mRNA_D-dichotoma_M_contig92.19941.1 (mRNA) Dictyota dichotoma ODC1387m male
|
Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig92.19941.1 vs. uniprot
Match: D8LRI3_ECTSI (200 kDa antigen p200 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI3_ECTSI) HSP 1 Score: 291 bits (745), Expect = 5.920e-82 Identity = 236/478 (49.37%), Postives = 303/478 (63.39%), Query Frame = 1
Query: 1 RQLVILTRDREDIVSRHEGEIEKLEHEMQDGKNLLAAAEARASEADAALXXXXXXXXXXXXXXXXXXXXXXXXEAKSAAEVRAEQAMSLQKVADAEARYQNEMRDLERQHEEAFCGVKRLHLEELEDVRRRSADSRTLETLARQVHASAGALKVLQAEVMERKGAAEVSRESQVEARERLIKELEGSARRAQQTAEDEVQRLQGTLMAMDQVMRGIRGQNAGERERLRQEHLRMEALQNSMIAEVEAMRQGVEDERRRLSERNSMLTRELREREAAARAETDRLAQERFNLETERETFTALQVSASQAAAQEAQEEERLKVNTTRSLAQXXXXXKLARQKLEKETSSLETRQAMATSDFLKAEEARADLGRARGDQEREARRLRSMAAELEQALEEVRMRDSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXLQVCMAQVEETARRQDMERTGIAQARAQSATELSESRRLKSQLARTI 1434
RQLV+L ++E + ++ + ++L+ + ++ AAA+ARA E++AALXXXXXXXXXXXXXXXXXXXXXXXX ++SA ++RAEQ L+K++DAEAR Q ++ RRR++DS+TLETLA QV ASAGA+K+L++E++ERK +EVSRE ++ARERLIKELE SARRAQQTAEDEVQRLQGTLMAMDQVM +RGQNAGERERLRQEHLRMEALQ +M+AEVE++R+ VE+ER+RL+ R LET+RE+F ALQ+SAS+AA + A R A LARQ LEKE SS E R + A +D KA+ R L R R E E RRL+++A ELE+A EEVR + E+ Q+ + EE ARR + ER+ IAQARAQSATELS SRRLK++L+R
Sbjct: 1043 RQLVLLASEKEAVATKVARDEQRLQRDADLARDATAAAQARAFESEAALXXXXXXXXXXXXXXXXXXXXXXXXXSRSARDLRAEQESCLKKISDAEARRQEDLCKXXXXXXXXXXXXXXXXXXXXXXTRRRNSDSKTLETLAEQVQASAGAVKLLRSEMIERKNVSEVSREGHMDARERLIKELEQSARRAQQTAEDEVQRLQGTLMAMDQVMSALRGQNAGERERLRQEHLRMEALQGAMVAEVESVRKSVEEERQRLA---------------------------RVKLETDRESFAALQISASKAAEEMA-----------RQHADEEGRLNLARQSLEKEASSFEARLSCARADLHKADHVRETLDRLRDQDEVERRRLKAVARELERAFEEVRAKTDESIERQREAEAMKMGALAASKTAAEEREAAQLRYIRTEEAARRLEAERSSIAQARAQSATELSTSRRLKAELSRAF 1482
BLAST of mRNA_D-dichotoma_M_contig92.19941.1 vs. uniprot
Match: A0A6H5KKS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS5_9PHAE) HSP 1 Score: 214 bits (544), Expect = 1.470e-55 Identity = 199/440 (45.23%), Postives = 266/440 (60.45%), Query Frame = 1
Query: 1 RQLVILTRDREDIVSRHEGEIEKLEHEMQDGKNLLAAAEARASEADAALXXXXXXXXXXXXXXXXXXXXXXXXEAKSAAEVRAEQAMSLQKVADAEARYQ-----------NEMRDLERQHEEAFCGVKRLHLEELEDVRRRSADSRTLETLARQV-----------------HASAGALKVLQAEVMERKGAAEVSRESQVEARERLIKELEGSARRAQQTAEDEVQRLQGTLMAMDQVMRGIRGQNAGERERLRQEHLRMEALQNSMIAEVEAMRQGVEDERRRLSERNSMLTRELREREAAARAETDRLAQERFNLETERETFTALQVSASQAAAQEAQEEERLKVNTTRSLAQXXXXXKLARQKLEKETSSLETRQAMATSDFLKAEEARADLGRARGDQER--------EARRLRSMAAELEQALEEVRMRDSEA 1212
RQL +L ++E + ++ + ++ + + ++ AAA+ RA E++AALXXXXXXXXXXXXXXXXXXXXXXXX ++SA+++RAEQ L+K++DAEAR+Q ++R ER+ EEA +KRLH EELED RRR++ S+TLETLA QV ASAGA+K+LQ+E++ERK +EVSRE ++ARERLIKELE SARRAQQTAEDEVQRLQGTLMAMDQ +M+AEV+++R+ VE+ER+RL+ER + L R+ RE +A ARAE+DRLA++ +A + A + A EE RL LARQ LEKE SS E R + A +D KA+ R L R R E E RRL+++A ELE+A EEVR + E+
Sbjct: 1043 RQLALLASEKEAVAAKVARDEQRFQRDADLARDATAAAQTRAFESEAALXXXXXXXXXXXXXXXXXXXXXXXXXSRSASDLRAEQESCLKKISDAEARHQASAGSAGAAAAEDLRKAERRQEEALSELKRLHREELEDTRRRNSASKTLETLAEQVSFTPLLSCNVSGVCDKVQASAGAVKLLQSEMIERKNVSEVSREGHMDARERLIKELEQSARRAQQTAEDEVQRLQGTLMAMDQ---------------------------GAMVAEVDSVRKSVEEERQRLAERGAALERDKREADATARAESDRLAEQ----------------AAEEMARRHADEEGRLN---------------LARQSLEKEASSFEARLSCARADLHKADHVRKTLDRLRDQDEVGGWVGRWVERRRLKAVAGELERAFEEVRAKTDES 1424
BLAST of mRNA_D-dichotoma_M_contig92.19941.1 vs. uniprot
Match: A0A835YM98_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM98_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 1.110e-16 Identity = 55/99 (55.56%), Postives = 75/99 (75.76%), Query Frame = 1
Query: 334 EAFCGVKRLHLEELEDVRRRSADSRTLETLARQVHASAGALKVLQAEVMERKGAAEVSRESQVEARERLIKELEGSARRAQQTAEDEVQRLQGTLMAMD 630
EA +KR+H +E++ V+RR+ D+R LE LA+Q+ +SAGAL LQ +V+E++ A+V+R Q+EARERL+ ELEGSARR+Q AE EV RL G L AMD
Sbjct: 691 EAIAALKRVHADEMDAVKRRAGDARALEGLAQQIQSSAGALTQLQGQVLEQRRGADVARTGQLEARERLVGELEGSARRSQLAAEQEVTRLHGVLAAMD 789
BLAST of mRNA_D-dichotoma_M_contig92.19941.1 vs. uniprot
Match: A0A067BXX0_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BXX0_SAPPC) HSP 1 Score: 72.8 bits (177), Expect = 1.360e-9 Identity = 80/270 (29.63%), Postives = 131/270 (48.52%), Query Frame = 1
Query: 220 EAKSAAEVRAEQAMSLQKVADAEARYQN-------EMRDLERQ---HEEAFCGVKRLHLEELE---------DVRRRSADSRTLETLARQVHASAGALKVLQAEVMERKGAAEVSRESQVEARERLIKELEGSARRAQQTAEDEVQRLQGTLMAMDQVMRGIRGQNAGERERLRQEHLRMEALQNSMIAEVEAMRQGVEDERRRLSERNSMLTRELREREAAARAETDRLAQERFNLETERETFTALQVSA--SQAAAQEAQEEERLKVN 966
+A SAA+++A+ A LQ + +A Q+ RDL + H ++ KRL + + D R A+ +E L QV A+ LKVLQ V+ K A+V + E+R RL+ E+EGS + ++E QRLQ L A++ MR +RG++ E+ERLR E R+E L ++ +++ + + +S+ + +++R EA ++L +E +L R F A Q A Q QE + E +VN
Sbjct: 720 QASSAADLQAQIAQLLQDKSILQAELQSVSSKLVQAQRDLSSEQALHAQSVERFKRLEHDRAQEALQQQRWRDEESRHAEKEAVERLLTQVRAAVSNLKVLQEHVVFGKSEADVRSMGENESRSRLLLEMEGSCKAYMSRTQEECQRLQSLLSALETTMRSLRGEHMEEKERLRSEQARLEELALHFKSQTTLLQERTDTNTKVVSQTLASYIQDIRIAEARMHKRREQLQEEERSLHMARAAFAAQQEEALRDQRIVQERHQAEAQRVN 989
BLAST of mRNA_D-dichotoma_M_contig92.19941.1 vs. uniprot
Match: A0A067BDW4_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BDW4_SAPPC) HSP 1 Score: 72.4 bits (176), Expect = 1.470e-9 Identity = 63/198 (31.82%), Postives = 101/198 (51.01%), Query Frame = 1
Query: 379 DVRRRSADSRTLETLARQVHASAGALKVLQAEVMERKGAAEVSRESQVEARERLIKELEGSARRAQQTAEDEVQRLQGTLMAMDQVMRGIRGQNAGERERLRQEHLRMEALQNSMIAEVEAMRQGVEDERRRLSERNSMLTRELREREAAARAETDRLAQERFNLETERETFTALQVSA--SQAAAQEAQEEERLKVN 966
D R A+ +E L QV A+ LKVLQ V+ K A+V + E+R RL+ E+EGS + ++E QRLQ L A++ MR +RG++ E+ERLR E R+E L ++ +++ + + +S+ + +++R EA ++L +E +L R F A Q A Q QE + E +VN
Sbjct: 572 DEESRHAEKEAVERLLTQVRAAVSNLKVLQEHVVFGKSEADVRSMGENESRSRLLLEMEGSCKAYMSRTQEECQRLQSLLSALETTMRSLRGEHMEEKERLRSEQARLEELALHFKSQTTLLQERTDTNTKVVSQTLASYIQDIRIAEARMHKRREQLQEEERSLHMARAAFAAQQEEALRDQRIVQERHQAEAQRVN 769
BLAST of mRNA_D-dichotoma_M_contig92.19941.1 vs. uniprot
Match: T0PQ39_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PQ39_SAPDV) HSP 1 Score: 70.1 bits (170), Expect = 9.420e-9 Identity = 73/251 (29.08%), Postives = 121/251 (48.21%), Query Frame = 1
Query: 220 EAKSAAEVRAEQAMSLQKVADAEARYQN-------EMRDLERQ---HEEAFCGVKRLHLEELE---------DVRRRSADSRTLETLARQVHASAGALKVLQAEVMERKGAAEVSRESQVEARERLIKELEGSARRAQQTAEDEVQRLQGTLMAMDQVMRGIRGQNAGERERLRQEHLRMEALQNSMIAEVEAMRQGVEDERRRLSERNSMLTRELREREAAARAETDRLAQERFNLETERETFTALQVSA 915
+A S A+++A+ A LQ + +A QN RDL + H ++ KRL + + D R A+ +E L QV A+ LKVLQ V+ K A+V + E+R RL+ E+EGS + ++E QRLQ L A++ MR +RG++ E+ERLR E R+E L ++ +++ + + +S+ + +++R EA ++ +E +L R F A Q A
Sbjct: 743 QASSTADLQAQIAQLLQDKSILQAELQNVSSKLVLAQRDLSSEQALHAQSVERFKRLEHDRAQEALQQQRWRDEENRHAEKEAVERLLTQVRAAVSNLKVLQENVVFGKSEADVRSMGENESRSRLLLEMEGSCKAYMSRTQEECQRLQSLLSALETTMRSLRGEHMEEKERLRSEQARLEELALHFKSQTTLLQERTDTNTKVVSQTLASYIQDIRIAEARMHKRREQHQEEERSLHMARAAFAAQQEEA 993 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig92.19941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig92.19941.1 >prot_D-dichotoma_M_contig92.19941.1 ID=prot_D-dichotoma_M_contig92.19941.1|Name=mRNA_D-dichotoma_M_contig92.19941.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=591bp RQLVILTRDREDIVSRHEGEIEKLEHEMQDGKNLLAAAEARASEADAALAback to top mRNA from alignment at D-dichotoma_M_contig92:513067..552757+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig92.19941.1 ID=mRNA_D-dichotoma_M_contig92.19941.1|Name=mRNA_D-dichotoma_M_contig92.19941.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=39691bp|location=Sequence derived from alignment at D-dichotoma_M_contig92:513067..552757+ (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig92:513067..552757+ >mRNA_D-dichotoma_M_contig92.19941.1 ID=mRNA_D-dichotoma_M_contig92.19941.1|Name=mRNA_D-dichotoma_M_contig92.19941.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=3546bp|location=Sequence derived from alignment at D-dichotoma_M_contig92:513067..552757+ (Dictyota dichotoma ODC1387m male)back to top |