mRNA_D-dichotoma_M_contig957.20278.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig957.20278.1
Unique NamemRNA_D-dichotoma_M_contig957.20278.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig957.20278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig957contigD-dichotoma_M_contig957:99026..101138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size337
Cds size336
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig957.20278.1prot_D-dichotoma_M_contig957.20278.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig957 99026..101138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931210.8742182-CDS-D-dichotoma_M_contig957:99025..991141622931210.8742182-CDS-D-dichotoma_M_contig957:99025..99114Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig957 99026..99114 +
1690799666.953974-CDS-D-dichotoma_M_contig957:99025..991141690799666.953974-CDS-D-dichotoma_M_contig957:99025..99114Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig957 99026..99114 +
1622931210.8897567-CDS-D-dichotoma_M_contig957:99969..1001301622931210.8897567-CDS-D-dichotoma_M_contig957:99969..100130Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig957 99970..100130 +
1690799666.963348-CDS-D-dichotoma_M_contig957:99969..1001301690799666.963348-CDS-D-dichotoma_M_contig957:99969..100130Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig957 99970..100130 +
1622931210.905758-CDS-D-dichotoma_M_contig957:101052..1011381622931210.905758-CDS-D-dichotoma_M_contig957:101052..101138Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig957 101053..101138 +
1690799666.972498-CDS-D-dichotoma_M_contig957:101052..1011381690799666.972498-CDS-D-dichotoma_M_contig957:101052..101138Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig957 101053..101138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig957.20278.1

>prot_D-dichotoma_M_contig957.20278.1 ID=prot_D-dichotoma_M_contig957.20278.1|Name=mRNA_D-dichotoma_M_contig957.20278.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=112bp
MVHTSAHIGKNSIPCIFGLHSRLLQRNMCRLVWLYRRLSRMPEETLLALL
VPTMVPNAQDEAHEATTGVAVKRQHLNVRDSSGGIRTGLPAFKNASGGIA
HIDLEFSTRSWI
back to top

mRNA from alignment at D-dichotoma_M_contig957:99026..101138+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig957.20278.1 ID=mRNA_D-dichotoma_M_contig957.20278.1|Name=mRNA_D-dichotoma_M_contig957.20278.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2113bp|location=Sequence derived from alignment at D-dichotoma_M_contig957:99026..101138+ (Dictyota dichotoma ODC1387m male)
ATGGTGCATACCTCCGCACACATTGGTAAGAATAGTATTCCATGCATATT
TGGTCTTCATTCACGCCTGCTCCAGCGAAATATGTGCAGGTGATGTATGC
GCCGCGTAATACCTCGGTCTGGCTAATGTCGTATTCACGTCGTGTTTGGC
TCACGTCTGGGTCACGTCATGTCTGGCCCACGTCATGTCTGGCCCACGTC
GTGTCTGGCTCAAGGCTTCTACCGGTTTCATGGAAATAGTATGCTGGTAG
AACCAAGCGAAGATAATTCCGGCGTCTCTTCGCCGTTGTAAAGAGACAGC
AGCAGGAAGATTATTGCTGGGACCAGTACGGTAGTGCTCGCGGGTGTAAC
GGAAACGGTCCAGTCCAGTCCAGTCCAGTCCAGTCCAGTCCAGTTCAGTA
CGTGAGGAAGAAAATAGTCTAAATCTGGCCCCAAAAAATGGCGAGCAAAC
TTTTGGGGCCAGATTTGGACTGCTTTTATGTTTCCTATAAATATACACCC
GACCGTCATCGTGAGAAGTTTTGTGCGGCCAGACTTGGACTGCTTTTATC
ACCATGTACTTCGTTACACTCTTGAGCGCTACTGTAGATGGAATATCGAT
GACATATGGTTACGACACGTACGGCACGTGCGCTCTTCATCATCGGTGAA
TCGTTTGAATCTCAGTACGCAGATAACTCGAGCACGCGCTGTACTATCGT
ACGCGTTGAGCAGCTGTGATAGATAGGTGATCAAGATACTGTAACTACTG
TACTCATTTGGGTGGGGGGTGTGCGATCGAGTATATACGGTCAAGATTCC
CCCGAGTCGCCCCGTTACTGACGGCACCACGAAAGTTAACAGGACTTGTG
GAGCATTTCTGGTGAGATTCCAAACGGTATCTAAAAGTATTTGCAAATTC
TTGAACCTCTCCCGATAACGTGCGATGGGATTCATTGAATGTAGGTTGGT
CTGGTTGTACCGACGATTATCCCGAATGCCGGAAGAGACTCTTTTGGCGT
TGCTTGTACCGACGATGGTCCCGAATGCCCAAGATGAAGCCCATGAAGCT
ACGACGGGGGTCGCCGTCAAGCGGCAACATTTAAACGTCAGGGACTCTTC
TGGCGGTGAGTGACAGCCAGCGAGCTCTTGCTGAAGAGAGACTACACGTG
GAACGAGGCCAGATGTAAAGTCGCTTGCGGCAGGGAATTTGAGGCGTACA
ACAAGCTACGATGACTCGATATAGAAGACAGATACGTTAAGTACAGATCA
ATCGGCGGCAAGGCGCACTGAGTGCCGGTGAACGAGGTAGAATGAAGCTC
TACAGCTTTATCGCCGCGGGGCTTTTGATCGCCGCAGCTGAGAATGCGAG
GGACAAAGAAGAGAAGGGTAGGCTTCGTCTTCTATCGGTGATGTTGTACA
CGTTAGTGTGCCAAATGAGGATAGACCGGACGCGATTGCCTCGTCAGTTC
GAGCGGATTCCATTTCCCTCGAGGACATCTCCCACACCGATGCCTAGACA
GACTATCAGTGCCGCAAAGCAGACTTTCCGGGACTACTCAACGTGTTGCG
GTTCCCTCAACGTCGGGTATGCAAGAACGGCTCCGTCTACTCTGGAGAGG
CTGCCTTTCTTCTCATCTATCGTTTCAGGTCAGCTCGCATGCCATACTCG
ACCGTCGATGTTGAAGGTACTGTATGACGAGTGGGGTCACACAATCACAG
AAGAGACACAGGACAGGACGTTCAGATCTTGTATGACTGTACTGTACATT
AGTAGGAATGTTTAACAGAGCGAGAGTGTAACAGAAGGGTTTGGCACACC
TACATGTTGTTTGTCGAACGGAAAGGCATGGTGCAACTTGTCCACAAGAC
TAATCTGGTTCAGGTGGAACCGAGTTGAACCGTACTCTCCAAGTTGTATT
CACGTAGCTGCTACTGTCGATTCGACTAGTCTTACCGATTGCTCGCACTT
TCGACGCCCCTTCGATCTGCTACCCTACCCTACCCTACCCTACCCATCGT
GACTTTCGTGCCCTTCGTCAACTCAAGGTATCCGAACCGGCTTACCGGCC
TTCAAGAACGCTTCGGGCGGGATTGCACACATCGATCTCGAATTTTCAAC
GAGGTCGTGGATT
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig957:99026..101138+

>mRNA_D-dichotoma_M_contig957.20278.1 ID=mRNA_D-dichotoma_M_contig957.20278.1|Name=mRNA_D-dichotoma_M_contig957.20278.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=672bp|location=Sequence derived from alignment at D-dichotoma_M_contig957:99026..101138+ (Dictyota dichotoma ODC1387m male)
ATGGTGCATACCTCCGCACACATTGGTAAGAATAGTATTCCATGCATATT
TGGTCTTCATTCACGCCTGCTCCAGCGAAATATGTGCAGATGGTGCATAC
CTCCGCACACATTGGTAAGAATAGTATTCCATGCATATTTGGTCTTCATT
CACGCCTGCTCCAGCGAAATATGTGCAGGTTGGTCTGGTTGTACCGACGA
TTATCCCGAATGCCGGAAGAGACTCTTTTGGCGTTGCTTGTACCGACGAT
GGTCCCGAATGCCCAAGATGAAGCCCATGAAGCTACGACGGGGGTCGCCG
TCAAGCGGCAACATTTAAACGTCAGGGACTCTTCTGGCGGTTGGTCTGGT
TGTACCGACGATTATCCCGAATGCCGGAAGAGACTCTTTTGGCGTTGCTT
GTACCGACGATGGTCCCGAATGCCCAAGATGAAGCCCATGAAGCTACGAC
GGGGGTCGCCGTCAAGCGGCAACATTTAAACGTCAGGGACTCTTCTGGCG
GTATCCGAACCGGCTTACCGGCCTTCAAGAACGCTTCGGGCGGGATTGCA
CACATCGATCTCGAATTTTCAACGAGGTCGTGGATTGTATCCGAACCGGC
TTACCGGCCTTCAAGAACGCTTCGGGCGGGATTGCACACATCGATCTCGA
ATTTTCAACGAGGTCGTGGATT
back to top