mRNA_D-dichotoma_M_contig945.20176.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig945.20176.1
Unique NamemRNA_D-dichotoma_M_contig945.20176.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig945.20176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig945contigD-dichotoma_M_contig945:146237..147217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size920
Cds size642
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig945.20176.1prot_D-dichotoma_M_contig945.20176.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig945 146237..146940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931193.2838945-CDS-D-dichotoma_M_contig945:146236..1468371622931193.2838945-CDS-D-dichotoma_M_contig945:146236..146837Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig945 146237..146837 -
1690799658.4248126-CDS-D-dichotoma_M_contig945:146236..1468371690799658.4248126-CDS-D-dichotoma_M_contig945:146236..146837Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig945 146237..146837 -
1622931193.334768-CDS-D-dichotoma_M_contig945:146899..1469401622931193.334768-CDS-D-dichotoma_M_contig945:146899..146940Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig945 146900..146940 -
1690799658.4348226-CDS-D-dichotoma_M_contig945:146899..1469401690799658.4348226-CDS-D-dichotoma_M_contig945:146899..146940Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig945 146900..146940 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931193.3523965-UTR-D-dichotoma_M_contig945:146940..1472171622931193.3523965-UTR-D-dichotoma_M_contig945:146940..147217Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig945 146941..147217 -
1690799658.4450614-UTR-D-dichotoma_M_contig945:146940..1472171690799658.4450614-UTR-D-dichotoma_M_contig945:146940..147217Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig945 146941..147217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig945.20176.1

>prot_D-dichotoma_M_contig945.20176.1 ID=prot_D-dichotoma_M_contig945.20176.1|Name=mRNA_D-dichotoma_M_contig945.20176.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=214bp
MLQRPNAPLKLCLYHTQTIAPRKPLAPHARSINHTPSRITQNHPRTCHRC
PETTQIISLHRALRGQIANPTTDQTITYEPIAASYFIASTRDSQYYPRSH
VTRNLPCSSPRTQPQNMAKPNVITSQICESLVRHLANPQTLNHTRQNPTA
AVHPSRHLMSSCVTLGTPSILLRYCSHPQNTTAQIALCARCSRDTSPFTE
NQSHAWTAKLDRLI
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mRNA from alignment at D-dichotoma_M_contig945:146237..147217-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig945.20176.1 ID=mRNA_D-dichotoma_M_contig945.20176.1|Name=mRNA_D-dichotoma_M_contig945.20176.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=981bp|location=Sequence derived from alignment at D-dichotoma_M_contig945:146237..147217- (Dictyota dichotoma ODC1387m male)
ACGCGAAAGATGATGAATGGTCTCCCTCCACCCTAGCCAAGGGCGCATTC
AGGCTCCAGTTTTGTTCCTCATCATTAAGACCGGACACAGGAAGGGCACC
TAGCATGCGCTCTCGTCCACTACCATCTATGAATAATCACCCGTATACAC
TGTACTTCACATGTCACCAACCATGGATCATTCTCCAAGGCTATACCGGC
AAGGCTAGATCACTACGCTGTAAACAACAGAATACTGCAACCAAACAGGG
ATAGTATACTGTACTCGATCAGGGATTATGCTCCAGCGCCCCAATGCCCC
TCTAAAACTCTGTCTGTAGTCCCAAATGACCCAACAGACGAGTTTGACTA
CTCACGCTGTAGCATGATACCCAGGCCAAGTCACACTCAAACCATAGCAC
CTCGCAAACCACTCGCGCCTCACGCGCGGTCAATCAATCACACACCATCG
CGTATCACGCAGAACCATCCCCGAACATGTCACCGTTGCCCGGAAACCAC
TCAAATCATATCACTCCATCGCGCACTACGCGGACAGATCGCTAACCCAA
CCACAGATCAGACCATCACATACGAACCCATCGCGGCCTCATACTTCATC
GCATCTACGCGCGATAGCCAATATTACCCCAGATCGCACGTTACGCGAAA
CTTGCCATGTTCATCACCTCGCACCCAACCGCAGAACATGGCAAAACCTA
ATGTGATCACCAGTCAGATCTGTGAAAGTCTTGTCCGACATCTCGCGAAC
CCGCAGACACTAAATCACACGCGACAGAACCCCACTGCTGCGGTACATCC
ATCACGTCATCTCATGTCCTCGTGCGTGACGCTCGGAACCCCTTCAATCT
TGCTACGCTACTGCAGCCATCCGCAAAACACTACTGCCCAGATTGCTCTT
TGCGCGCGATGCTCACGGGATACTTCACCCTTCACAGAAAACCAATCCCA
CGCTTGGACCGCGAAACTTGACAGGCTAATT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig945:146237..147217-

>mRNA_D-dichotoma_M_contig945.20176.1 ID=mRNA_D-dichotoma_M_contig945.20176.1|Name=mRNA_D-dichotoma_M_contig945.20176.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1284bp|location=Sequence derived from alignment at D-dichotoma_M_contig945:146237..147217- (Dictyota dichotoma ODC1387m male)
ATGCTCCAGCGCCCCAATGCCCCTCTAAAACTCTGTCTGTAATGCTCCAG
CGCCCCAATGCCCCTCTAAAACTCTGTCTGTATCACACTCAAACCATAGC
ACCTCGCAAACCACTCGCGCCTCACGCGCGGTCAATCAATCACACACCAT
CGCGTATCACGCAGAACCATCCCCGAACATGTCACCGTTGCCCGGAAACC
ACTCAAATCATATCACTCCATCGCGCACTACGCGGACAGATCGCTAACCC
AACCACAGATCAGACCATCACATACGAACCCATCGCGGCCTCATACTTCA
TCGCATCTACGCGCGATAGCCAATATTACCCCAGATCGCACGTTACGCGA
AACTTGCCATGTTCATCACCTCGCACCCAACCGCAGAACATGGCAAAACC
TAATGTGATCACCAGTCAGATCTGTGAAAGTCTTGTCCGACATCTCGCGA
ACCCGCAGACACTAAATCACACGCGACAGAACCCCACTGCTGCGGTACAT
CCATCACGTCATCTCATGTCCTCGTGCGTGACGCTCGGAACCCCTTCAAT
CTTGCTACGCTACTGCAGCCATCCGCAAAACACTACTGCCCAGATTGCTC
TTTGCGCGCGATGCTCACGGGATACTTCACCCTTCACAGAAAACCAATCC
CACGCTTGGACCGCGAAACTTGACAGGCTAATTTCACACTCAAACCATAG
CACCTCGCAAACCACTCGCGCCTCACGCGCGGTCAATCAATCACACACCA
TCGCGTATCACGCAGAACCATCCCCGAACATGTCACCGTTGCCCGGAAAC
CACTCAAATCATATCACTCCATCGCGCACTACGCGGACAGATCGCTAACC
CAACCACAGATCAGACCATCACATACGAACCCATCGCGGCCTCATACTTC
ATCGCATCTACGCGCGATAGCCAATATTACCCCAGATCGCACGTTACGCG
AAACTTGCCATGTTCATCACCTCGCACCCAACCGCAGAACATGGCAAAAC
CTAATGTGATCACCAGTCAGATCTGTGAAAGTCTTGTCCGACATCTCGCG
AACCCGCAGACACTAAATCACACGCGACAGAACCCCACTGCTGCGGTACA
TCCATCACGTCATCTCATGTCCTCGTGCGTGACGCTCGGAACCCCTTCAA
TCTTGCTACGCTACTGCAGCCATCCGCAAAACACTACTGCCCAGATTGCT
CTTTGCGCGCGATGCTCACGGGATACTTCACCCTTCACAGAAAACCAATC
CCACGCTTGGACCGCGAAACTTGACAGGCTAATT
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