mRNA_D-dichotoma_M_contig926.19992.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig926.19992.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 210 bits (535), Expect = 3.750e-68 Identity = 111/122 (90.98%), Postives = 118/122 (96.72%), Query Frame = 2
Query: 50 MSGKGKGGRGDKKSQSRSSKAGLQFPVGRIGRFLKAGKYSSRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVIK 415
MSGKGKGGRG KKS +RS+KAGLQFPVGR+GRFLK GKY+SR+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK +K
Sbjct: 1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 121
BLAST of mRNA_D-dichotoma_M_contig926.19992.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 211 bits (537), Expect = 1.090e-67 Identity = 112/127 (88.19%), Postives = 122/127 (96.06%), Query Frame = 2
Query: 38 SKSSMSGKGKGGRGDKKSQSRSSKAGLQFPVGRIGRFLKAGKYSSRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVIKS 418
S ++MSGKGKGGRG KKS +RS+KAGLQFPVGR+GRFLK GKY+SR+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK +K+
Sbjct: 42 STTTMSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKN 167
BLAST of mRNA_D-dichotoma_M_contig926.19992.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 204 bits (520), Expect = 1.110e-65 Identity = 109/119 (91.60%), Postives = 115/119 (96.64%), Query Frame = 2
Query: 50 MSGKGKGGRGDKKSQSRSSKAGLQFPVGRIGRFLKAGKYSSRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 406
MSGKGKGGRG KKS S+SSKAGLQFPV RIGR+LK GKY++R+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_D-dichotoma_M_contig926.19992.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 204 bits (520), Expect = 5.650e-65 Identity = 109/119 (91.60%), Postives = 115/119 (96.64%), Query Frame = 2
Query: 50 MSGKGKGGRGDKKSQSRSSKAGLQFPVGRIGRFLKAGKYSSRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 406
MSGKGKGGRG KKS S+SSKAGLQFPV RIGR+LK GKY++R+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 52 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
BLAST of mRNA_D-dichotoma_M_contig926.19992.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 201 bits (512), Expect = 1.090e-64 Identity = 107/119 (89.92%), Postives = 113/119 (94.96%), Query Frame = 2
Query: 50 MSGKGKGGRGDKKSQSRSSKAGLQFPVGRIGRFLKAGKYSSRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 406
MSGKGKGGRG KK SRS+KAGLQFPVGRIGRF+K GKYSSR+G GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG-KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_D-dichotoma_M_contig926.19992.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA) HSP 1 Score: 198 bits (503), Expect = 5.060e-63 Identity = 99/117 (84.62%), Postives = 113/117 (96.58%), Query Frame = 2
Query: 56 GKGKGGRGDKKSQSRSSKAGLQFPVGRIGRFLKAGKYSSRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 406
GKGKGGRGDKK+ S+S+KAGLQFPVGR+GRFLK G+Y+ R+GAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RI+PRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK
Sbjct: 5 GKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKK 121
BLAST of mRNA_D-dichotoma_M_contig926.19992.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA) HSP 1 Score: 197 bits (500), Expect = 8.080e-63 Identity = 101/119 (84.87%), Postives = 113/119 (94.96%), Query Frame = 2
Query: 50 MSGKGKGGRGDKKSQSRSSKAGLQFPVGRIGRFLKAGKYSSRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 406
MSGKGKGGRG+KKS + S+KAGLQFPVGRIGR+L+ GKY++R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK
Sbjct: 1 MSGKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119
BLAST of mRNA_D-dichotoma_M_contig926.19992.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 196 bits (499), Expect = 1.150e-62 Identity = 103/122 (84.43%), Postives = 113/122 (92.62%), Query Frame = 2
Query: 50 MSGKGKGGRGDKKSQSRSSKAGLQFPVGRIGRFLKAGKYSSRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVIK 415
MSGKGKGGRG KKS + S+KAGLQFPVGRIGR+L+ GKY++R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK K
Sbjct: 1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_D-dichotoma_M_contig926.19992.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA) HSP 1 Score: 196 bits (498), Expect = 2.040e-62 Identity = 104/121 (85.95%), Postives = 112/121 (92.56%), Query Frame = 2
Query: 50 MSGKGKGGRGD--KKSQSRSSKAGLQFPVGRIGRFLKAGKYSSRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 406
M+GKGKGGRG KKS S+SSKAGLQFPV R+GRFLK G+Y+ R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct: 1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKK 121
BLAST of mRNA_D-dichotoma_M_contig926.19992.1 vs. uniprot
Match: K0T493_THAOC (Histone H2A n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T493_THAOC) HSP 1 Score: 201 bits (510), Expect = 2.290e-62 Identity = 105/135 (77.78%), Postives = 121/135 (89.63%), Query Frame = 2
Query: 2 RLSLRQAVP*HISKSSMSGKGKGGRGDKKSQSRSSKAGLQFPVGRIGRFLKAGKYSSRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 406
RL+++ S ++MSGKGKGGRG+KKS + S+KAGLQFPVGRIGR+L+ GKY++R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKKARI+PRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct: 36 RLTIKIVFATQHSTTTMSGKGKGGRGEKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKARIIPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKK 170 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig926.19992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig926.19992.1 >prot_D-dichotoma_M_contig926.19992.1 ID=prot_D-dichotoma_M_contig926.19992.1|Name=mRNA_D-dichotoma_M_contig926.19992.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=124bp MSGKGKGGRGDKKSQSRSSKAGLQFPVGRIGRFLKAGKYSSRIGAGAPVYback to top mRNA from alignment at D-dichotoma_M_contig926:141696..142116+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig926.19992.1 ID=mRNA_D-dichotoma_M_contig926.19992.1|Name=mRNA_D-dichotoma_M_contig926.19992.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=421bp|location=Sequence derived from alignment at D-dichotoma_M_contig926:141696..142116+ (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig926:141696..142116+ >mRNA_D-dichotoma_M_contig926.19992.1 ID=mRNA_D-dichotoma_M_contig926.19992.1|Name=mRNA_D-dichotoma_M_contig926.19992.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=744bp|location=Sequence derived from alignment at D-dichotoma_M_contig926:141696..142116+ (Dictyota dichotoma ODC1387m male)back to top |