mRNA_D-dichotoma_M_contig924.19979.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig924.19979.1
Unique NamemRNA_D-dichotoma_M_contig924.19979.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig924.19979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig924contigD-dichotoma_M_contig924:174867..175401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.7132733-CDS-D-dichotoma_M_contig924:174866..1749751622931157.7132733-CDS-D-dichotoma_M_contig924:174866..174975Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig924 174867..174975 -
1690799641.090542-CDS-D-dichotoma_M_contig924:174866..1749751690799641.090542-CDS-D-dichotoma_M_contig924:174866..174975Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig924 174867..174975 -
1622931157.7438097-CDS-D-dichotoma_M_contig924:175315..1754011622931157.7438097-CDS-D-dichotoma_M_contig924:175315..175401Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig924 175316..175401 -
1690799641.099927-CDS-D-dichotoma_M_contig924:175315..1754011690799641.099927-CDS-D-dichotoma_M_contig924:175315..175401Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig924 175316..175401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig924.19979.1prot_D-dichotoma_M_contig924.19979.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig924 174867..175401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig924.19979.1

>prot_D-dichotoma_M_contig924.19979.1 ID=prot_D-dichotoma_M_contig924.19979.1|Name=mRNA_D-dichotoma_M_contig924.19979.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=65bp
FTQQERPWRQAGLAAPRNVDEVPVEFQDRILESIRMSGSGTPCGGGCLRL
RRALRHPPIWVVVE*
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mRNA from alignment at D-dichotoma_M_contig924:174867..175401-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig924.19979.1 ID=mRNA_D-dichotoma_M_contig924.19979.1|Name=mRNA_D-dichotoma_M_contig924.19979.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=535bp|location=Sequence derived from alignment at D-dichotoma_M_contig924:174867..175401- (Dictyota dichotoma ODC1387m male)
TTTACGCAGCAGGAGCGGCCGTGGCGTCAAGCAGGACTCGCGGCGCCTCG
AAACGTGGATGAAGTGCCCGTCGAGTTCCAAGACAGGTATGTCACAGCTG
AGCTGCATCTTGTTGGTGAACGCTCGCGGGGAGCCCTTGCGCTTCGGGCT
GTTTTGGATTCAGGCGCCCATTTTACGAGTTTATCGCTGCCGATCGTTGA
AGTGTTGGAGCGAATTTTCCCAGGTGTGCCGTTGCGCGTCCCATTTTCGC
TTGGGGCGCGGCAGGCTGTCACGGCTTCGGGGCAGCGCGTTACCGTTACG
GAGCGTACTATCCCGTTACAGTTATCGCTAGTGACTCCGTGGGGACCGGC
ACCGTTGCCTCCGATCTCGTTCGCGATTATGCCGGGGTCGGATGGCGTTC
TTCTCCTGGGATTACCAACTCTCCAGGATCTTGGAGTCGATCCGTATGAG
CGGATCTGGGACTCCATGCGGAGGCGGATGTCTCCGCCTGAGGAGGGCGT
TGAGACACCCGCCTATCTGGGTAGTCGTCGAGTGA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig924:174867..175401-

>mRNA_D-dichotoma_M_contig924.19979.1 ID=mRNA_D-dichotoma_M_contig924.19979.1|Name=mRNA_D-dichotoma_M_contig924.19979.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=390bp|location=Sequence derived from alignment at D-dichotoma_M_contig924:174867..175401- (Dictyota dichotoma ODC1387m male)
TTTACGCAGCAGGAGCGGCCGTGGCGTCAAGCAGGACTCGCGGCGCCTCG
AAACGTGGATGAAGTGCCCGTCGAGTTCCAAGACAGTTTACGCAGCAGGA
GCGGCCGTGGCGTCAAGCAGGACTCGCGGCGCCTCGAAACGTGGATGAAG
TGCCCGTCGAGTTCCAAGACAGGATCTTGGAGTCGATCCGTATGAGCGGA
TCTGGGACTCCATGCGGAGGCGGATGTCTCCGCCTGAGGAGGGCGTTGAG
ACACCCGCCTATCTGGGTAGTCGTCGAGTGAGATCTTGGAGTCGATCCGT
ATGAGCGGATCTGGGACTCCATGCGGAGGCGGATGTCTCCGCCTGAGGAG
GGCGTTGAGACACCCGCCTATCTGGGTAGTCGTCGAGTGA
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