mRNA_D-dichotoma_M_contig945.20171.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig945.20171.1
Unique NamemRNA_D-dichotoma_M_contig945.20171.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig945.20171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig945contigD-dichotoma_M_contig945:120089..120632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size545
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931193.489654-CDS-D-dichotoma_M_contig945:120088..1204001622931193.489654-CDS-D-dichotoma_M_contig945:120088..120400Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig945 120089..120400 +
1690799658.493786-CDS-D-dichotoma_M_contig945:120088..1204001690799658.493786-CDS-D-dichotoma_M_contig945:120088..120400Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig945 120089..120400 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931193.5227172-UTR-D-dichotoma_M_contig945:120400..1206321622931193.5227172-UTR-D-dichotoma_M_contig945:120400..120632Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig945 120401..120632 +
1690799658.5047553-UTR-D-dichotoma_M_contig945:120400..1206321690799658.5047553-UTR-D-dichotoma_M_contig945:120400..120632Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig945 120401..120632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig945.20171.1prot_D-dichotoma_M_contig945.20171.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig945 120089..120400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig945.20171.1

>prot_D-dichotoma_M_contig945.20171.1 ID=prot_D-dichotoma_M_contig945.20171.1|Name=mRNA_D-dichotoma_M_contig945.20171.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=104bp
SSTKAVSFEYIHLFHRLAICSSSPFDHDEITLRHFLQKGRLLYPIHLHPR
LPFFDSRDHRRRHRPLAPHVKQTTWLEIRSPVRSSQCSRSLRRLPPRPVT
PAV*
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mRNA from alignment at D-dichotoma_M_contig945:120089..120632+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig945.20171.1 ID=mRNA_D-dichotoma_M_contig945.20171.1|Name=mRNA_D-dichotoma_M_contig945.20171.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=544bp|location=Sequence derived from alignment at D-dichotoma_M_contig945:120089..120632+ (Dictyota dichotoma ODC1387m male)
TCCTCGACAAAGGCCGTTTCCTTCGAGTATATACACCTATTCCATCGACT
CGCGATCTGTTCCTCCTCCCCGTTTGATCATGACGAAATCACGCTTCGGC
ACTTTCTTCAGAAGGGTCGGCTTCTCTATCCGATTCATCTCCACCCAAGA
CTGCCTTTCTTTGACAGTCGAGACCACCGAAGACGACATCGGCCGCTTGC
CCCCCACGTCAAGCAAACGACCTGGTTGGAGATACGCTCTCCTGTCAGGT
CAAGCCAGTGCTCCAGAAGTCTTCGAAGGCTCCCCCCGCGCCCGGTGACG
CCCGCGGTGTGATCGGCAGGAAGGCGATTTTCCGACTCGACGCCGTCGGA
TTCGGGCTCTTGGAGTCTTGCCCCGTGACCGCCTCCGGGACGATAGCCCC
GGCTTTCGGTGCAGCTGAGAGGGGTTTTGGCAGTAGCATAATTTTCTCGT
CGGGAAGAGACGATGATGGTCTAGCGTACGGGATTCGCGGTGGAGAGCGC
ATCCTCCACGCGCGGGGGTGATCCCCGTCCCAACCACTCCCGCC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig945:120089..120632+

>mRNA_D-dichotoma_M_contig945.20171.1 ID=mRNA_D-dichotoma_M_contig945.20171.1|Name=mRNA_D-dichotoma_M_contig945.20171.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=624bp|location=Sequence derived from alignment at D-dichotoma_M_contig945:120089..120632+ (Dictyota dichotoma ODC1387m male)
TCCTCGACAAAGGCCGTTTCCTTCGAGTATATACACCTATTCCATCGACT
CGCGATCTGTTCCTCCTCCCCGTTTGATCATGACGAAATCACGCTTCGGC
ACTTTCTTCAGAAGGGTCGGCTTCTCTATCCGATTCATCTCCACCCAAGA
CTGCCTTTCTTTGACAGTCGAGACCACCGAAGACGACATCGGCCGCTTGC
CCCCCACGTCAAGCAAACGACCTGGTTGGAGATACGCTCTCCTGTCAGGT
CAAGCCAGTGCTCCAGAAGTCTTCGAAGGCTCCCCCCGCGCCCGGTGACG
CCCGCGGTGTGATCCTCGACAAAGGCCGTTTCCTTCGAGTATATACACCT
ATTCCATCGACTCGCGATCTGTTCCTCCTCCCCGTTTGATCATGACGAAA
TCACGCTTCGGCACTTTCTTCAGAAGGGTCGGCTTCTCTATCCGATTCAT
CTCCACCCAAGACTGCCTTTCTTTGACAGTCGAGACCACCGAAGACGACA
TCGGCCGCTTGCCCCCCACGTCAAGCAAACGACCTGGTTGGAGATACGCT
CTCCTGTCAGGTCAAGCCAGTGCTCCAGAAGTCTTCGAAGGCTCCCCCCG
CGCCCGGTGACGCCCGCGGTGTGA
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