mRNA_D-dichotoma_M_contig946.20177.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig946.20177.1
Unique NamemRNA_D-dichotoma_M_contig946.20177.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig946.20177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig946contigD-dichotoma_M_contig946:743..995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size233
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig946.20177.1prot_D-dichotoma_M_contig946.20177.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig946 743..960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.8291633-CDS-D-dichotoma_M_contig946:742..8871622931194.8291633-CDS-D-dichotoma_M_contig946:742..887Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig946 743..887 +
1690799659.1722898-CDS-D-dichotoma_M_contig946:742..8871690799659.1722898-CDS-D-dichotoma_M_contig946:742..887Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig946 743..887 +
1622931194.8557863-CDS-D-dichotoma_M_contig946:907..9601622931194.8557863-CDS-D-dichotoma_M_contig946:907..960Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig946 908..960 +
1690799659.1856282-CDS-D-dichotoma_M_contig946:907..9601690799659.1856282-CDS-D-dichotoma_M_contig946:907..960Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig946 908..960 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931194.8753147-UTR-D-dichotoma_M_contig946:960..9951622931194.8753147-UTR-D-dichotoma_M_contig946:960..995Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig946 961..995 +
1690799659.1971672-UTR-D-dichotoma_M_contig946:960..9951690799659.1971672-UTR-D-dichotoma_M_contig946:960..995Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig946 961..995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig946.20177.1

>prot_D-dichotoma_M_contig946.20177.1 ID=prot_D-dichotoma_M_contig946.20177.1|Name=mRNA_D-dichotoma_M_contig946.20177.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=66bp
MGYGICPSYPLLFLARLCAGRTIPSTSSIERILSRGPDKPVWSFAGRPEV
VAADAPVFAEGDISG*
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mRNA from alignment at D-dichotoma_M_contig946:743..995+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig946.20177.1 ID=mRNA_D-dichotoma_M_contig946.20177.1|Name=mRNA_D-dichotoma_M_contig946.20177.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=253bp|location=Sequence derived from alignment at D-dichotoma_M_contig946:743..995+ (Dictyota dichotoma ODC1387m male)
ATGGGCTACGGCATCTGCCCATCCTATCCCCTACTGTTCCTAGCAAGGTT
GTGCGCTGGACGCACTATCCCCTCGACCTCCAGTATTGAGCGAATCCTTT
CCCGCGGCCCCGACAAGCCTGTCTGGTCATTTGCCGGTCGACCCGAACGA
CCTTGGACGGCCTTAAAGTAGTCGCCGCTGATGCGCCCGTCTTCGCTGAA
GGAGATATCAGCGGGTAAGCTGACATCGCCGTCGTCTCGGGCGGGAACGT
CAA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig946:743..995+

>mRNA_D-dichotoma_M_contig946.20177.1 ID=mRNA_D-dichotoma_M_contig946.20177.1|Name=mRNA_D-dichotoma_M_contig946.20177.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=396bp|location=Sequence derived from alignment at D-dichotoma_M_contig946:743..995+ (Dictyota dichotoma ODC1387m male)
ATGGGCTACGGCATCTGCCCATCCTATCCCCTACTGTTCCTAGCAAGGTT
GTGCGCTGGACGCACTATCCCCTCGACCTCCAGTATTGAGCGAATCCTTT
CCCGCGGCCCCGACAAGCCTGTCTGGTCATTTGCCGGTCGACCCGATGGG
CTACGGCATCTGCCCATCCTATCCCCTACTGTTCCTAGCAAGGTTGTGCG
CTGGACGCACTATCCCCTCGACCTCCAGTATTGAGCGAATCCTTTCCCGC
GGCCCCGACAAGCCTGTCTGGTCATTTGCCGGTCGACCCGAAGTAGTCGC
CGCTGATGCGCCCGTCTTCGCTGAAGGAGATATCAGCGGGTAAAAGTAGT
CGCCGCTGATGCGCCCGTCTTCGCTGAAGGAGATATCAGCGGGTAA
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