mRNA_D-dichotoma_M_contig929.20035.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig929.20035.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI) HSP 1 Score: 251 bits (642), Expect = 6.230e-76 Identity = 136/276 (49.28%), Postives = 189/276 (68.48%), Query Frame = 2
Query: 272 SRIVFALITGVLMTSSSLALSVVSPSEGMTVAAGTPFEVEWVGVGEQARFDIDLHYCGSYSFCFDD-NCGFFLASLCPEGE-EGCGDE-DGGYEVVMPEP--PTPGDGYRVRISQRGMDRVRCSEDFFLLGS-DAGDLGS--GASITVSAPTSQSVALAGDQYTVEWEYDNGFGSSVGRFKIDLYMS---EGPGDCGTWQTSICDKPERGCKDTTGDYNVVIPESTTSGTYRIRVGLQGDDSVFACSDTFDVLAAWSFA*TGSNGKSETPASSLAV 1066
S + A I G +S+ AL V++P+ TV +G P+ V W G RF+IDLHYCGSYS+CF++ CGF+LA++C EG+ GC + D +V PEP +GYR+RI++ G D RCS+DF+L+ S DA +G G +I V APT+ ++A+AG+ YTVE++YDNGFG +GRFKIDLY + +G GDCGTW TS+CDKP+ GC D+ GDYNVVIP + G Y+IRVGL GDD+++ACS +F+V+AA + A G+ G A+SL++
Sbjct: 7 SLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGSDTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAADA-AGAAGLWVDSATSLSL 281
BLAST of mRNA_D-dichotoma_M_contig929.20035.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE) HSP 1 Score: 246 bits (628), Expect = 5.070e-74 Identity = 119/232 (51.29%), Postives = 167/232 (71.98%), Query Frame = 2
Query: 326 ALSVVSPSEGMTVAAGTPFEVEWVGVGEQARFDIDLHYCGSYSFCFDD--NCGFFLASLCPEGEEGCG-DEDGGYEVVMPEPPT--PGDGYRVRISQRGMDRVRCSEDFFLLGS----DAGDLGSGASITVSAPTSQSVALAGDQYTVEWEYDNGFGSSVGRFKIDLYMSEGPGDCGTWQTSICDKPERGCKDTTGDYNVVIPESTTSGTYRIRVGLQGDDSVFACSDTFDV 994
AL V++P+ +VA+G P+ V W G RF++DLHYCGSYSFCF + +CGF++A++C E ++ C +D +V PEP +GYRVRIS+ G D RCSEDF+L+ S + G+ G G ++ V AP + ++A+AG+ YTVE++YDNGFG +GRFKIDLY +EG GDCG+W TS+CDKP+ GC+D+ GDY+VVIP + G Y+IRVGL GDDS++ACS +F++
Sbjct: 24 ALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVGTDNFRCSEDFYLVASADVLEFGEPG-GPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEI 254
BLAST of mRNA_D-dichotoma_M_contig929.20035.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI) HSP 1 Score: 243 bits (619), Expect = 6.350e-73 Identity = 125/245 (51.02%), Postives = 172/245 (70.20%), Query Frame = 2
Query: 287 ALITGVL--MTSSSLALSVVSPSEGMTVAAGTPFEVEWVGVGEQARFDIDLHYCGSYSFCFD--DNCGFFLASLCPEGEEGCGDEDGGY-EVVMPEPPT--PGDGYRVRISQRGMDRVRCSEDFFLLGS-DAGDLGSGASITVSAPTSQSVALAGDQYTVEWEYDNGFGSSVGRFKIDLYMSEGPGDCGTWQTSICDKPERGCKDTTGDYNVVIPESTTSGTYRIRVGLQGDDSVFACSDTFDVL 997
A +TG+L + + + AL V++P+ TV + P+ V W G RF+IDLHYCGSYSFCF+ D CGF++ +LC EG++ C ++D +V +PEP GYRVRI + G + RCS++F+L+ S DA D G ++ V AP+S ++A+AG YTVE++YDNGFG+ GRFKIDLY +EG GDCG W +S+CDKP+ GC DT GDY++VIP + G Y+IRVGL GDDSVFACS +F+V+
Sbjct: 9 AALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVGTETFRCSDEFYLMSSADASDQ-DGPTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVV 252
BLAST of mRNA_D-dichotoma_M_contig929.20035.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 237 bits (604), Expect = 1.820e-70 Identity = 120/233 (51.50%), Postives = 159/233 (68.24%), Query Frame = 2
Query: 326 ALSVVSPSEGMTVAAGTPFEVEWVGVGEQARFDIDLHYCGSYSFCFDDNCGFFLASLCPEGEEGCGDEDGGYEVVMPEPP--TPGDGYRVRISQ-RGMDRVRCSEDFFLLGS----DAGDLGSGASITVSAPTSQSVALAGDQYTVEWEYDNGFGSSVGRFKIDLYMSEGPGDCGTWQTSICDKPERGCKDTTGDYNVVIPESTTSGTYRIRVGLQGDDSVFACSDTFDVLAA 1003
AL VV+P+EG V A + VEW G G R++IDL+YCGS C +D CG ++ +LCP GE+GC D +G Y++VMPEP T G GY+VR++ D CS++F+L+ AGD G G +TV++P+S A AG++YTVE++YDNG GSSVGRF IDLY + G GDCGT+ ++CDKP GCKD+ GDY+V IPE +G Y IRVG DDSV+ CSD F++L A
Sbjct: 7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGS--MCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAG-GPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGA 236
BLAST of mRNA_D-dichotoma_M_contig929.20035.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 228 bits (582), Expect = 1.900e-67 Identity = 121/249 (48.59%), Postives = 164/249 (65.86%), Query Frame = 2
Query: 287 ALITGVLMTSSSLALSVVSPSEGMTVAAGTPFEVEWVGVGEQARFDIDLHYCGSYSFCFDDNCGFFLASLCPEGEEGCGDEDGGYEVVMPEPP--TPGDGYRVRISQ-RGMDRVRCSEDFFLLG-------SDAGDLGSGASITVSAPTSQSVALAGDQYTVEWEYDNGFGSSVGRFKIDLYMSEGPGDCGTWQTSICDKPERGCKDTTGDYNVVIPESTTSGTYRIRVGLQGDDSVFACSDTFDVLAA 1003
AL G+L +S AL VV+P+ G V + + VEW G G RF+IDL+YC S C +D CG ++ +LCP GE+GC D +G Y++VMPEP T G GY+VR++ D CS++F+L+ SDAG G +TV++P++ A AG++YTVE++YDNG GSSVGRF IDLY + G GDCGT+ ++CDKP GCKD+ GDY+V IPE +G Y IRVG D+SV+ CSD F++L A
Sbjct: 9 ALACGMLGVAS--ALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNS--MCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAG----GPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGA 249
BLAST of mRNA_D-dichotoma_M_contig929.20035.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 225 bits (573), Expect = 3.340e-66 Identity = 118/236 (50.00%), Postives = 156/236 (66.10%), Query Frame = 2
Query: 326 ALSVVSPSEGMTVAAGTPFEVEWVGVGEQARFDIDLHYCGSYSFCFDDNCGFFLASLCPEGEEGCGDEDGGYEVVMPEPPT-PGDGYRVRISQRGMDR-VRCSEDFFLLGS----DAGDLGSGASITVSAPTSQSVALAGDQYTVEWEYDNGFGSSVGRFKIDLYMSEGPGDCGTWQTSICDKPERGCKDTTGDYNVVIPESTTSGTYRIRVGLQGDDSVFACSDTFDVLAAWSFA 1015
AL VVSP+ G V A + + VEW G R+DIDL+YCGS C +D CG ++ +LCP G++GC D G Y+VVMPEP GY+V ++ + CS DF L+ S DA D+G A ++V++P+ A+AG +YTVE++YDNG GSSV RF IDLY S G GDCGT+ T+ICDKP GCKD+ GDY+VVIP T SG Y IRVG+ DD V+ CSD+F+++ S +
Sbjct: 19 ALEVVSPAAGDMVVADSAYTVEWTGA-TSGRYDIDLYYCGSV--CMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMG--AYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGESMS 249
BLAST of mRNA_D-dichotoma_M_contig929.20035.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 224 bits (570), Expect = 1.050e-65 Identity = 115/230 (50.00%), Postives = 156/230 (67.83%), Query Frame = 2
Query: 326 ALSVVSPSEGMTVAAGTPFEVEWVGVGEQARFDIDLHYCGSYSFCFDDNCGFFLASLCPEGEEGCGDEDGGYEVVMPEPPT--PGDGYRVRISQ-RGMDRVRCSEDFFLLGS-DAGDLGS--GASITVSAPTSQSVALAGDQYTVEWEYDNGFGSSVGRFKIDLYMSEGPGDCGTWQTSICDKPERGCKDTTGDYNVVIPESTTSGTYRIRVGLQGDDSVFACSDTFDVL 997
AL VV+PS + V A + VEW G + RF+IDL++CGS C +D+CG ++ +LCP GEEGC D +G Y++VMPEP + GY+VR+ D + CS+ F+L+ S DA D GS G +TV++P A AG++YTVE++YDNG GS V RF IDLYM++G GDCGT+ TSICDKP GCKD+ GDY+V IP T +G Y+IRVG D+ ++ CS TF ++
Sbjct: 19 ALEVVTPSADLIVVADRTYTVEWTGA-DSGRFEIDLYHCGS--MCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIM 245
BLAST of mRNA_D-dichotoma_M_contig929.20035.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 221 bits (563), Expect = 1.600e-64 Identity = 113/229 (49.34%), Postives = 155/229 (67.69%), Query Frame = 2
Query: 326 ALSVVSPSEGMTVAAGTPFEVEWVGVGEQARFDIDLHYCGSYSFCFDDNCGFFLASLCPEGEEGCGDEDGGYEVVMPEPP--TPGDGYRVRISQ-RGMDRVRCSEDFFLLGS-DAGDLGS--GASITVSAPTSQSVALAGDQYTVEWEYDNGFGSSVGRFKIDLYMSEGPGDCGTWQTSICDKPERGCKDTTGDYNVVIPESTTSGTYRIRVGLQGDDSVFACSDTFDV 994
AL V +PS+G+TV A + VEW G RF+IDL+YCGS C +D+CG ++ +LCP GE+GC D +G Y++VMPEP T G GY+VR+ + CS++F+LL S +A +G G ++ V++P S +A +YTVE++YDNG GSSV RF IDLY ++G GDCGT+ SICDKP GCKD+ GDY+V IP T +G Y+IRV DDS+++CS TF +
Sbjct: 19 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245
BLAST of mRNA_D-dichotoma_M_contig929.20035.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 217 bits (553), Expect = 3.150e-63 Identity = 112/233 (48.07%), Postives = 156/233 (66.95%), Query Frame = 2
Query: 308 MTSSSLALSVVSPSEGMTVAAGTPFEVEWVGVGEQARFDIDLHYCGSYSFCFDDNCGFFLASLCPEGEEGCGDEDGGYEVVMPEPPT-PGDGYRVRISQRGMDR-VRCSEDFFLLGS-DAGDLGS-GASITVSAPTSQSVALAGDQYTVEWEYDNGFGSSVGRFKIDLYMSEGPGDCGTWQTSICDKPERGCKDTTGDYNVVIPESTTSGTYRIRVGLQGDDSVFACSDTFDV 994
M S++ AL VVSP G++V A + VEW G RF+IDL+YC S FC DD CG ++ +LCP G +GC D G Y+++MPEP + GY+V + + + CS+DF L+ S DA + G G S+TV++P+ A+AG+ YTVEW+Y+NGFGSS RF +DLY+ G GDCGT+ T++CD+P GC D+ GDY+V IP T +G Y IRVG+ D+ ++ CSDTF+V
Sbjct: 13 MLSAANALEVVSPDGGISVLADRAYTVEWTGT-TTGRFEIDLYYCNS--FCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242
BLAST of mRNA_D-dichotoma_M_contig929.20035.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 209 bits (532), Expect = 3.850e-60 Identity = 109/229 (47.60%), Postives = 150/229 (65.50%), Query Frame = 2
Query: 326 ALSVVSPSEGMTVAAGTPFEVEWVGVGEQARFDIDLHYCGSYSFCFDDNCGFFLASLCPEGEEGCGDEDGGYEVVMPEPPT-PGDGYRVRISQRGMDR-VRCSEDFFLLGS-DAGDLGS-GASITVSAPTSQSVALAGDQYTVEWEYDNGFGSSVGRFKIDLYM-SEGPGDCGTWQTSICDKPERGCKDTTGDYNVVIPESTTSGTYRIRVGLQGDDSVFACSDTFDVL 997
AL VVSP+ G++V A + VEW G + +RF+IDL+YCGS FC +D CG ++ +LCP G +GC D G Y++VMPEP GY+V ++ + + CS DF L+ S DA G G S+TV++P+ A+AG YTVEW+Y+NG GSS RF IDLY G GDCGT+ ++CDKP GC D+ GDY+V IP T +G Y +RVG+ DD +F CS+ F+++
Sbjct: 19 ALEVVSPAAGISVIADRTYTVEWTGTSD-SRFEIDLYYCGS--FCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTSSGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig929.20035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig929.20035.1 >prot_D-dichotoma_M_contig929.20035.1 ID=prot_D-dichotoma_M_contig929.20035.1|Name=mRNA_D-dichotoma_M_contig929.20035.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=253bp MASTSRIVFALITGVLMTSSSLALSVVSPSEGMTVAAGTPFEVEWVGVGEback to top mRNA from alignment at D-dichotoma_M_contig929:198732..201911- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig929.20035.1 ID=mRNA_D-dichotoma_M_contig929.20035.1|Name=mRNA_D-dichotoma_M_contig929.20035.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=3180bp|location=Sequence derived from alignment at D-dichotoma_M_contig929:198732..201911- (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig929:198732..201911- >mRNA_D-dichotoma_M_contig929.20035.1 ID=mRNA_D-dichotoma_M_contig929.20035.1|Name=mRNA_D-dichotoma_M_contig929.20035.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1518bp|location=Sequence derived from alignment at D-dichotoma_M_contig929:198732..201911- (Dictyota dichotoma ODC1387m male)back to top |