mRNA_D-dichotoma_M_contig957.20282.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig957.20282.1
Unique NamemRNA_D-dichotoma_M_contig957.20282.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig957.20282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig957contigD-dichotoma_M_contig957:184917..185481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size565
Cds size429
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931211.0821378-CDS-D-dichotoma_M_contig957:184916..1853451622931211.0821378-CDS-D-dichotoma_M_contig957:184916..185345Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig957 184917..185345 +
1690799667.0312688-CDS-D-dichotoma_M_contig957:184916..1853451690799667.0312688-CDS-D-dichotoma_M_contig957:184916..185345Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig957 184917..185345 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931211.0993361-UTR-D-dichotoma_M_contig957:185345..1854811622931211.0993361-UTR-D-dichotoma_M_contig957:185345..185481Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig957 185346..185481 +
1690799667.0412376-UTR-D-dichotoma_M_contig957:185345..1854811690799667.0412376-UTR-D-dichotoma_M_contig957:185345..185481Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig957 185346..185481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig957.20282.1prot_D-dichotoma_M_contig957.20282.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig957 184917..185345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig957.20282.1

>prot_D-dichotoma_M_contig957.20282.1 ID=prot_D-dichotoma_M_contig957.20282.1|Name=mRNA_D-dichotoma_M_contig957.20282.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=143bp
MGWVTRWSGYGKGPNHVPPTPGDPTLPHRVVTPTGLADGASKTFIALRKQ
SPRIVFVDHRLTRLGSGKNIWNVSPKNHVQAPGTKDSLLAVVGSTKNQIR
ALNCAKTRVDGDHTTIPVHRDLYRRNLSSTNKNNGGRGGVQP*
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mRNA from alignment at D-dichotoma_M_contig957:184917..185481+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig957.20282.1 ID=mRNA_D-dichotoma_M_contig957.20282.1|Name=mRNA_D-dichotoma_M_contig957.20282.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=565bp|location=Sequence derived from alignment at D-dichotoma_M_contig957:184917..185481+ (Dictyota dichotoma ODC1387m male)
ATGGGATGGGTGACGAGATGGTCCGGGTACGGCAAGGGCCCCAACCATGT
ACCACCAACCCCTGGGGATCCGACTCTTCCTCACCGAGTGGTTACACCGA
CTGGACTAGCTGATGGGGCATCGAAAACATTTATCGCACTCAGGAAGCAG
TCACCACGAATTGTATTTGTAGACCATCGCTTGACGAGGTTAGGGTCAGG
AAAGAACATCTGGAACGTGTCGCCAAAGAACCATGTACAAGCACCGGGCA
CCAAGGACAGTCTGCTGGCAGTTGTGGGGTCTACAAAGAACCAAATACGC
GCACTAAACTGCGCGAAAACAAGGGTCGATGGTGATCACACCACGATTCC
GGTCCATCGTGATTTGTATCGCCGTAACTTATCATCAACCAATAAAAACA
ACGGCGGAAGAGGTGGGGTACAACCATGAGCTACTTGAAGCGATAAACGA
TCATGACCCTCACGAATGATGTCATGGTCAATGATCGCCGTCATCAGCAC
CAGCAGGAGTAGGAAGATAGCCAGGCAGCAGGACTCCAACGACTGCTTCG
ATCGCCATATCATGA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig957:184917..185481+

>mRNA_D-dichotoma_M_contig957.20282.1 ID=mRNA_D-dichotoma_M_contig957.20282.1|Name=mRNA_D-dichotoma_M_contig957.20282.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=858bp|location=Sequence derived from alignment at D-dichotoma_M_contig957:184917..185481+ (Dictyota dichotoma ODC1387m male)
ATGGGATGGGTGACGAGATGGTCCGGGTACGGCAAGGGCCCCAACCATGT
ACCACCAACCCCTGGGGATCCGACTCTTCCTCACCGAGTGGTTACACCGA
CTGGACTAGCTGATGGGGCATCGAAAACATTTATCGCACTCAGGAAGCAG
TCACCACGAATTGTATTTGTAGACCATCGCTTGACGAGGTTAGGGTCAGG
AAAGAACATCTGGAACGTGTCGCCAAAGAACCATGTACAAGCACCGGGCA
CCAAGGACAGTCTGCTGGCAGTTGTGGGGTCTACAAAGAACCAAATACGC
GCACTAAACTGCGCGAAAACAAGGGTCGATGGTGATCACACCACGATTCC
GGTCCATCGTGATTTGTATCGCCGTAACTTATCATCAACCAATAAAAACA
ACGGCGGAAGAGGTGGGGTACAACCATGAATGGGATGGGTGACGAGATGG
TCCGGGTACGGCAAGGGCCCCAACCATGTACCACCAACCCCTGGGGATCC
GACTCTTCCTCACCGAGTGGTTACACCGACTGGACTAGCTGATGGGGCAT
CGAAAACATTTATCGCACTCAGGAAGCAGTCACCACGAATTGTATTTGTA
GACCATCGCTTGACGAGGTTAGGGTCAGGAAAGAACATCTGGAACGTGTC
GCCAAAGAACCATGTACAAGCACCGGGCACCAAGGACAGTCTGCTGGCAG
TTGTGGGGTCTACAAAGAACCAAATACGCGCACTAAACTGCGCGAAAACA
AGGGTCGATGGTGATCACACCACGATTCCGGTCCATCGTGATTTGTATCG
CCGTAACTTATCATCAACCAATAAAAACAACGGCGGAAGAGGTGGGGTAC
AACCATGA
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