mRNA_D-dichotoma_M_contig921.19953.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig921.19953.1
Unique NamemRNA_D-dichotoma_M_contig921.19953.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig921.19953.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 3.070e-29
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 1
Query:    1 VVQQDGASPHTGENNIEILHSARMGRGWMVELVTQPAQSPDLNVNDLGFFASLKSRIWGMNASSIDELV 207
            VVQQDGASPHTG+ N EIL+SA + RGW+VELVTQPAQSPDLN+NDLG FASLK R+WG+NA SIDELV
Sbjct:  296 VVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_D-dichotoma_M_contig921.19953.1 vs. uniprot
Match: A0A7S3GU94_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU94_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.530e-17
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    4 VQQDGASPHTGENNIEILHSARMGRGWMVELVTQPAQSPDLNVNDLGFFASLKSRIWGMN--ASSIDELVGTIFDQYEKYDRDTLERVWHSVFKVYSQTLR 300
            +Q DGA PHT     + +H+     GW + +V Q AQSPDLNV DLG F SLK ++  +   A +IDEL+  +   Y++Y RDTL+++W      +++ +R
Sbjct:   17 IQHDGARPHTAGGLEDEVHATASTEGWHITMVRQRAQSPDLNVMDLGLFHSLKVQVIQLKDGAHNIDELIQKVRVVYQQYSRDTLDQIWGHQVACWTEIMR 117          
BLAST of mRNA_D-dichotoma_M_contig921.19953.1 vs. uniprot
Match: A0A0N7L738_PLAHL (Predicted methyltransferase n=4 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L738_PLAHL)

HSP 1 Score: 80.5 bits (197), Expect = 1.510e-15
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 1
Query:    1 VVQQDGASPHTGENNIEILHSARMGRGWMVELVTQPAQSPDLNVNDLGFFASLKSRIWGMNASSIDELVGTIFDQYEKYDRDTLERVWHSVFKVYSQTL 297
            V+QQD A PH   ++ E+ HSA    GW ++L  QPA SPD N NDLGFFASL+S    M A +I++LV  + D + K     L++V+ ++  V  +T+
Sbjct:  607 VLQQDNAKPHVTVDDPEV-HSACSAGGWDMKLTAQPANSPDFNANDLGFFASLQSLQHKMKAKTIEDLVNNVDDAFAKLHYTALDKVFLTLQSVLQETM 704          
BLAST of mRNA_D-dichotoma_M_contig921.19953.1 vs. uniprot
Match: A0A6A5ABP8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ABP8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.850e-14
Identity = 37/99 (37.37%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    4 VQQDGASPHTGENNIEILHSARMGRGWMVELVTQPAQSPDLNVNDLGFFASLKSRIWGMNASSIDELVGTIFDQYEKYDRDTLERVWHSVFKVYSQTLR 300
            +QQD A PH   +++E+  +  +G GW V+LV QPA SPD NV DLGFF S+++       + ID+LV  +   +++ D  TL++ + ++ KV  ++L+
Sbjct:  112 IQQDNARPHVQVDDLEVATAGTIG-GWRVQLVAQPAMSPDFNVLDLGFFNSIQALQHRQVVTCIDDLVAAVHAAFDELDFRTLDKTFMTLQKVMEESLK 209          
BLAST of mRNA_D-dichotoma_M_contig921.19953.1 vs. uniprot
Match: A0A7S2FC44_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FC44_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.690e-14
Identity = 42/100 (42.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:    4 VQQDGASPHTGENNIEILHSARMGRGWMVELVTQPAQSPDLNVNDLGFFASLKSRIWGM-NASSIDELVGTIFDQYEKYDRDTLERVWHSVFKVYSQTLR 300
            +QQDGA PHT       L       G+ +++ TQPAQSPDLNVNDLGFF SLK     +  A S++E++  I   YE+   D L+R++ S+   Y   L+
Sbjct:   34 IQQDGAKPHTAAETW--LKGQGKKEGFDLKVTTQPAQSPDLNVNDLGFFRSLKCAATNVAEAFSVEEMIKYIRQAYEEMPADKLDRMFMSLINNYRLLLK 131          
BLAST of mRNA_D-dichotoma_M_contig921.19953.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.100e-13
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    4 VQQDGASPHTGENNIEILHSARMGRGWMVELVTQPAQSPDLNVNDLGFFASLKSRIWGMNASSIDELVGTIFDQYEKYDRDTLERVWHSVFKVYSQTLR 300
            VQQD A PH   ++ E+L + R   GW ++L+ QPAQSPD NV DLGFF +++S      A +ID+L+  + D +E      L++ + ++ KV  + +R
Sbjct:  292 VQQDNAKPHVAVDDPEVLAAGRK-EGWNIQLMAQPAQSPDFNVLDLGFFNAIQSLQHQTTARTIDDLIKCVEDAFENLAWRVLDKTFMTLQKVMEEAMR 389          
BLAST of mRNA_D-dichotoma_M_contig921.19953.1 vs. uniprot
Match: A0A024TAT1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TAT1_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.270e-13
Identity = 36/96 (37.50%), Postives = 60/96 (62.50%), Query Frame = 1
Query:    4 VQQDGASPHTGENNIEILHSARMGRGWMVELVTQPAQSPDLNVNDLGFFASLKSRIWGMNASSIDELVGTIFDQYEKYDRDTLERVWHSVFKVYSQ 291
            VQQD A  H   +++ ++ S   G GW + ++ QPAQSPD+NV DLGFF S+++    +  SSI++LV T+   +E     TL++ + ++ +V S+
Sbjct:  158 VQQDNAKSHVAPDDVSVVSSCMSG-GWDIRVLNQPAQSPDMNVLDLGFFNSIQALQQRIECSSIEDLVCTVEQSFEDLAPSTLDKTFGTLLRVCSK 252          
BLAST of mRNA_D-dichotoma_M_contig921.19953.1 vs. uniprot
Match: UPI0007EF40B3 (uncharacterized protein LOC108194535 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF40B3)

HSP 1 Score: 74.7 bits (182), Expect = 1.500e-13
Identity = 37/100 (37.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:    1 VVQQDGASPHTGENNIEILHSARMGRGWMVELVTQPAQSPDLNVNDLGFFASLKSRIWGMNASSIDELVGTIFDQYEKYDRDTLERVWHSVFKVYSQTLR 300
            V+QQD A PH    +++ +  A+   G+ + L  QPA SPDLN+NDLGFF  ++        +++ ELVG + + YE+    TL  VW S+    ++ LR
Sbjct:  309 VIQQDNARPHICNTDLDFIEVAKSD-GFNITLANQPANSPDLNINDLGFFRVIQGLQHEKAPTTVCELVGAVLEAYEEVSDSTLNHVWLSLMGCMTEILR 407          
BLAST of mRNA_D-dichotoma_M_contig921.19953.1 vs. uniprot
Match: UPI00053F7236 (uncharacterized protein LOC104908485 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7236)

HSP 1 Score: 73.2 bits (178), Expect = 2.170e-13
Identity = 36/99 (36.36%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    4 VQQDGASPHTGENNIEILHSARMGRGWMVELVTQPAQSPDLNVNDLGFFASLKSRIWGMNASSIDELVGTIFDQYEKYDRDTLERVWHSVFKVYSQTLR 300
            +QQD A  H  + N E   +A    G+ ++L+ QPAQSPDLNV DLGFF ++++ ++     +IDEL+  + D Y+K+D + ++  W  +  V  + L+
Sbjct:  128 IQQDNARAHI-QGNDEAFKAAATQNGFNIKLIQQPAQSPDLNVLDLGFFRAIQALMYQTFPKNIDELIENVQDAYDKFDPNVVKYTWLKLHWVMVEILK 225          
BLAST of mRNA_D-dichotoma_M_contig921.19953.1 vs. uniprot
Match: A0A6A4Z9D8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9D8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.600e-13
Identity = 35/93 (37.63%), Postives = 58/93 (62.37%), Query Frame = 1
Query:    4 VQQDGASPHTGENNIEILHSARMGRGWMVELVTQPAQSPDLNVNDLGFFASLKSRIWGMNASSIDELVGTIFDQYEKYDRDTLERVWHSVFKV 282
            +QQD A PH   N+  ++ + R G GW + L +QPAQSPDLNV DLG+F +++S    M   ++D+LV  +   +E+ +   L++ + ++ KV
Sbjct:  167 IQQDNAKPHVSVNDPAVVAAGRQG-GWTISLCSQPAQSPDLNVLDLGYFNAIQSLQHQMATYTLDDLVVAVVKSFEELECTVLDKTFMTLQKV 258          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig921.19953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE3.070e-2979.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3GU94_9STRA2.530e-1739.60Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0N7L738_PLAHL1.510e-1542.42Predicted methyltransferase n=4 Tax=Plasmopara hal... [more]
A0A6A5ABP8_9STRA3.850e-1437.37Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7S2FC44_9STRA8.690e-1442.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6A5AA16_9STRA1.100e-1338.38Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024TAT1_9STRA1.270e-1337.50Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
UPI0007EF40B31.500e-1337.00uncharacterized protein LOC108194535 n=1 Tax=Daucu... [more]
UPI00053F72362.170e-1336.36uncharacterized protein LOC104908485 n=1 Tax=Beta ... [more]
A0A6A4Z9D8_9STRA5.600e-1337.63Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig921contigD-dichotoma_M_contig921:208426..208725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score72.0
Seed ortholog evalue1.8e-10
Seed eggNOG ortholog161934.XP_010666796.1
EggNOG OGs2CMKC@1,2QQNW@2759,37YIB@33090,3GP0P@35493
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.34776-CDS-D-dichotoma_M_contig921:208425..2087251622931154.34776-CDS-D-dichotoma_M_contig921:208425..208725Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig921 208426..208725 -
1690799639.623545-CDS-D-dichotoma_M_contig921:208425..2087251690799639.623545-CDS-D-dichotoma_M_contig921:208425..208725Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig921 208426..208725 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig921.19953.1prot_D-dichotoma_M_contig921.19953.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig921 208426..208725 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig921.19953.1

>prot_D-dichotoma_M_contig921.19953.1 ID=prot_D-dichotoma_M_contig921.19953.1|Name=mRNA_D-dichotoma_M_contig921.19953.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=100bp
VVQQDGASPHTGENNIEILHSARMGRGWMVELVTQPAQSPDLNVNDLGFF
ASLKSRIWGMNASSIDELVGTIFDQYEKYDRDTLERVWHSVFKVYSQTLR
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mRNA from alignment at D-dichotoma_M_contig921:208426..208725-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig921.19953.1 ID=mRNA_D-dichotoma_M_contig921.19953.1|Name=mRNA_D-dichotoma_M_contig921.19953.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=300bp|location=Sequence derived from alignment at D-dichotoma_M_contig921:208426..208725- (Dictyota dichotoma ODC1387m male)
GTAGTGCAGCAGGACGGCGCGAGCCCCCACACGGGAGAAAATAATATAGA GATTCTTCATTCAGCGAGGATGGGGCGGGGTTGGATGGTAGAGCTTGTCA CGCAGCCTGCCCAGTCGCCTGACTTGAACGTCAACGACTTGGGCTTCTTC GCATCTCTAAAGTCAAGGATATGGGGGATGAACGCCAGTTCGATAGACGA GTTAGTGGGGACTATCTTCGACCAGTACGAGAAGTACGATAGGGACACGT TGGAACGGGTTTGGCACAGCGTCTTTAAGGTTTACAGCCAGACACTACGT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig921:208426..208725-

>mRNA_D-dichotoma_M_contig921.19953.1 ID=mRNA_D-dichotoma_M_contig921.19953.1|Name=mRNA_D-dichotoma_M_contig921.19953.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=600bp|location=Sequence derived from alignment at D-dichotoma_M_contig921:208426..208725- (Dictyota dichotoma ODC1387m male)
GTAGTGCAGCAGGACGGCGCGAGCCCCCACACGGGAGAAAATAATATAGA
GATTCTTCATTCAGCGAGGATGGGGCGGGGTTGGATGGTAGAGCTTGTCA
CGCAGCCTGCCCAGTCGCCTGACTTGAACGTCAACGACTTGGGCTTCTTC
GCATCTCTAAAGTCAAGGATATGGGGGATGAACGCCAGTTCGATAGACGA
GTTAGTGGGGACTATCTTCGACCAGTACGAGAAGTACGATAGGGACACGT
TGGAACGGGTTTGGCACAGCGTCTTTAAGGTTTACAGCCAGACACTACGT
GTAGTGCAGCAGGACGGCGCGAGCCCCCACACGGGAGAAAATAATATAGA
GATTCTTCATTCAGCGAGGATGGGGCGGGGTTGGATGGTAGAGCTTGTCA
CGCAGCCTGCCCAGTCGCCTGACTTGAACGTCAACGACTTGGGCTTCTTC
GCATCTCTAAAGTCAAGGATATGGGGGATGAACGCCAGTTCGATAGACGA
GTTAGTGGGGACTATCTTCGACCAGTACGAGAAGTACGATAGGGACACGT
TGGAACGGGTTTGGCACAGCGTCTTTAAGGTTTACAGCCAGACACTACGT
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