mRNA_D-dichotoma_M_contig957.20281.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig957.20281.1
Unique NamemRNA_D-dichotoma_M_contig957.20281.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig957.20281.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 5.630e-14
Identity = 39/75 (52.00%), Postives = 57/75 (76.00%), Query Frame = 3
Query:   63 FMIRCEALAPYESLWDSCVSRLAHAVIFSSMYLALLLEVNFSGERVASQKVYEALLVGAHVTMVVLAFVEAVVVS 287
            F++  E LAPY S WD+ +SR+ HAV+F SMY+ALLL+V+ S ERV SQ+V+E +LV AH  M+++  +E VV++
Sbjct: 1970 FVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMILVIVIETVVLT 2044          
BLAST of mRNA_D-dichotoma_M_contig957.20281.1 vs. uniprot
Match: A0A6H5KP34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP34_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.890e-13
Identity = 38/76 (50.00%), Postives = 55/76 (72.37%), Query Frame = 3
Query:   60 IFMIRCEALAPYESLWDSCVSRLAHAVIFSSMYLALLLEVNFSGERVASQKVYEALLVGAHVTMVVLAFVEAVVVS 287
            +F +  EAL P    WD+ VSR++HAV+F S+Y+ALLL+V+ S E+ +SQKV+EA+LV AH  MV+   VE +V+ 
Sbjct:   58 VFAVLSEALHPNAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSDEKRSSQKVFEAVLVAAHACMVLAVVVETIVLG 133          
BLAST of mRNA_D-dichotoma_M_contig957.20281.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 4.430e-13
Identity = 40/87 (45.98%), Postives = 63/87 (72.41%), Query Frame = 3
Query:   51 VCSIFMIRCEALAPYESLWDSCVSRLAHAVIFSSMYLALLLEVNFSGERVASQKVYEALLVGAHVTMVVLAFVEAVVVSGN-WLKRR 308
            +  +F +  EALAPY S WD+ + R+ HAV+  SMY+ALLL+V+ S ER +SQ+V+E+LLV AHV MV +  +E ++ + + W+++R
Sbjct:  876 IAVVFAMISEALAPYASRWDTWLCRMGHAVVAVSMYVALLLKVDVSDERASSQRVFESLLVAAHVCMVGVVLLEVIMEAISLWVEKR 962          
BLAST of mRNA_D-dichotoma_M_contig957.20281.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 5.520e-13
Identity = 37/77 (48.05%), Postives = 58/77 (75.32%), Query Frame = 3
Query:   63 FMIRCEALAPYESLWDSCVSRLAHAVIFSSMYLALLLEVNFSGERVASQKVYEALLVGAHVTMVVLAFVEAVVVSGN 293
            F+I  E L+PY S WD  V+R+ H V+F SM++ALLL+V+ + E  +SQKV+E++LV AHV MV++  +EA+V++ +
Sbjct:  601 FVIVSEVLSPYSSKWDRWVNRMGHVVVFVSMFVALLLKVDVADEDASSQKVFESVLVAAHVCMVLVVVIEAIVLTSS 677          
BLAST of mRNA_D-dichotoma_M_contig957.20281.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 6.010e-13
Identity = 37/76 (48.68%), Postives = 56/76 (73.68%), Query Frame = 3
Query:   60 IFMIRCEALAPYESLWDSCVSRLAHAVIFSSMYLALLLEVNFSGERVASQKVYEALLVGAHVTMVVLAFVEAVVVS 287
            +F +  EAL PY   WD+ VSR++HAV+F S+Y+ALLL+V+ S E+ +SQKV+EA+LV AH  M++   VE +++ 
Sbjct:  919 VFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILLG 994          
BLAST of mRNA_D-dichotoma_M_contig957.20281.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 6.580e-13
Identity = 37/76 (48.68%), Postives = 56/76 (73.68%), Query Frame = 3
Query:   60 IFMIRCEALAPYESLWDSCVSRLAHAVIFSSMYLALLLEVNFSGERVASQKVYEALLVGAHVTMVVLAFVEAVVVS 287
            +F +  EAL PY   WD+ VSR++HAV+F S+Y+ALLL+V+ S E+ +SQKV+EA+LV AH  M++   VE +++ 
Sbjct: 2657 VFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILLG 2732          
BLAST of mRNA_D-dichotoma_M_contig957.20281.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.580e-12
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 3
Query:   63 FMIRCEALAPYESLWDSCVSRLAHAVIFSSMYLALLLEVNFSGERVASQKVYEALLVGAHVTMVVLAFVEAVV 281
            F++  EAL PY+S WD  ++R+ H V+FSSM+L LLL+VN S E VASQ+V+E +LV  H  MV+   VE VV
Sbjct: 1526 FVVVSEALNPYKSGWDRWINRMGHVVVFSSMFLGLLLKVNVSDEHVASQRVFEIVLVAVHALMVMAIVVETVV 1598          
BLAST of mRNA_D-dichotoma_M_contig957.20281.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.090e-12
Identity = 45/116 (38.79%), Postives = 67/116 (57.76%), Query Frame = 3
Query:   63 FMIRCEALAPYESLWDSCVSRLAHAVIFSSMYLALLLEVNFSGERVASQKVYEALLVGAHVTMVVLAFVEAVVVSGNWLKRR*IYCHDISHVRTPCCLRSG-GTNSGKFNPFGWEM 407
            F++  E LAP+ S WD+ ++R  H V+F SMY+ALLL+V+ SGER  SQ+VYE +LV AH  M++    E  V++  W  +        +  R     RSG G  S + +PF  ++
Sbjct: 1159 FVMVSEGLAPFASKWDAWLNRTGHTVVFVSMYIALLLKVDVSGERAGSQRVYEIVLVAAHACMILAVMTETFVLT--WSLKVEQRQEPTTRFRHGKLFRSGRGLESAQDDPFSADL 1272          
BLAST of mRNA_D-dichotoma_M_contig957.20281.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.150e-12
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 3
Query:   51 VCSIFMIRCEALAPYESLWDSCVSRLAHAVIFSSMYLALLLEVNFSGERVASQKVYEALLVGAHVTMVVLAFVEAVVVS 287
            V   F++  E LAPY S WD+ ++R+ H V+ +SMYLALLL+V+ S ER +SQ V+EA+LV AHV MVV+   E +V++
Sbjct: 1511 VAFTFVLISEGLAPYASRWDTWINRMGHVVVVASMYLALLLKVDVSKERSSSQGVFEAVLVVAHVVMVVVXVAETLVLA 1589          
BLAST of mRNA_D-dichotoma_M_contig957.20281.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 8.430e-5
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 3
Query:   51 VCSIFMIRCEALAPYESLWDSCVSRLAHAVIFSSMYLALLLEVNFSGERVASQKVYEALLVGAHVTMVVLAFVEAV 278
            + +IFM   + L+P+   +D  + R    +IF SMYLALLL+V+ S E   SQ  +  +L+ AHV MV++  V+AV
Sbjct:  985 LAAIFMAVSDVLSPFADPFDGWLYRTGAWIIFFSMYLALLLKVDASDEDSQSQAAFAKVLIAAHVGMVLVVLVQAV 1060          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig957.20281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G5Y7_ECTSI5.630e-1452.00Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5KP34_9PHAE3.890e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2Z8_ECTSI4.430e-1345.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LH65_ECTSI5.520e-1348.05Polymorphic outer membrane protein G/I family prot... [more]
D7FHH1_ECTSI6.010e-1348.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHG7_ECTSI6.580e-1348.68LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTI5_ECTSI1.580e-1253.42Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7G301_ECTSI2.090e-1238.79Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LSC0_ECTSI2.150e-1250.63Polymorphic Outer membrane protein G/I family n=3 ... [more]
A0A6H5JWI3_9PHAE8.430e-540.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig957contigD-dichotoma_M_contig957:165989..166618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue5.3e-13
Seed eggNOG ortholog2880.D7G5Y7
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size630
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig957.20281.1prot_D-dichotoma_M_contig957.20281.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig957 166054..166299 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931211.4094613-UTR-D-dichotoma_M_contig957:165988..1660531622931211.4094613-UTR-D-dichotoma_M_contig957:165988..166053Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig957 165989..166053 +
1690799667.1944692-UTR-D-dichotoma_M_contig957:165988..1660531690799667.1944692-UTR-D-dichotoma_M_contig957:165988..166053Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig957 165989..166053 +
1622931211.458796-UTR-D-dichotoma_M_contig957:166299..1666181622931211.458796-UTR-D-dichotoma_M_contig957:166299..166618Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig957 166300..166618 +
1690799667.2152007-UTR-D-dichotoma_M_contig957:166299..1666181690799667.2152007-UTR-D-dichotoma_M_contig957:166299..166618Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig957 166300..166618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931211.4360118-CDS-D-dichotoma_M_contig957:166053..1662991622931211.4360118-CDS-D-dichotoma_M_contig957:166053..166299Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig957 166054..166299 +
1690799667.205875-CDS-D-dichotoma_M_contig957:166053..1662991690799667.205875-CDS-D-dichotoma_M_contig957:166053..166299Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig957 166054..166299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig957.20281.1

>prot_D-dichotoma_M_contig957.20281.1 ID=prot_D-dichotoma_M_contig957.20281.1|Name=mRNA_D-dichotoma_M_contig957.20281.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=82bp
MIRCEALAPYESLWDSCVSRLAHAVIFSSMYLALLLEVNFSGERVASQKV
YEALLVGAHVTMVVLAFVEAVVVSGNWLKRR*
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mRNA from alignment at D-dichotoma_M_contig957:165989..166618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig957.20281.1 ID=mRNA_D-dichotoma_M_contig957.20281.1|Name=mRNA_D-dichotoma_M_contig957.20281.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=630bp|location=Sequence derived from alignment at D-dichotoma_M_contig957:165989..166618+ (Dictyota dichotoma ODC1387m male)
GTGGTGTTCATCTACCCGAATACGATAGCCCAGATAGCGATATCTCTCAT GTTTGCAGTATTTTTATGATTCGTTGTGAGGCCTTAGCCCCGTATGAGTC GCTTTGGGATTCATGCGTGAGTCGCTTGGCACATGCGGTTATCTTTTCCA GTATGTACCTGGCCCTCTTACTTGAGGTAAACTTTTCCGGCGAACGTGTG GCAAGCCAGAAGGTGTACGAGGCACTCCTTGTCGGTGCTCACGTGACCAT GGTCGTGCTGGCTTTCGTAGAGGCCGTTGTGGTGTCTGGCAACTGGCTCA AACGGCGATAAATATACTGCCACGATATATCCCATGTGAGGACCCCCTGT TGTTTGCGTAGTGGCGGGACTAACTCAGGGAAATTCAATCCGTTTGGATG GGAAATGAGCGAAAATCATTTTGGTCAGGTTTCGAGGCAGTAGAAGAGTG ATCTAAGTATGAAGGGCCTCAGCCCCGTCATTCACTGTACACTGGATTCT TCTAAAGTCTTCGAGACACCAACGTTTGGTTCTCGGAAAGGCAAAGTGTG TTGGGGTTTGTGTGAGCGCTGCGAGTATCTTGCTTTTTGTACCTGTGTCA AGTAGTATGTGACTTAAAGTCCACCTGTTG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig957:165989..166618+

>mRNA_D-dichotoma_M_contig957.20281.1 ID=mRNA_D-dichotoma_M_contig957.20281.1|Name=mRNA_D-dichotoma_M_contig957.20281.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=492bp|location=Sequence derived from alignment at D-dichotoma_M_contig957:165989..166618+ (Dictyota dichotoma ODC1387m male)
ATGATTCGTTGTGAGGCCTTAGCCCCGTATGAGTCGCTTTGGGATTCATG
CGTGAGTCGCTTGGCACATGCGGTTATCTTTTCCAGTATGTACCTGGCCC
TCTTACTTGAGGTAAACTTTTCCGGCGAACGTGTGGCAAGCCAGAAGGTG
TACGAGGCACTCCTTGTCGGTGCTCACGTGACCATGGTCGTGCTGGCTTT
CGTAGAGGCCGTTGTGGTGTCTGGCAACTGGCTCAAACGGCGATAAATGA
TTCGTTGTGAGGCCTTAGCCCCGTATGAGTCGCTTTGGGATTCATGCGTG
AGTCGCTTGGCACATGCGGTTATCTTTTCCAGTATGTACCTGGCCCTCTT
ACTTGAGGTAAACTTTTCCGGCGAACGTGTGGCAAGCCAGAAGGTGTACG
AGGCACTCCTTGTCGGTGCTCACGTGACCATGGTCGTGCTGGCTTTCGTA
GAGGCCGTTGTGGTGTCTGGCAACTGGCTCAAACGGCGATAA
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