mRNA_D-dichotoma_M_contig945.20170.1 (mRNA) Dictyota dichotoma ODC1387m male
|
Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig945.20170.1 vs. uniprot
Match: D8LQK9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQK9_ECTSI) HSP 1 Score: 813 bits (2101), Expect = 6.280e-265 Identity = 605/1390 (43.53%), Postives = 755/1390 (54.32%), Query Frame = 3
Query: 84 METASIKTVEKKVLEMSQHASFHQHVSYNLSTILHALTAGKTDPAKIAEAFSRAKGLEVITRVISGEPVARPAVVSLSCSVARRVVDKFGEGVTEDQARGLVEALVHRLDLGISGDDAQTVECQVECASLISSVAGRNASTLLSGGALGAIEGLLERLAPHRSASISVVSSDSQSPGPAEEGSSSVSSRRSRPSLHVRVPSCPFYGTGPERPLWNSGAWGPRSILQPCSEAIERVSRSPEGRAVLEGRGAAGVLLATIRSCPEAREEGSDVALAYALKAVERMLTGKSPEQCAGLLVRCSAPRSPSPGEDDAGSDEPLPGPDGCIAECMETLLNVTETAPDTPGRIAAMCLWWAAGAGADTSGQRMGKVLSASLGRVGEAVDLEGSEEEGAAGA--TTADDWARLLRIPGED----ESGEDAPIAPRLRRDACRLLAALCLSKPGLKAVEEKLGAE-PQEAVQVLVEACGASEPRLASACLRIVERLAGSDFGGGQFVDAGVLDVGVKTGEKFEGGEGIEGQEDYLIGDTEAYALAAALGMSAALAELASKSALEVIDRGFRLAVRSLEEVAEFSGRPSAAVGKAALDMITFRLTRPDRPQGRTGGIDGVIPPLLKSDSSRASDGGVDAGGDEGPGLWGV--------AQNGVDAPMEVLRDGSMILSVMGAHPSDAKLQESGWRSLIAMDTGRGDVEKFFAG-GDGQERGREILKDCIERHGGDGAVAGQVAAMLERLVLEDDS-DGAHTSLASTPTEDMEANDRSTHFDAREGDGDPEGQSNSAPDEGGGDVPEPPPEVSGTPDHHDADPEDEEKPGEAVEADTEKSAELADAGPGEEPPCEGEGEPPAGENGDSGGDXXXXXXXXXXXGVSGTPDHHDADPEDAEKLVEAVEADAEKSEEPTDAGPADEPPGEGEGEPPAEE--NGDSGGAGGDDGDGAAEVALPTEEVEEKDGENVEGEHQQPXXXXXXDVDDSGGEADTTIAAAVETGAMATADATGASAAETGTAESESSEPAELGSPEEVLQRLTSVGRLALSDENDDDGDYDDNESPF-------DTLKSGGSAGEKSLPRFLFQEES----------DGVEEEEPSREXXXXXXXXXXXXXKEPSPAEIHLQKSWEDLEKLYGDVTGRSQILGGDNAEVVAVMKDPAELRRLVDASMGGPGGETPS---RAGVAASHLAMVDALAAATGALASSQKEIQRFLTMSRDLRGTSTWKEMEEAMKWTMDSLKGTVILFGPHTSQNLTKDLVICKNAEAASKLFKEAALNIKIVVVELAGEHAPNTVWRISPGQFEALPTNRKLMMLRHLRSLVVAYDHLPEMNRRDYTTALEIIKNREVLNKMGKACVEAEMLEEQRREAKLARDEERLRIGRR 4136
M++++ + VE+KVLEM+QHASFHQHVSYNLSTILHA +AGKTDP +IA+AFSRA+GLEVITRVISGEP+A+P+V+SL C A VVDKFG GV+ Q GLVEALV RLD G+SGDDAQTVECQVECA L+SS+AG+ AS L+ GGALGAIE +LE+L + S SI++PC EA+ERVSR+ EGRA E RG GVLLATIR PEA EEGSDVALA ALK VER+ TGKSPE CA L +R + ++ D+P C+ET+L V E P+ PG AA CLWW +GA + + + +L+A+ G E E E AA +AD W+ R G + E GE+ P A + + R LAALCL +PGL+ +E + E P+ + LV C +++P LA AC RI+ERLA G FVDAG L G FE E E + D EA+A+AAALG A LA+ K A V+D F+L+VR L V E+SGRP+AA K+ALD+IT RLTRPDRP+G G G ++ A + GGD + G A VD PME+L+D IL+VM AH +DA++Q+SGWRSLIAMDTGRGDVEKF+ G GDG + R++L+DC+ERHGGD VAGQVA +LE LVL+ DS DG +SL +A L+DA PGEE P P E + G + XXXXXXXX D K TDA E E+ NG+ +D DG EV +V E G VEG G+ T +A A E +A G S G AE +S E PE+VL + +G L G D + + D + GS ++ R LF D VE E+P + PS E+ L++SW LE L+ D+ GRSQILGG++A +VA M +P+ L+ V A + ET S R AA+ LA+V AL AATGAL +SQKE+QR+L MSRDLR TSTW ++ EAM+WTMDSLKGTVILF PHT+ LTK L +CKN ++A KLFKEAAL IKI+VVELAGEH PNTVWR++ F+ LP NRK+M LRHLRSLVVAYDHL + RRD TTALEIIKNREVLN MGK C++AE EE+R EAKLA +ERL++GRR
Sbjct: 5 MQSSTTEMVERKVLEMAQHASFHQHVSYNLSTILHAFSAGKTDPTEIAQAFSRARGLEVITRVISGEPMAKPSVLSLCCRTAVWVVDKFGSGVSHSQGGGLVEALVGRLDRGVSGDDAQTVECQVECARLMSSLAGQAASLLIDGGALGAIECMLEQLGGNHS-----------------------------------------------------------SIMRPCCEALERVSRTEEGRATFEERGTGGVLLATIRDFPEALEEGSDVALASALKVVERIFTGKSPEACA-LSLRAKS--------EEESCDDPHRPTFSDYDNCVETVLTVVEATPEAPGAAAATCLWWLSGASSKAPDRALSAILAAAAVADGTEATNEAREAEKAAAQLLVSADVWSWFSRGDGGEGDVQEEGENVPPARPV--EGARFLAALCLCRPGLECLEAAVERESPRRVAEALVTLCESADPLLARACFRIIERLAKGGTGPQVFVDAGALAAAAVAGALFEVEEDAE-----TVEDAEAHAIAAALGAVATLADAGGKDARPVVDDAFQLSVRCLARVGEYSGRPAAAAAKSALDVITVRLTRPDRPKGAAGVRGGGAAAGPAPEAGGAVVENDEGGGDTDKAVSGAPGDAKVEDAAEDVDTPMEILKDAGAILAVMKAHSTDARVQQSGWRSLIAMDTGRGDVEKFWTGVGDGPQSRRQMLRDCLERHGGDSLVAGQVADILEGLVLQGDSADGDGSSL---------------------------------------------------------------------------TASLSDA-PGEESPRL----PSDHEEAEGGDEDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDNIKHS--TDAAHQQE----------VEQVVNGED-----EDKDGGLEVPGDKGDVPEDKGAEVEG-----------------GDEATAVAEASE----GAGNADGGSDP-LGDAEGKS----ETLLPEDVLIEIGLIGTKTLEG-GGSSGSSDSSRTASVVAAVAEDAVTGEGSTTRPNVARSLFGSNGHANDKNSAAGDTVEAEKPEAKADCSLNASVVV----PSKEELKLRRSWAKLETLHSDIVGRSQILGGESAPMVAAMAEPSVLKERVSALLE----ETESGDSRDAFAAASLALVGALTAATGALNNSQKEVQRYLAMSRDLRVTSTWTDISEAMQWTMDSLKGTVILFTPHTAGGLTKALGLCKNMDSALKLFKEAALQIKIIVVELAGEHEPNTVWRVNQSLFKGLPENRKVMTLRHLRSLVVAYDHLSDEMRRDLTTALEIIKNREVLNMMGKYCIQAEAAEEKRWEAKLATADERLKVGRR 1187 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig945.20170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig945.20170.1 >prot_D-dichotoma_M_contig945.20170.1 ID=prot_D-dichotoma_M_contig945.20170.1|Name=mRNA_D-dichotoma_M_contig945.20170.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=1518bp METASIKTVEKKVLEMSQHASFHQHVSYNLSTILHALTAGKTDPAKIAEAback to top mRNA from alignment at D-dichotoma_M_contig945:50792..104563- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig945.20170.1 ID=mRNA_D-dichotoma_M_contig945.20170.1|Name=mRNA_D-dichotoma_M_contig945.20170.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=53772bp|location=Sequence derived from alignment at D-dichotoma_M_contig945:50792..104563- (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig945:50792..104563- >mRNA_D-dichotoma_M_contig945.20170.1 ID=mRNA_D-dichotoma_M_contig945.20170.1|Name=mRNA_D-dichotoma_M_contig945.20170.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=9108bp|location=Sequence derived from alignment at D-dichotoma_M_contig945:50792..104563- (Dictyota dichotoma ODC1387m male)back to top |