mRNA_D-dichotoma_M_contig957.20280.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig957.20280.1
Unique NamemRNA_D-dichotoma_M_contig957.20280.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig957.20280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig957contigD-dichotoma_M_contig957:133022..133527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size506
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931211.0169184-UTR-D-dichotoma_M_contig957:133021..1331761622931211.0169184-UTR-D-dichotoma_M_contig957:133021..133176Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig957 133022..133176 +
1690799667.0082834-UTR-D-dichotoma_M_contig957:133021..1331761690799667.0082834-UTR-D-dichotoma_M_contig957:133021..133176Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig957 133022..133176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931211.0359106-CDS-D-dichotoma_M_contig957:133176..1335271622931211.0359106-CDS-D-dichotoma_M_contig957:133176..133527Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig957 133177..133527 +
1690799667.0194929-CDS-D-dichotoma_M_contig957:133176..1335271690799667.0194929-CDS-D-dichotoma_M_contig957:133176..133527Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig957 133177..133527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig957.20280.1prot_D-dichotoma_M_contig957.20280.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig957 133177..133527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig957.20280.1

>prot_D-dichotoma_M_contig957.20280.1 ID=prot_D-dichotoma_M_contig957.20280.1|Name=mRNA_D-dichotoma_M_contig957.20280.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=117bp
MANVPDWLPSPPSVKRNPLYETIIRPVLYLASVEQVYHPYFTLSLNVTVS
FNYSMTFRYTSENGHILANINLHVLICYSILYCGHLLRLRNYSPRSSPRD
YQIQDLTGPHKQYIIPD
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mRNA from alignment at D-dichotoma_M_contig957:133022..133527+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig957.20280.1 ID=mRNA_D-dichotoma_M_contig957.20280.1|Name=mRNA_D-dichotoma_M_contig957.20280.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=506bp|location=Sequence derived from alignment at D-dichotoma_M_contig957:133022..133527+ (Dictyota dichotoma ODC1387m male)
TACATAGAGTCCCTCGTAGTACATTGCGCATCGCGCATGGAAAACTGCCC
TATTCCAAATGTTCATCCTGTAACGCCCACGGAAATCCTGCTTCACAGTT
GCCACTGTAACAAACCCATCTTCCTCAACTTGATCTCTCAAAAGCTCGGT
ACATTATGGCAAATGTCCCCGACTGGCTCCCAAGTCCGCCCTCCGTCAAG
CGCAACCCACTCTACGAAACCATTATACGCCCCGTCCTCTATCTGGCCTC
TGTTGAGCAGGTCTACCATCCGTATTTCACACTATCGTTGAACGTTACCG
TTTCCTTCAATTACTCCATGACGTTCAGATATACTTCGGAGAATGGACAC
ATTCTTGCTAATATAAACCTCCATGTGCTGATTTGTTATTCTATCCTCTA
TTGTGGACACCTGCTTCGCTTGCGCAACTACTCTCCACGGTCCAGTCCTC
GTGACTACCAAATTCAGGACCTTACGGGGCCGCACAAGCAATACATAATC
CCCGAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig957:133022..133527+

>mRNA_D-dichotoma_M_contig957.20280.1 ID=mRNA_D-dichotoma_M_contig957.20280.1|Name=mRNA_D-dichotoma_M_contig957.20280.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=702bp|location=Sequence derived from alignment at D-dichotoma_M_contig957:133022..133527+ (Dictyota dichotoma ODC1387m male)
ATGGCAAATGTCCCCGACTGGCTCCCAAGTCCGCCCTCCGTCAAGCGCAA
CCCACTCTACGAAACCATTATACGCCCCGTCCTCTATCTGGCCTCTGTTG
AGCAGGTCTACCATCCGTATTTCACACTATCGTTGAACGTTACCGTTTCC
TTCAATTACTCCATGACGTTCAGATATACTTCGGAGAATGGACACATTCT
TGCTAATATAAACCTCCATGTGCTGATTTGTTATTCTATCCTCTATTGTG
GACACCTGCTTCGCTTGCGCAACTACTCTCCACGGTCCAGTCCTCGTGAC
TACCAAATTCAGGACCTTACGGGGCCGCACAAGCAATACATAATCCCCGA
CATGGCAAATGTCCCCGACTGGCTCCCAAGTCCGCCCTCCGTCAAGCGCA
ACCCACTCTACGAAACCATTATACGCCCCGTCCTCTATCTGGCCTCTGTT
GAGCAGGTCTACCATCCGTATTTCACACTATCGTTGAACGTTACCGTTTC
CTTCAATTACTCCATGACGTTCAGATATACTTCGGAGAATGGACACATTC
TTGCTAATATAAACCTCCATGTGCTGATTTGTTATTCTATCCTCTATTGT
GGACACCTGCTTCGCTTGCGCAACTACTCTCCACGGTCCAGTCCTCGTGA
CTACCAAATTCAGGACCTTACGGGGCCGCACAAGCAATACATAATCCCCG
AC
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