mRNA_D-dichotoma_M_contig921.19949.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig921.19949.1
Unique NamemRNA_D-dichotoma_M_contig921.19949.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig921.19949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig921contigD-dichotoma_M_contig921:32461..35458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size929
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig921.19949.1prot_D-dichotoma_M_contig921.19949.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig921 32748..35368 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.3731117-UTR-D-dichotoma_M_contig921:32460..327471622931153.3731117-UTR-D-dichotoma_M_contig921:32460..32747Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig921 32461..32747 -
1690799639.1011827-UTR-D-dichotoma_M_contig921:32460..327471690799639.1011827-UTR-D-dichotoma_M_contig921:32460..32747Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig921 32461..32747 -
1622931153.446153-UTR-D-dichotoma_M_contig921:35368..354581622931153.446153-UTR-D-dichotoma_M_contig921:35368..35458Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig921 35369..35458 -
1690799639.1415815-UTR-D-dichotoma_M_contig921:35368..354581690799639.1415815-UTR-D-dichotoma_M_contig921:35368..35458Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig921 35369..35458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.393151-CDS-D-dichotoma_M_contig921:32747..329101622931153.393151-CDS-D-dichotoma_M_contig921:32747..32910Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig921 32748..32910 -
1690799639.1110833-CDS-D-dichotoma_M_contig921:32747..329101690799639.1110833-CDS-D-dichotoma_M_contig921:32747..32910Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig921 32748..32910 -
1622931153.410773-CDS-D-dichotoma_M_contig921:34008..342871622931153.410773-CDS-D-dichotoma_M_contig921:34008..34287Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig921 34009..34287 -
1690799639.1235495-CDS-D-dichotoma_M_contig921:34008..342871690799639.1235495-CDS-D-dichotoma_M_contig921:34008..34287Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig921 34009..34287 -
1622931153.4251666-CDS-D-dichotoma_M_contig921:35258..353681622931153.4251666-CDS-D-dichotoma_M_contig921:35258..35368Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig921 35259..35368 -
1690799639.132674-CDS-D-dichotoma_M_contig921:35258..353681690799639.132674-CDS-D-dichotoma_M_contig921:35258..35368Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig921 35259..35368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig921.19949.1

>prot_D-dichotoma_M_contig921.19949.1 ID=prot_D-dichotoma_M_contig921.19949.1|Name=mRNA_D-dichotoma_M_contig921.19949.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=184bp
MLHRERSSSSSSSSSSSSSPGRKREERRAQWGAEGSRRSGELLKSSERSL
LARDRHSSVRLVRSSSSVRVGSVKKSSTRRSRIRLGSASKSQSARQEGNG
LSPVRRETCPGIVEGGAGQGRACSGTRSDDFIGRRDEGGLKSSLNQLEHG
NIEERFDLFKMHTNKPLASLAASSRRSLGSHER*
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mRNA from alignment at D-dichotoma_M_contig921:32461..35458-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig921.19949.1 ID=mRNA_D-dichotoma_M_contig921.19949.1|Name=mRNA_D-dichotoma_M_contig921.19949.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2998bp|location=Sequence derived from alignment at D-dichotoma_M_contig921:32461..35458- (Dictyota dichotoma ODC1387m male)
CGCACACCGAACGACGGAAACGTTTCCTCGAATTCAACAAATAGTGAAGC
TTCCTCCGGTGGAGATCGATCTGCTTCAGACGCGGCCTCCATGCTCCATC
GCGAGCGATCATCGTCTTCGTCTTCGTCGTCATCATCGTCTTCGTCTCCG
GGAAGAAAGCGTGAGGAGCGCAGGGCCCAGTGGGGCGCTGAAGGGTCCAG
GTGAGCTGAGGAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGACTACTCGGGAGGCAACATCTCAGCGAAGGT
TGCCAACATGAAGGGTAGAAGTCTGCGCGACATGCAAGTTTTAACCTAAG
TGCCTTACTTGTGTGGTACGACTGCGGCTATAGTGAGTGTGGCAGGTACA
GTCGTCTGGGCGAAAGTTCCGAATGACGCAAACCCTCGCTCGCTAGGAGC
TCTCAAGAATCCATTGCCTTCGATCAAGTACAGTGACTGGTAGTAGTGGC
AATCTGCGCCCAAGTGAAGCTAATGGTCCTTTTGGCTTTGTAAGAGACTT
GAACTCGCCCGCGCTCACTCCGCGTGTGGGGCCCTGATAAGCAGTTTGGA
AAACTACGGCTGGTATGCTTGGCATATGGGCTAGACCTAGCGGGAAAATG
TATAAAGCAAGAACCGCCATTCAATCATCATGCTCGAGGCCCAAAGTGAT
AGATGGCCTTGAAGACAAGCGCGGAACGGTTTCCACAGGGGCTCAAAAAT
CGAATGATAAACGATTGGTCACCTCTCCTCAAGGAAAACATCTCCTTCCC
CGACACCATCGCTTCTTTGCTGCGTACGTCTTGAGATTCCGTATGAGTCT
TCGACGATATGGTCGTGCGTTCATCCGGGTGTACTTCTATCCGTGCAAGC
CGTGTTGCCCTTGCACCTTTCTTGGTCAGGTACCTTCCTTGCCTAGAATT
CTCCGACCAATAATTCTTCGGCCAATGAATCCTGTTACGTGTTATTCGTT
CTTGATACTGCACAGCTTGCAGCGAAAAGATCAATACCCCACCCCGGAAC
TGTCTAACGTGAACATCACAGGAGATCAGGGGAGCTGTTGAAGTCATCCG
AAAGGTCACTTCTTGCTCGAGATCGCCACTCAAGTGTCCGTCTCGTTCGT
TCGTCATCTTCAGTCCGAGTAGGCTCGGTGAAGAAGTCTTCCACACGTCG
AAGTCGAATACGGCTGGGATCTGCTTCAAAATCGCAATCAGCGAGGCAAG
AAGGCAACGGGTTGAGCCCGGTGCGTCGGGAGACCTGCCCAGGTATCGTT
GAGGGGGGCGCCGGTCAAGGTCGGGCATGCAGCGGGACAAGAAGCGATGA
GTCGCCTGCAGCGTTGACAAGGAAATGGTTTCGAGTCGATGTTTCATAGG
TGATCAAGGTTCGGCTGACAAAGAAGGTATGACTCTGAGTTTATCGGCAT
CTTTGGCCAGAGGCTCAAGAAAAAATACCGTTGTATCACCTTCTAGCTTG
TCGACTTCACCCCCATTCGCTTGCTAATACGTTGAGCATCCCATACTCAG
TTGTGTAGAAACACAGCCGTGGAGTCGCCTCCAGATATATGAGAGGGACA
AACATCGGCAGGTGGAGGGCTCCTGCGCACTTCTGGTAGCTGCTGTTTCA
TACTGTAGGCTAGAGTACACTGAAGCCGTGAGAGAAATACAATATATTTG
GCCGGTACACCCCCTCTCCTCCTCCTCTTCGATCAAATGTCAGGGTACTT
GTGAATTAAGCTACGCCTGGTTACCTTTGCGCTGCAAAGATTCCACAATG
TCTCGTCAGTTTCTCCCAGTGCATATCAGTGCATGTCAGTGTATCCCGAC
GGAAGTGTAGTGTAGTCACTTAGTCACTTAGTCATGGGTGATCTGCGTTC
AAACAGAAATGAGGCATGGTATCGACACAAGACGCGCCATTCCTTCACAG
AGAACAGTACTTTCCTATTCGTGGGATCCTGATGGTCCTCGATGAGGCTG
ATGGTCCTCGATGAGGCTGATGGTCCTTGATGAGGCTGATGGTTCTCGAT
GAGGCTGATGGTCCTCGATGGTCCTCGATGAGGCTGATGGTCCTTGATGA
CGCTGATGGTCCTGATGGTCCTCGATGAGGCTGATGGTCCTCGATGAGGC
TGATGGTCCTCGATGAGGCTGATGGTCCTCGATGAGGCTGATGGTCCTTG
ATGAGGCTGATGGTTCTCGATGAGGCTGATGGTTCTCGATTAGGCTGATG
GTCCTCGATGAGGCTGAGACTGGGGAACTACAGGAAGCTGGGGATAAAGG
GAAAAGGCTCGGGGTGTCCCATGACCACACCCTAGCCTCTTTCGAATTGA
TCGTATGCAGACGGACTCAGTGTTGGCATGGTTCAGCAGTCTCATCTTGT
TCATGTCACTGCTCTGCCTGATGCATCGTCGCGTCTTACCCCAGGAAGCT
TCATCGGCAGGAGGGACGAGGGTGGACTGAAATCGTCCTTGAATCAGCTG
GAACACGGCAACATTGAGGAAAGGTTCGATCTGTTCAAGATGCACACTAA
CAAACCACTGGCGTCACTGGCAGCGAGCAGCCGGAGGAGCCTGGGGAGCC
ACGAGAGATAGTGGACGCCGTGTACACACACGTGATTGATGCTGGATCTG
AGAGATCCGTTCGCCCGCCGCCGATGTTGATGCAGTAGGACATTCCTGAT
CGTCAGGCGCTCGACTTGACTCCTCTTCTTGGTTGGGATTCAGTAACGAA
CACCCCGCGTCTGGACGCTGGGACAAAGGGCACATCCACAGCACACCAAG
TAGATAGGTTTAGCCCTGCAAACCTCCTCGAGGAGGAGTAAGAGCAATCT
CGTGGAAAAGAGAAGTCAACCTCCATGGGTGGAGATAAGAAGGTGGAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig921:32461..35458-

>mRNA_D-dichotoma_M_contig921.19949.1 ID=mRNA_D-dichotoma_M_contig921.19949.1|Name=mRNA_D-dichotoma_M_contig921.19949.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1104bp|location=Sequence derived from alignment at D-dichotoma_M_contig921:32461..35458- (Dictyota dichotoma ODC1387m male)
ATGCTCCATCGCGAGCGATCATCGTCTTCGTCTTCGTCGTCATCATCGTC
TTCGTCTCCGGGAAGAAAGCGTGAGGAGCGCAGGGCCCAGTGGGGCGCTG
AAGGGTCCAGATGCTCCATCGCGAGCGATCATCGTCTTCGTCTTCGTCGT
CATCATCGTCTTCGTCTCCGGGAAGAAAGCGTGAGGAGCGCAGGGCCCAG
TGGGGCGCTGAAGGGTCCAGGAGATCAGGGGAGCTGTTGAAGTCATCCGA
AAGGTCACTTCTTGCTCGAGATCGCCACTCAAGTGTCCGTCTCGTTCGTT
CGTCATCTTCAGTCCGAGTAGGCTCGGTGAAGAAGTCTTCCACACGTCGA
AGTCGAATACGGCTGGGATCTGCTTCAAAATCGCAATCAGCGAGGCAAGA
AGGCAACGGGTTGAGCCCGGTGCGTCGGGAGACCTGCCCAGGTATCGTTG
AGGGGGGCGCCGGTCAAGGTCGGGCATGCAGCGGGACAAGAAGCGATGAG
AGATCAGGGGAGCTGTTGAAGTCATCCGAAAGGTCACTTCTTGCTCGAGA
TCGCCACTCAAGTGTCCGTCTCGTTCGTTCGTCATCTTCAGTCCGAGTAG
GCTCGGTGAAGAAGTCTTCCACACGTCGAAGTCGAATACGGCTGGGATCT
GCTTCAAAATCGCAATCAGCGAGGCAAGAAGGCAACGGGTTGAGCCCGGT
GCGTCGGGAGACCTGCCCAGGTATCGTTGAGGGGGGCGCCGGTCAAGGTC
GGGCATGCAGCGGGACAAGAAGCGATGACTTCATCGGCAGGAGGGACGAG
GGTGGACTGAAATCGTCCTTGAATCAGCTGGAACACGGCAACATTGAGGA
AAGGTTCGATCTGTTCAAGATGCACACTAACAAACCACTGGCGTCACTGG
CAGCGAGCAGCCGGAGGAGCCTGGGGAGCCACGAGAGATAGCTTCATCGG
CAGGAGGGACGAGGGTGGACTGAAATCGTCCTTGAATCAGCTGGAACACG
GCAACATTGAGGAAAGGTTCGATCTGTTCAAGATGCACACTAACAAACCA
CTGGCGTCACTGGCAGCGAGCAGCCGGAGGAGCCTGGGGAGCCACGAGAG
ATAG
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