mRNA_D-dichotoma_M_contig954.20259.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig954.20259.1
Unique NamemRNA_D-dichotoma_M_contig954.20259.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig954.20259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig954contigD-dichotoma_M_contig954:113549..114548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size1000
Cds size591
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig954.20259.1prot_D-dichotoma_M_contig954.20259.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig954 113881..114471 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931207.2775943-UTR-D-dichotoma_M_contig954:113548..1138801622931207.2775943-UTR-D-dichotoma_M_contig954:113548..113880Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig954 113549..113880 +
1690799665.159964-UTR-D-dichotoma_M_contig954:113548..1138801690799665.159964-UTR-D-dichotoma_M_contig954:113548..113880Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig954 113549..113880 +
1622931207.310748-UTR-D-dichotoma_M_contig954:114471..1145481622931207.310748-UTR-D-dichotoma_M_contig954:114471..114548Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig954 114472..114548 +
1690799665.1887326-UTR-D-dichotoma_M_contig954:114471..1145481690799665.1887326-UTR-D-dichotoma_M_contig954:114471..114548Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig954 114472..114548 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931207.2929943-CDS-D-dichotoma_M_contig954:113880..1144711622931207.2929943-CDS-D-dichotoma_M_contig954:113880..114471Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig954 113881..114471 +
1690799665.1751785-CDS-D-dichotoma_M_contig954:113880..1144711690799665.1751785-CDS-D-dichotoma_M_contig954:113880..114471Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig954 113881..114471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig954.20259.1

>prot_D-dichotoma_M_contig954.20259.1 ID=prot_D-dichotoma_M_contig954.20259.1|Name=mRNA_D-dichotoma_M_contig954.20259.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=197bp
MRATMGWLIFDGVSALCSTYKSPFNQGRENLRHIYSTCSMQILCTWYLQP
DADEVPSPPSTSRLWFTLCHLFLRSQPTRKNCPRLQPCCGHTTFDEIKCP
PCVGCALLEAETSPRTPWMDPSRSSSSWRATYVAGTRLNSRASCTQRTAK
IDIHRRDPAKIAPAVERSNHKTHLVCPQTHRPHFVSQRLRASSSTS*
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mRNA from alignment at D-dichotoma_M_contig954:113549..114548+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig954.20259.1 ID=mRNA_D-dichotoma_M_contig954.20259.1|Name=mRNA_D-dichotoma_M_contig954.20259.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1000bp|location=Sequence derived from alignment at D-dichotoma_M_contig954:113549..114548+ (Dictyota dichotoma ODC1387m male)
GCAGTTCAAGAATACGCTGTTTGGTAGTAGTTATGGGGGTGCATACAAAT
TTACAGGGAACTTACTTCCCAATCCACGACTTTCGTCGCGCATGACGACC
TTGGAGTAGGTTGACTCAAGGAACAAAGCAATACGCGGCAGACAGGCGAC
AACGGGTAGAGGAGAGAGCGCCCACAGGCTTCCTACTTCAGTGTGATAGC
CAGTTGTGTGTCAACATATCCCTCCGCCTCAAATGCTGCTACGTCCATCT
ACCACGGGCTCGACGAAAACATGAAACTGAGGCAAATGCCGTTTTTCTGT
TGCTATGGTTACAACGGTCACGCCACGAAGCAATGAGAGCCACCATGGGC
TGGCTCATATTTGATGGTGTCTCTGCCCTTTGCTCTACCTACAAAAGTCC
ATTCAATCAAGGCCGAGAAAATTTACGTCACATATATAGTACGTGCTCCA
TGCAGATTTTGTGCACGTGGTACCTCCAACCTGACGCAGATGAAGTCCCA
TCCCCACCTTCCACCAGTCGTCTCTGGTTCACACTCTGCCACCTCTTTCT
CCGCTCCCAGCCTACACGCAAAAATTGCCCCCGTCTACAACCCTGCTGCG
GACACACGACTTTCGATGAAATCAAGTGTCCACCATGTGTCGGGTGTGCA
CTTCTTGAAGCCGAGACATCGCCTCGGACACCTTGGATGGACCCCTCCCG
CTCATCCAGCTCATGGCGCGCAACGTATGTCGCCGGAACCCGTCTCAACT
CAAGAGCATCGTGCACGCAACGAACGGCGAAAATTGATATCCATCGACGT
GACCCTGCGAAGATAGCCCCAGCGGTCGAACGATCGAACCACAAGACGCA
CCTCGTATGCCCGCAGACCCATCGCCCACACTTCGTGTCTCAGAGGTTGC
GAGCATCATCAAGCACGTCTTGAGATTACTGCTTCAATTTAATTCAACCA
AGTCTAGGGCTGCTTTCACAGCGGACGCACCACGAGTTGCACAGCACCCT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig954:113549..114548+

>mRNA_D-dichotoma_M_contig954.20259.1 ID=mRNA_D-dichotoma_M_contig954.20259.1|Name=mRNA_D-dichotoma_M_contig954.20259.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1182bp|location=Sequence derived from alignment at D-dichotoma_M_contig954:113549..114548+ (Dictyota dichotoma ODC1387m male)
ATGAGAGCCACCATGGGCTGGCTCATATTTGATGGTGTCTCTGCCCTTTG
CTCTACCTACAAAAGTCCATTCAATCAAGGCCGAGAAAATTTACGTCACA
TATATAGTACGTGCTCCATGCAGATTTTGTGCACGTGGTACCTCCAACCT
GACGCAGATGAAGTCCCATCCCCACCTTCCACCAGTCGTCTCTGGTTCAC
ACTCTGCCACCTCTTTCTCCGCTCCCAGCCTACACGCAAAAATTGCCCCC
GTCTACAACCCTGCTGCGGACACACGACTTTCGATGAAATCAAGTGTCCA
CCATGTGTCGGGTGTGCACTTCTTGAAGCCGAGACATCGCCTCGGACACC
TTGGATGGACCCCTCCCGCTCATCCAGCTCATGGCGCGCAACGTATGTCG
CCGGAACCCGTCTCAACTCAAGAGCATCGTGCACGCAACGAACGGCGAAA
ATTGATATCCATCGACGTGACCCTGCGAAGATAGCCCCAGCGGTCGAACG
ATCGAACCACAAGACGCACCTCGTATGCCCGCAGACCCATCGCCCACACT
TCGTGTCTCAGAGGTTGCGAGCATCATCAAGCACGTCTTGAATGAGAGCC
ACCATGGGCTGGCTCATATTTGATGGTGTCTCTGCCCTTTGCTCTACCTA
CAAAAGTCCATTCAATCAAGGCCGAGAAAATTTACGTCACATATATAGTA
CGTGCTCCATGCAGATTTTGTGCACGTGGTACCTCCAACCTGACGCAGAT
GAAGTCCCATCCCCACCTTCCACCAGTCGTCTCTGGTTCACACTCTGCCA
CCTCTTTCTCCGCTCCCAGCCTACACGCAAAAATTGCCCCCGTCTACAAC
CCTGCTGCGGACACACGACTTTCGATGAAATCAAGTGTCCACCATGTGTC
GGGTGTGCACTTCTTGAAGCCGAGACATCGCCTCGGACACCTTGGATGGA
CCCCTCCCGCTCATCCAGCTCATGGCGCGCAACGTATGTCGCCGGAACCC
GTCTCAACTCAAGAGCATCGTGCACGCAACGAACGGCGAAAATTGATATC
CATCGACGTGACCCTGCGAAGATAGCCCCAGCGGTCGAACGATCGAACCA
CAAGACGCACCTCGTATGCCCGCAGACCCATCGCCCACACTTCGTGTCTC
AGAGGTTGCGAGCATCATCAAGCACGTCTTGA
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