mRNA_D-dichotoma_M_contig922.19965.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig922.19965.1
Unique NamemRNA_D-dichotoma_M_contig922.19965.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
[Close]
BLAST of mRNA_D-dichotoma_M_contig922.19965.1 vs. uniprot
Match: A0A6H5KQK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK6_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.000e-55
Identity = 93/115 (80.87%), Postives = 104/115 (90.43%), Query Frame = 1 
Query:    1 GLFMEGARWDVERHAIDESRPRELFATMPYLHLLPKLKTDIIEVMGSSELYTGQIHGTLHSYMCPVYKTSIRQGTLTTTGHSTNFVMFMTVPMAEEHDQKHWIKRGVAMLTQLDD 345
            GLF+EGARW+V RHAIDESRPRELF +MPY+ LLP++KTDI EV G  ELYTGQ  GT HSYMCPVYKTS+RQGTL+TTGHSTNFVMF+T+P+AEEH QKHWIKRGVAMLTQLDD
Sbjct: 1511 GLFIEGARWNVARHAIDESRPRELFVSMPYMQLLPRMKTDIPEVEGCPELYTGQPGGTSHSYMCPVYKTSVRQGTLSTTGHSTNFVMFITLPLAEEHTQKHWIKRGVAMLTQLDD 1625
[Close]
BLAST of mRNA_D-dichotoma_M_contig922.19965.1 vs. uniprot
Match: D7G4S2_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4S2_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.060e-55
Identity = 93/115 (80.87%), Postives = 104/115 (90.43%), Query Frame = 1 
Query:    1 GLFMEGARWDVERHAIDESRPRELFATMPYLHLLPKLKTDIIEVMGSSELYTGQIHGTLHSYMCPVYKTSIRQGTLTTTGHSTNFVMFMTVPMAEEHDQKHWIKRGVAMLTQLDD 345
            GLF+EGARW+V RHAIDESRPRELF +MPY+ LLP++KTDI EV G  ELYTGQ  GT HSYMCPVYKTS+RQGTL+TTGHSTNFVMF+T+P+AEEH QKHWIKRGVAMLTQLDD
Sbjct: 4028 GLFIEGARWNVARHAIDESRPRELFVSMPYMQLLPRMKTDIPEVEGCPELYTGQPGGTSHSYMCPVYKTSVRQGTLSTTGHSTNFVMFITLPLAEEHTQKHWIKRGVAMLTQLDD 4142
[Close]
BLAST of mRNA_D-dichotoma_M_contig922.19965.1 vs. uniprot
Match: A0A482RV20_9ARCH (Dynein_C domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RV20_9ARCH)

HSP 1 Score: 167 bits (423), Expect = 1.090e-49
Identity = 75/114 (65.79%), Postives = 92/114 (80.70%), Query Frame = 1 
Query:    1 GLFMEGARWDVERHAIDESRPRELFATMPYLHLLPKLKTDIIEVMGSSELYTGQIHGTLHSYMCPVYKTSIRQGTLTTTGHSTNFVMFMTVPMAEEHDQKHWIKRGVAMLTQLD 342
            GLF+EGARWD+  H++ ES  REL+  MP +HL PK++T++  V+G  E YTG + GT   YMCPVYKTS RQGTL+TTGHSTNFVMF+ +PM++EH QKHWIKRGVAMLTQLD
Sbjct:   19 GLFLEGARWDISSHSLAESHARELYVQMPTIHLYPKMRTEVPLVLGVPEQYTGSVQGTALVYMCPVYKTSFRQGTLSTTGHSTNFVMFIRLPMSQEHLQKHWIKRGVAMLTQLD 132
[Close]
BLAST of mRNA_D-dichotoma_M_contig922.19965.1 vs. uniprot
Match: A0A7S3HU48_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HU48_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.020e-47
Identity = 81/114 (71.05%), Postives = 93/114 (81.58%), Query Frame = 1 
Query:    1 GLFMEGARWDVERHAIDESRPRELFATMPYLHLLPKLKTDIIEVMGSSELYTGQIHGTLHSYMCPVYKTSIRQGTLTTTGHSTNFVMFMTVPMAEEHDQKHWIKRGVAMLTQLD 342
            GLF+EGARWD + H I ES PRELF  MP++HL PK++ D+  V G  E YTG ++GT H YMCPVYKTS RQGTL+TTGHSTNFVMF+ VPMA+EH QKHWIKRGVAMLTQLD
Sbjct:  918 GLFLEGARWDFDHHFITESLPRELFIAMPFIHLEPKMRADVPVVEGVPEQYTGSVNGTAHVYMCPVYKTSFRQGTLSTTGHSTNFVMFIRVPMAKEHKQKHWIKRGVAMLTQLD 1031
[Close]
BLAST of mRNA_D-dichotoma_M_contig922.19965.1 vs. uniprot
Match: A0A7S3HTS3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTS3_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.200e-47
Identity = 81/114 (71.05%), Postives = 93/114 (81.58%), Query Frame = 1 
Query:    1 GLFMEGARWDVERHAIDESRPRELFATMPYLHLLPKLKTDIIEVMGSSELYTGQIHGTLHSYMCPVYKTSIRQGTLTTTGHSTNFVMFMTVPMAEEHDQKHWIKRGVAMLTQLD 342
            GLF+EGARWD + H I ES PRELF  MP++HL PK++ D+  V G  E YTG ++GT H YMCPVYKTS RQGTL+TTGHSTNFVMF+ VPMA+EH QKHWIKRGVAMLTQLD
Sbjct: 3879 GLFLEGARWDFDHHFITESLPRELFIAMPFIHLEPKMRADVPVVEGVPEQYTGSVNGTAHVYMCPVYKTSFRQGTLSTTGHSTNFVMFIRVPMAKEHKQKHWIKRGVAMLTQLD 3992
[Close]
BLAST of mRNA_D-dichotoma_M_contig922.19965.1 vs. uniprot
Match: A0A7S4E4T5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E4T5_9STRA)

HSP 1 Score: 172 bits (437), Expect = 6.690e-46
Identity = 80/115 (69.57%), Postives = 91/115 (79.13%), Query Frame = 1 
Query:    1 GLFMEGARWDVERHAIDESRPRELFATMPYLHLLPKLKTDIIEVMGSSELYTGQIHGTLHSYMCPVYKTSIRQGTLTTTGHSTNFVMFMTVPMAEEHDQKHWIKRGVAMLTQLDD 345
            GLF EGARWDVE+H I ESRPREL+ T P  H+ PK+K DI EV+G  ELYTG I GT H Y  PVY+ S R G L+TTGHSTNFVMF+ VPMA+EH Q+HWIKRGVAML+QLDD
Sbjct: 4215 GLFFEGARWDVEKHVIAESRPRELYTTCPMFHMQPKVKGDIEEVIGRPELYTGAIRGTAHKYQVPVYRESARAGVLSTTGHSTNFVMFIRVPMAKEHTQQHWIKRGVAMLSQLDD 4329
[Close]
BLAST of mRNA_D-dichotoma_M_contig922.19965.1 vs. uniprot
Match: A0A7S4DA33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DA33_HETAK)

HSP 1 Score: 172 bits (436), Expect = 8.670e-46
Identity = 79/115 (68.70%), Postives = 91/115 (79.13%), Query Frame = 1 
Query:    1 GLFMEGARWDVERHAIDESRPRELFATMPYLHLLPKLKTDIIEVMGSSELYTGQIHGTLHSYMCPVYKTSIRQGTLTTTGHSTNFVMFMTVPMAEEHDQKHWIKRGVAMLTQLDD 345
            GLF+EGA W  E H + ESRPREL+  MPY+HLLPK   DI  V G  E YTG++ G  H YMCPVYKTS+RQGTL+TTGHSTNFVM++ +P+A EH QKHWIKRGVAMLTQLDD
Sbjct: 1738 GLFLEGAGWSAEAHVVAESRPRELYVKMPYIHLLPKQLKDIEAVEGVPEHYTGRLDGRAHVYMCPVYKTSLRQGTLSTTGHSTNFVMYIRLPIAAEHQQKHWIKRGVAMLTQLDD 1852
[Close]
BLAST of mRNA_D-dichotoma_M_contig922.19965.1 vs. uniprot
Match: A0A7S2P1M5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P1M5_9STRA)

HSP 1 Score: 172 bits (436), Expect = 9.100e-46
Identity = 77/115 (66.96%), Postives = 94/115 (81.74%), Query Frame = 1 
Query:    1 GLFMEGARWDVERHAIDESRPRELFATMPYLHLLPKLKTDIIEVMGSSELYTGQIHGTLHSYMCPVYKTSIRQGTLTTTGHSTNFVMFMTVPMAEEHDQKHWIKRGVAMLTQLDD 345
            GL+++GARWD  +H++ ES+PRELFAT P +HLLPKLK  I +V G  +LYTG + GT H Y CPVYKTS R GTL+TTGHSTNF+MF+ +PM  +HDQKHWIKRGVA+LTQLDD
Sbjct: 4072 GLYLDGARWDNTKHSLAESKPRELFATCPCIHLLPKLKDGIKKVKGKPQLYTGYLEGTSHVYQCPVYKTSSRWGTLSTTGHSTNFIMFINLPMDPQHDQKHWIKRGVALLTQLDD 4186
[Close]
BLAST of mRNA_D-dichotoma_M_contig922.19965.1 vs. uniprot
Match: A0A7S2XV04_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV04_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.600e-45
Identity = 74/114 (64.91%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:    1 GLFMEGARWDVERHAIDESRPRELFATMPYLHLLPKLKTDIIEVMGSSELYTGQIHGTLHSYMCPVYKTSIRQGTLTTTGHSTNFVMFMTVPMAEEHDQKHWIKRGVAMLTQLD 342
            GL++EGA W+     + ESRPREL+  MP++HL PK+ +DI EV G  ELY+G + G  H YMCPVYKTS+RQG L+TTGHSTNFVMF+ +PM++ HDQKHWIKRGVAMLTQLD
Sbjct:  220 GLYLEGAGWEPVEMVLAESRPRELYVAMPFIHLHPKVLSDIEEVDGVPELYSGSLTGKAHVYMCPVYKTSLRQGELSTTGHSTNFVMFIRLPMSKSHDQKHWIKRGVAMLTQLD 333
[Close]
BLAST of mRNA_D-dichotoma_M_contig922.19965.1 vs. uniprot
Match: A0A836CH21_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH21_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.080e-44
Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:    1 GLFMEGARWDVERHAIDESRPRELFATMPYLHLLPKLKTDIIEVMGSSELYTGQIHGTLHSYMCPVYKTSIRQGTLTTTGHSTNFVMFMTVPMAEEHDQKHWIKRGVAMLTQLD 342
            GL+MEGARW   RHAI ES PRELF  +P LHLLP+ K D+  V GS  LYTG++ GT H+Y CPVYKTS+RQGTL+TTGHSTNFVMF+ +PMA    QKHWIKRGVAMLTQLD
Sbjct: 4089 GLYMEGARWSRTRHAIAESAPRELFTAVPLLHLLPRHKRDMAAVGGSPALYTGRVGGTNHAYECPVYKTSVRQGTLSTTGHSTNFVMFINLPMAPADTQKHWIKRGVAMLTQLD 4202
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig922.19965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQK6_9PHAE1.000e-5580.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4S2_ECTSI1.060e-5580.87Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A482RV20_9ARCH1.090e-4965.79Dynein_C domain-containing protein n=1 Tax=archaeo... [more]
A0A7S3HU48_9STRA1.020e-4771.05Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3HTS3_9STRA1.200e-4771.05Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S4E4T5_9STRA6.690e-4669.57Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4DA33_HETAK8.670e-4668.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2P1M5_9STRA9.100e-4666.96Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2XV04_9STRA1.600e-4564.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CH21_9STRA1.080e-4470.18Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig922contigD-dichotoma_M_contig922:214962..215618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.1
Seed ortholog evalue9.1e-48
Seed eggNOG ortholog2880.D7G4S2
KEGG koko:K10408
KEGG Pathwayko05016,map05016
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size657
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig922.19965.1prot_D-dichotoma_M_contig922.19965.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig922 214971..215309 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931155.6291387-UTR-D-dichotoma_M_contig922:214961..2149701622931155.6291387-UTR-D-dichotoma_M_contig922:214961..214970Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig922 214962..214970 +
1690799640.0969157-UTR-D-dichotoma_M_contig922:214961..2149701690799640.0969157-UTR-D-dichotoma_M_contig922:214961..214970Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig922 214962..214970 +
1622931155.6656375-UTR-D-dichotoma_M_contig922:215309..2156181622931155.6656375-UTR-D-dichotoma_M_contig922:215309..215618Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig922 215310..215618 +
1690799640.123599-UTR-D-dichotoma_M_contig922:215309..2156181690799640.123599-UTR-D-dichotoma_M_contig922:215309..215618Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig922 215310..215618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931155.6453936-CDS-D-dichotoma_M_contig922:214970..2153091622931155.6453936-CDS-D-dichotoma_M_contig922:214970..215309Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig922 214971..215309 +
1690799640.1100075-CDS-D-dichotoma_M_contig922:214970..2153091690799640.1100075-CDS-D-dichotoma_M_contig922:214970..215309Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig922 214971..215309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig922.19965.1

>prot_D-dichotoma_M_contig922.19965.1 ID=prot_D-dichotoma_M_contig922.19965.1|Name=mRNA_D-dichotoma_M_contig922.19965.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=113bp
MEGARWDVERHAIDESRPRELFATMPYLHLLPKLKTDIIEVMGSSELYTG
QIHGTLHSYMCPVYKTSIRQGTLTTTGHSTNFVMFMTVPMAEEHDQKHWI
KRGVAMLTQLDD*
back to top

mRNA from alignment at D-dichotoma_M_contig922:214962..215618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig922.19965.1 ID=mRNA_D-dichotoma_M_contig922.19965.1|Name=mRNA_D-dichotoma_M_contig922.19965.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=657bp|location=Sequence derived from alignment at D-dichotoma_M_contig922:214962..215618+ (Dictyota dichotoma ODC1387m male)
GGACTTTTCATGGAGGGCGCGAGATGGGATGTCGAACGTCACGCCATTGA
TGAATCTCGACCACGTGAATTGTTTGCAACCATGCCCTACCTTCATCTTC
TTCCAAAACTGAAGACCGATATAATCGAAGTGATGGGGAGTTCCGAGCTC
TATACAGGTCAAATACACGGAACTCTGCATTCATACATGTGCCCAGTGTA
TAAGACCTCCATAAGGCAGGGGACGCTGACCACTACGGGTCACTCAACCA
ATTTTGTGATGTTCATGACGGTGCCTATGGCTGAAGAACATGACCAAAAG
CACTGGATCAAGCGGGGAGTTGCAATGCTGACACAGCTAGATGACTAAAG
AATTGCGTCCAACGAATGGATGGAAGATGTCTCTAATAGGTGTTGCAGCT
CTTGCCTGAGGATAACTGCCAGAATGTGTGTTTGTAAGAGTCGCCTTGGA
AGACAAAGGCTGTGAGCCTGGATCGTATTGTCACATGATCCCTAATTCCT
CAACAACATTCGCTCGACGTTCAGATCTCGTGCTCATAGAAAGCAGAAAA
ACAATTGAAACACTACATTGAGAAATATGCCTTGAAACGTCTCCGACCGA
GGAAGCGATCCTTTGTTGTGCTCTTCGGCGCATTTTGAGATGGACTTGGG
ACAGGCG
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig922:214962..215618+

>mRNA_D-dichotoma_M_contig922.19965.1 ID=mRNA_D-dichotoma_M_contig922.19965.1|Name=mRNA_D-dichotoma_M_contig922.19965.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=678bp|location=Sequence derived from alignment at D-dichotoma_M_contig922:214962..215618+ (Dictyota dichotoma ODC1387m male)
ATGGAGGGCGCGAGATGGGATGTCGAACGTCACGCCATTGATGAATCTCG
ACCACGTGAATTGTTTGCAACCATGCCCTACCTTCATCTTCTTCCAAAAC
TGAAGACCGATATAATCGAAGTGATGGGGAGTTCCGAGCTCTATACAGGT
CAAATACACGGAACTCTGCATTCATACATGTGCCCAGTGTATAAGACCTC
CATAAGGCAGGGGACGCTGACCACTACGGGTCACTCAACCAATTTTGTGA
TGTTCATGACGGTGCCTATGGCTGAAGAACATGACCAAAAGCACTGGATC
AAGCGGGGAGTTGCAATGCTGACACAGCTAGATGACTAAATGGAGGGCGC
GAGATGGGATGTCGAACGTCACGCCATTGATGAATCTCGACCACGTGAAT
TGTTTGCAACCATGCCCTACCTTCATCTTCTTCCAAAACTGAAGACCGAT
ATAATCGAAGTGATGGGGAGTTCCGAGCTCTATACAGGTCAAATACACGG
AACTCTGCATTCATACATGTGCCCAGTGTATAAGACCTCCATAAGGCAGG
GGACGCTGACCACTACGGGTCACTCAACCAATTTTGTGATGTTCATGACG
GTGCCTATGGCTGAAGAACATGACCAAAAGCACTGGATCAAGCGGGGAGT
TGCAATGCTGACACAGCTAGATGACTAA
back to top