mRNA_D-dichotoma_M_contig955.20269.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig955.20269.1 vs. uniprot
Match: D8LC09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC09_ECTSI) HSP 1 Score: 347 bits (890), Expect = 2.380e-101 Identity = 254/702 (36.18%), Postives = 341/702 (48.58%), Query Frame = 2
Query: 287 RTSTLSTVMLAGLIGRAPMSSAGPVCHRVASQWTVVFKASCTEWYANGGLERGEPVPDVCSQEFSGDVKVKEFPWNGEVMIVDNENPKSDFTRQQPEQDVAHYRAGIVLVQSSWDVGSDGFWSPRQGTNTESINASVVYVTTEAEEQKFVKFHSLVEYNPSSPAGKNGDRRL-EGHTYEGVYDFDGGIDDPEGTSVPLWMGDEQLSTGQEDEEGSEGIYHPDYIYSYDYVSYDFSYSVELSYLDSYMFDVAEDEALTDDS-----------------------VRSITAVDIYVCVDEENSLAEMRFYCDPDNTGTATCYEKAAGANTRALNIHGFEMFCAKQCLTGELEGLWCDIFGLDGCRMCSTDCSALCDGAGSCLPCVSCPPDNYHPVSGSTPAPAPTDGGSPYP---GQPT-------------------------------------------------PAPGNAEPSAQT--PSXXPGPTGF-EPV-------LTLAPATDFSGVHSTY-----------------------TPAPATTAGSMPSPGSMLRGGS--ETAAPTWXXXXXXXXXXXXXXXXXXXXXXXXXQDMPTAAPTSV---GVDVLHFV---------CTPGDADSCYNELLAIERDVLEDSGRGLTCEESCIVNGGPWCKAYGLGGCRFCHLNCVDFCVDEGLPEGCLCFEC 2023
R ++L+ V+L + +A ++ A P C RVA QW V+F A CT+W+ G RG P P+ C Q+F+ V V+ FPWN +V+IVDNE P DF+ Q PEQ V + AGIV++Q+SWD+ W PR ++ E I A V Y+ ++ ++ F V Y P P R L E + D + I + T PL Q +TG + Y P Y+YSY+ SYDFS EL LDSY ++ + + S V+S+T++DIYVC DE+N+LAE+RF CDP+N G A C+ +A N RAL+IHG +M+C K CL G+ GLWCDIFGLDGCRMC+ DC+++CDG SC C+ C P P+PTDG P G PT PAP + S PS PT EP ++AP T T +P T+ GS RGG ET +PT XXXXXXXXXXXXX +++ TA+PTS G+ ++ CTPGD+D+CY++L + +L + RGLTCEESC+V GG WC A GL GCRFC +C +FC ++GLP+ C C EC
Sbjct: 8 RAASLAAVLLG--LQQAGLAFAAPTCERVAGQWAVIFSAECTQWFQQIGSRRGSP-PESCIQQFTSAVLVENFPWNDDVVIVDNETPGDDFSLQ-PEQPVLKFGAGIVIMQTSWDMEDGSLWQPRMSSSAERIYAEVEYIASD--NHSYLDFDLSVRYEPEHPPPGRLMRALSEDNDAPDAADVEE-ILELSATPPPL----AQDATG-------DLSYEPAYVYSYELESYDFSXXXELEDLDSYSYEFIDSMFEEESSPYSQTYSYNFRGEEEVSVPPPSAVQSVTSLDIYVCTDEDNNLAELRFNCDPENDGDAQCFAEAGEPNVRALHIHGMDMYCDKVCLAGQEGGLWCDIFGLDGCRMCTDDCTSICDGEASCSSCILCGAPRV------PPPPSPTDGSRGIPIMSGSPTMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMXXXXXXXSSTHMTPAPSFEDGSMVPLEPSYMAAPTSSAEPTDDREIDSPSMAPTTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKETQSPTTSDGS--------RGGLNFETQSPT-----ASNDMXXXXXXXXXXXXXSTSREIATASPTSSTSRGIPIMSASPASGVTFTECTPGDSDTCYDQLEPSMKGLLVERSRGLTCEESCLVGGGLWCDALGLSGCRFCATSCDNFCTEQGLPDDCECIEC 672
BLAST of mRNA_D-dichotoma_M_contig955.20269.1 vs. uniprot
Match: A0A6H5JD92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD92_9PHAE) HSP 1 Score: 241 bits (614), Expect = 5.310e-61 Identity = 163/501 (32.53%), Postives = 226/501 (45.11%), Query Frame = 2
Query: 287 RTSTLSTVMLAGLIGRAPMSSAGPVCHRVASQWTVVFKASCTEWYANGGLERGEPVPDVCSQE---------------FSGDVKVKEFPWNGEVMIVDNENPKSDFTRQQPEQDVAHYRAGIVLVQSSWDVGSDGFWSPRQGTNTESINASVVYVTTEAEEQKFVKFHSLVEYNPSSP-------AGKNGDRRLEGHTYEGVYDFDGGIDDPEGTSVPLWMGDEQLSTGQEDEEGSEGIYHPDYIYSYDYVSYDFSYSVELSYLDSYMFDVAE---DEALTDDS--------------------VRSITAVDIYVCVDEENSLAEMRFYCDPDNTGTATCYEKAAGANTRALNIH---------------------------------------------------------------------------GFEMFCAKQCLTGELEGLWCDIFGLDGCRMCSTDCSALCDGAGSCLPCVSCPPDNYHPVSGSTPAPAPTDG 1429
R + L+ V+L + +A ++ A P C RVASQW V+F A CT+W+ G RG P P+ C Q+ F+ V V+ FPWN +V+IVDNE P DF+ Q PEQ V + AGIV++Q+SWD+ W PR ++ E + A V Y+ ++ ++ F V Y P P A D+ + E + + T PL +D G Y P YIYSY+ SYDFSY+ EL LDSY ++ + +E ++ S V+S+T++DIYVC DE+ +LAE+RF CD +N G A C+ +A N RAL IH G +M+C K CL G+ GLWCDIFGLDGCRMC+ DC+++CDG SC C+ C + PAP+PTDG
Sbjct: 8 RVAFLAAVLLG--LQQAGLAFAAPTCERVASQWAVIFSAECTQWFQQIGSRRGSP-PESCIQDPTWNHCMSNMRHDKQFTSAVLVENFPWNDDVVIVDNETPGDDFSLQ-PEQPVLKFGAGIVIMQTSWDMEDGSLWQPRMSSSAERVYAEVEYIASD--NHSYLDFDLSVRYEPEHPPPGSLARALSEDDKAPDEADVEEILELSA-------TPPPL----------AQDANGDLS-YEPAYIYSYELESYDFSYNFELEDLDSYSYEFIDSMFEEEISPYSQTYSYNFRGGEEVSVPPPSAVQSVTSLDIYVCTDEDINLAELRFNCDLENDGDAQCFAEAGEPNVRALQIHVRMKKYIEFPRLKFWCDVVLLHLCLIFVISCVFYFLCVGSKCECEERHGTKLSHLDIRYRKSDTVTLAVTRQAQQGMDMYCDKVCLPGQEGGLWCDIFGLDGCRMCTDDCTSICDGEASCSSCILCGAPR------APPAPSPTDG 478 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig955.20269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig955.20269.1 >prot_D-dichotoma_M_contig955.20269.1 ID=prot_D-dichotoma_M_contig955.20269.1|Name=mRNA_D-dichotoma_M_contig955.20269.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=581bp MRTSTLSTVMLAGLIGRAPMSSAGPVCHRVASQWTVVFKASCTEWYANGGback to top mRNA from alignment at D-dichotoma_M_contig955:116184..122493+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig955.20269.1 ID=mRNA_D-dichotoma_M_contig955.20269.1|Name=mRNA_D-dichotoma_M_contig955.20269.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=6310bp|location=Sequence derived from alignment at D-dichotoma_M_contig955:116184..122493+ (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig955:116184..122493+ >mRNA_D-dichotoma_M_contig955.20269.1 ID=mRNA_D-dichotoma_M_contig955.20269.1|Name=mRNA_D-dichotoma_M_contig955.20269.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=3486bp|location=Sequence derived from alignment at D-dichotoma_M_contig955:116184..122493+ (Dictyota dichotoma ODC1387m male)back to top |