGCCTTGAAGATAGGGAAGAAG
GAACGCGAAGCTGTACAGTTTGTGCATCAGGCCCTCGGAATCAGTAAGCC
AATCATCACGGAAGCTAGGGACCAGTTCATAGCGTATCACTCTATACGCA
CGAGGGATGGTTCCCAACGTGGAGGCAGGAATGGACCCCTGGCCCCGCCA
GGCACCACCCGTCATCTGAGGGAAAAAGTGGAGCAAAATAACAACGAGGG
GCGCCGGGTGACGGCGACTGAGCTTTGGAAGTGGCTTGGTAGTGATCCAT
CTGACGATGAAGAGGGTAGGACACCAGTCAAGGTCAGCCACAAGACCGTG
TGCAACTGGCTTCCTCCTCTTGGCTTTCATAGAGCAGAAGGAAAGCGTGG
TTACACTGTAACTGAGGAAAGAAAGGCCCGTATTCTGGAATTTCTTATTG
ACTTTACTGAGGCGTACGAACTCGATCGCGATGAGACGTCGTCGTGCAAG
ATCGTTTACATGGATGAGTCGTATCTCCATATAAACCACAAGAGTAAGTT
CTCTTGGTTCACCGTCGACGGAGATCATCGCTCTTCCAATTCAAATGGGG
ATGGTCAAAGGATCATCATCGTCCATGCCATCAACGCTGATGGTCCAGTG
ATTGCCAACGGGTGGCGCGAGGGTGGGACGAGGCAAGGGTTTCCCAAGGC
TGAAGGGTGGTTCGTATCAGAGGTTGGAAAGCGTGGAAAGGCTCGCCGTG
AGGGTTCAGGAAGTGAACGGGGACGGGGCGGAAAAAGTCGCGGGAGGCAG
GGGGAAGGGAACGTACAGAGCGGAGATGAGAGCGGATTTGTACTGGGAAC
CCTGGGTGACGGGAGTAACGAGCAACCAAGTCATGCAGACGGTACCGGCG
CATCAGTTGAAGGTGTGGGGCCTTCACGTGTCGTGATTTCTGATGAGCAG
ACGGCAGAGATGCTGTTTCCTGCGGGGGAAAAGAACTCGCAAGATTACCA
TAAAAACCTG
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