mRNA_D-dichotoma_M_contig921.19948.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig921.19948.1
Unique NamemRNA_D-dichotoma_M_contig921.19948.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig921.19948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig921contigD-dichotoma_M_contig921:22838..23279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size241
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.3060396-CDS-D-dichotoma_M_contig921:22837..229791622931153.3060396-CDS-D-dichotoma_M_contig921:22837..22979Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig921 22838..22979 -
1690799639.0810633-CDS-D-dichotoma_M_contig921:22837..229791690799639.0810633-CDS-D-dichotoma_M_contig921:22837..22979Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig921 22838..22979 -
1622931153.3226664-CDS-D-dichotoma_M_contig921:23181..232791622931153.3226664-CDS-D-dichotoma_M_contig921:23181..23279Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig921 23182..23279 -
1690799639.0911057-CDS-D-dichotoma_M_contig921:23181..232791690799639.0911057-CDS-D-dichotoma_M_contig921:23181..23279Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig921 23182..23279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig921.19948.1prot_D-dichotoma_M_contig921.19948.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig921 22838..23279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig921.19948.1

>prot_D-dichotoma_M_contig921.19948.1 ID=prot_D-dichotoma_M_contig921.19948.1|Name=mRNA_D-dichotoma_M_contig921.19948.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=80bp
PCLLVSLGTYLLLFPTGKSATEWVPRATAGHRRIKGKALVGSGWSDTVGA
CRLTPPPCIRVTAAEPMVCPQGENLPTSA*
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mRNA from alignment at D-dichotoma_M_contig921:22838..23279-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig921.19948.1 ID=mRNA_D-dichotoma_M_contig921.19948.1|Name=mRNA_D-dichotoma_M_contig921.19948.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=442bp|location=Sequence derived from alignment at D-dichotoma_M_contig921:22838..23279- (Dictyota dichotoma ODC1387m male)
CCTTGTCTACTGGTCTCCTTAGGGACATACCTGCTGTTGTTTCCCACAGG
CAAGTCAGCTACGGAATGGGTTCCTAGGGCTACAGCGGGTCACCGACGGT
AAGATCATGCATGTCGGCCGATAAACACCTTGTGTTGTGAGAGCAGGGTC
TTTTTTTTATATTCAGGAGATAATATACGTCCCTCTCTGGAAAGGGATGG
TTGCCACGAGCGATTCCACATCCTGTCACGTGCCAAGCACTATCTGATTC
CGACGAATGACGATAGCATTCGCAACATGGTTGCTTATATTTTCATACAG
GATCAAGGGCAAAGCATTGGTCGGGAGTGGGTGGAGCGATACGGTTGGTG
CCTGCAGGTTGACTCCTCCACCGTGCATAAGGGTCACAGCAGCCGAACCC
ATGGTGTGTCCTCAAGGTGAAAACCTACCAACTTCTGCATGA
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig921:22838..23279-

>mRNA_D-dichotoma_M_contig921.19948.1 ID=mRNA_D-dichotoma_M_contig921.19948.1|Name=mRNA_D-dichotoma_M_contig921.19948.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=480bp|location=Sequence derived from alignment at D-dichotoma_M_contig921:22838..23279- (Dictyota dichotoma ODC1387m male)
CCTTGTCTACTGGTCTCCTTAGGGACATACCTGCTGTTGTTTCCCACAGG
CAAGTCAGCTACGGAATGGGTTCCTAGGGCTACAGCGGGTCACCGACGCC
TTGTCTACTGGTCTCCTTAGGGACATACCTGCTGTTGTTTCCCACAGGCA
AGTCAGCTACGGAATGGGTTCCTAGGGCTACAGCGGGTCACCGACGGATC
AAGGGCAAAGCATTGGTCGGGAGTGGGTGGAGCGATACGGTTGGTGCCTG
CAGGTTGACTCCTCCACCGTGCATAAGGGTCACAGCAGCCGAACCCATGG
TGTGTCCTCAAGGTGAAAACCTACCAACTTCTGCATGAGATCAAGGGCAA
AGCATTGGTCGGGAGTGGGTGGAGCGATACGGTTGGTGCCTGCAGGTTGA
CTCCTCCACCGTGCATAAGGGTCACAGCAGCCGAACCCATGGTGTGTCCT
CAAGGTGAAAACCTACCAACTTCTGCATGA
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