mRNA_D-dichotoma_M_contig956.20275.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig956.20275.1
Unique NamemRNA_D-dichotoma_M_contig956.20275.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig956.20275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig956contigD-dichotoma_M_contig956:230757..231876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1120
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig956.20275.1prot_D-dichotoma_M_contig956.20275.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig956 230864..231448 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931210.676-UTR-D-dichotoma_M_contig956:230756..2308631622931210.676-UTR-D-dichotoma_M_contig956:230756..230863Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig956 230757..230863 +
1690799666.8647428-UTR-D-dichotoma_M_contig956:230756..2308631690799666.8647428-UTR-D-dichotoma_M_contig956:230756..230863Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig956 230757..230863 +
1622931210.7158022-UTR-D-dichotoma_M_contig956:231448..2318761622931210.7158022-UTR-D-dichotoma_M_contig956:231448..231876Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig956 231449..231876 +
1690799666.8970377-UTR-D-dichotoma_M_contig956:231448..2318761690799666.8970377-UTR-D-dichotoma_M_contig956:231448..231876Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig956 231449..231876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931210.6935515-CDS-D-dichotoma_M_contig956:230863..2314481622931210.6935515-CDS-D-dichotoma_M_contig956:230863..231448Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig956 230864..231448 +
1690799666.878539-CDS-D-dichotoma_M_contig956:230863..2314481690799666.878539-CDS-D-dichotoma_M_contig956:230863..231448Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig956 230864..231448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig956.20275.1

>prot_D-dichotoma_M_contig956.20275.1 ID=prot_D-dichotoma_M_contig956.20275.1|Name=mRNA_D-dichotoma_M_contig956.20275.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=195bp
MTAVPTSSPTSLTSSATPTASPSSTDDSTTMTVVPTSSPTSTFHTQIPSV
GPTATPTLSLSSMPTASPTVSSSSTPTATPTAFISSAPTMTPTASPSSMP
TMTPTASPSSVHNVTLAPTSSPTSTTPTPTIPAPVLQPAVIPSTELPISS
PVSGGLPPVDDTSGASRRLQGVWSTASFCFSLAYYIVARAAYTA*
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mRNA from alignment at D-dichotoma_M_contig956:230757..231876+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig956.20275.1 ID=mRNA_D-dichotoma_M_contig956.20275.1|Name=mRNA_D-dichotoma_M_contig956.20275.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1120bp|location=Sequence derived from alignment at D-dichotoma_M_contig956:230757..231876+ (Dictyota dichotoma ODC1387m male)
TATCCGGCGTGCCGACAGTCACTCCAACAAGTTCCCCGACTCCAACGTCC
CCGACGTCGAGCGCAACGCCCACAGCCTCCCCATCGAGCACGGATGATAG
CACCACAATGACGGCCGTCCCGACGAGTTCCCCGACGTCCCTGACGTCGA
GCGCAACGCCCACAGCCTCCCCATCTAGCACAGATGATAGCACCACAATG
ACGGTGGTCCCGACGAGTTCCCCGACTTCAACGTTCCATACCCAGATACC
TTCGGTGGGGCCCACCGCGACGCCGACATTATCCCTGTCAAGTATGCCTA
CCGCGAGTCCCACAGTCTCCTCATCAAGCACGCCGACCGCCACGCCCACA
GCCTTCATATCAAGCGCACCCACCATGACGCCCACGGCATCCCCGTCAAG
CATGCCTACTATGACTCCCACAGCATCGCCATCGAGCGTACACAACGTAA
CACTCGCCCCGACAAGTTCCCCCACTTCAACGACCCCGACCCCAACGATC
CCTGCACCGGTCCTGCAACCCGCAGTGATTCCGAGCACGGAACTGCCCAT
ATCATCCCCAGTGAGCGGAGGTCTCCCTCCTGTTGATGATACGAGTGGAG
CTTCGAGGCGTCTGCAGGGTGTCTGGAGCACGGCAAGCTTTTGCTTCAGC
CTGGCATACTACATAGTAGCTCGAGCAGCTTATACGGCCTAGGTCGGTGG
ATCCTGAACGTGTCCTGGGTACCCCTCGTCGTGTGAAAAATGTCCGTTTT
ACCGTCGGCGGTCATGGAATTTGGGGTGCAGTTTATGATTCTTGTCGGAC
GGATGTTGCGCAAGGTGTTCTGTAGAGATCGAGTCCCATGACCAACGTAA
TACTCATCGGGTGAGGGGGGTTGTTGAAGATGACGTTGGCAACAACACGA
GAAGCTTCCGTCGAGTTTCGCGGGCTGCCCGAAACGATCGTTGAAGAGGT
GAAAAAAATGGAGTTTGCAATATGCAAGATGTGGGGGTATGTATGCCCGA
ACGAAGTCGAACGAGTTACGTACGCTGCGTCCCAAACGATTGGCAACAGT
ACTGTGTAGGTGTTGAGGGAACGGGGCCGCAAAATGTTGTCGCTCTGTAT
GGTGCTGCCGTCGATTCGTA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig956:230757..231876+

>mRNA_D-dichotoma_M_contig956.20275.1 ID=mRNA_D-dichotoma_M_contig956.20275.1|Name=mRNA_D-dichotoma_M_contig956.20275.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1170bp|location=Sequence derived from alignment at D-dichotoma_M_contig956:230757..231876+ (Dictyota dichotoma ODC1387m male)
ATGACGGCCGTCCCGACGAGTTCCCCGACGTCCCTGACGTCGAGCGCAAC
GCCCACAGCCTCCCCATCTAGCACAGATGATAGCACCACAATGACGGTGG
TCCCGACGAGTTCCCCGACTTCAACGTTCCATACCCAGATACCTTCGGTG
GGGCCCACCGCGACGCCGACATTATCCCTGTCAAGTATGCCTACCGCGAG
TCCCACAGTCTCCTCATCAAGCACGCCGACCGCCACGCCCACAGCCTTCA
TATCAAGCGCACCCACCATGACGCCCACGGCATCCCCGTCAAGCATGCCT
ACTATGACTCCCACAGCATCGCCATCGAGCGTACACAACGTAACACTCGC
CCCGACAAGTTCCCCCACTTCAACGACCCCGACCCCAACGATCCCTGCAC
CGGTCCTGCAACCCGCAGTGATTCCGAGCACGGAACTGCCCATATCATCC
CCAGTGAGCGGAGGTCTCCCTCCTGTTGATGATACGAGTGGAGCTTCGAG
GCGTCTGCAGGGTGTCTGGAGCACGGCAAGCTTTTGCTTCAGCCTGGCAT
ACTACATAGTAGCTCGAGCAGCTTATACGGCCTAGATGACGGCCGTCCCG
ACGAGTTCCCCGACGTCCCTGACGTCGAGCGCAACGCCCACAGCCTCCCC
ATCTAGCACAGATGATAGCACCACAATGACGGTGGTCCCGACGAGTTCCC
CGACTTCAACGTTCCATACCCAGATACCTTCGGTGGGGCCCACCGCGACG
CCGACATTATCCCTGTCAAGTATGCCTACCGCGAGTCCCACAGTCTCCTC
ATCAAGCACGCCGACCGCCACGCCCACAGCCTTCATATCAAGCGCACCCA
CCATGACGCCCACGGCATCCCCGTCAAGCATGCCTACTATGACTCCCACA
GCATCGCCATCGAGCGTACACAACGTAACACTCGCCCCGACAAGTTCCCC
CACTTCAACGACCCCGACCCCAACGATCCCTGCACCGGTCCTGCAACCCG
CAGTGATTCCGAGCACGGAACTGCCCATATCATCCCCAGTGAGCGGAGGT
CTCCCTCCTGTTGATGATACGAGTGGAGCTTCGAGGCGTCTGCAGGGTGT
CTGGAGCACGGCAAGCTTTTGCTTCAGCCTGGCATACTACATAGTAGCTC
GAGCAGCTTATACGGCCTAG
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