mRNA_D-dichotoma_M_contig92.19939.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig92.19939.1
Unique NamemRNA_D-dichotoma_M_contig92.19939.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig92.19939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig92contigD-dichotoma_M_contig92:509874..510984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size418
Cds size417
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig92.19939.1prot_D-dichotoma_M_contig92.19939.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig92 509874..510984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.8101268-CDS-D-dichotoma_M_contig92:509873..5100651622931148.8101268-CDS-D-dichotoma_M_contig92:509873..510065Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig92 509874..510065 +
1690799636.4470403-CDS-D-dichotoma_M_contig92:509873..5100651690799636.4470403-CDS-D-dichotoma_M_contig92:509873..510065Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig92 509874..510065 +
1622931148.8324087-CDS-D-dichotoma_M_contig92:510329..5105301622931148.8324087-CDS-D-dichotoma_M_contig92:510329..510530Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig92 510330..510530 +
1690799636.4579597-CDS-D-dichotoma_M_contig92:510329..5105301690799636.4579597-CDS-D-dichotoma_M_contig92:510329..510530Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig92 510330..510530 +
1622931148.8571937-CDS-D-dichotoma_M_contig92:510960..5109841622931148.8571937-CDS-D-dichotoma_M_contig92:510960..510984Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig92 510961..510984 +
1690799636.4686692-CDS-D-dichotoma_M_contig92:510960..5109841690799636.4686692-CDS-D-dichotoma_M_contig92:510960..510984Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig92 510961..510984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig92.19939.1

>prot_D-dichotoma_M_contig92.19939.1 ID=prot_D-dichotoma_M_contig92.19939.1|Name=mRNA_D-dichotoma_M_contig92.19939.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=139bp
ESTKSSGSSSLSGGLVPLGLTRSRPSTTSSSTLRHLDSSTCRDDRQDGDG
DEDMKRSNMSDLKKDTSTSAVRSAESGKRRGSRRGRKQASRGPDSYSTTH
EDGSPGPSSSMAEKRKDDGDDDEYMFMGAMTGRKDRRSS
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mRNA from alignment at D-dichotoma_M_contig92:509874..510984+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig92.19939.1 ID=mRNA_D-dichotoma_M_contig92.19939.1|Name=mRNA_D-dichotoma_M_contig92.19939.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1111bp|location=Sequence derived from alignment at D-dichotoma_M_contig92:509874..510984+ (Dictyota dichotoma ODC1387m male)
GAAAGTACAAAGTCTTCAGGATCGAGCTCTCTTAGTGGAGGGTTAGTCCC
TCTTGGGCTAACGAGGTCGAGACCTTCAACTACGTCGAGTTCGACATTGC
GGCACCTAGATTCATCGACTTGTCGAGACGATCGACAAGATGGGGATGGT
GATGAGGATATGAAGAGGTCTAATATGAGCGATTTGAAAAAGGTGCCTAG
GACTCTATGTTATCGTGGGCTACTTTGCGTCAGCAGTATCGTATCTTGTT
TGAAATACATGTTCGAAATATCTTCGGTCACGAGCCATGATATGCAACGT
ACCCGAGTCTTCAAGTCAGGTATGGATGACATGCCGACCGGTGGCTCGAG
CTATTGGGTGTCTGCGTTGTATCCATCATGTGTTTTTACTCGTTCAATGT
TTCGACTTGGTAATCTGTCTGCCAATCCACGCTTTCTGTCTTCAATTCTG
GCGTAGGACACATCGACATCGGCGGTGCGCTCTGCAGAGAGCGGGAAGCG
CCGGGGGTCTCGTCGGGGCAGGAAGCAGGCATCCCGTGGACCTGACTCGT
ATTCGACAACTCACGAGGACGGAAGCCCAGGGCCTTCATCGTCCATGGCG
GAAAAAAGAAAGGACGACGGAGATGATGATGAATACATGTTCATGGGAGC
GATGACGGTGTGTTGGAGGTAGATATGATACTCCTAACTTTGGCCAGAGA
TCGCGTCGAAAGTTCTATTCAAATCATATGGAGAGATGTAACATATTGCA
GGGACATGATCGGCGCTTGGTGCGTTCTCCTAAACTCAACTTTAACCTCA
CAGGAGTGGAAATTTGCGAATTCACGTGTAAACAAAACCTCATTCGAACG
TGGCTCGTGCGTGCTGAAGTCGAAAGTTGGCCTAATGTTACATATTGTAC
AGCGCATCTTCGGAGGCTAAATCGCCCAGAAGCCTGTCCAGTAATGGTCG
TACTGTATGATACTGTTGGCCGATGTCAGGCCTCAGGCCTTAGCCCTTTC
GCAGTCTTCTCCGCCCGCCCCCAAAGAGTACACTTTGTCCCGCTTCGTGT
GATTTTCGGATTCATCGCCTGGATCATCTTTCTACAGGGTAGAAAAGACC
GACGGAGTAGC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig92:509874..510984+

>mRNA_D-dichotoma_M_contig92.19939.1 ID=mRNA_D-dichotoma_M_contig92.19939.1|Name=mRNA_D-dichotoma_M_contig92.19939.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=834bp|location=Sequence derived from alignment at D-dichotoma_M_contig92:509874..510984+ (Dictyota dichotoma ODC1387m male)
GAAAGTACAAAGTCTTCAGGATCGAGCTCTCTTAGTGGAGGGTTAGTCCC
TCTTGGGCTAACGAGGTCGAGACCTTCAACTACGTCGAGTTCGACATTGC
GGCACCTAGATTCATCGACTTGTCGAGACGATCGACAAGATGGGGATGGT
GATGAGGATATGAAGAGGTCTAATATGAGCGATTTGAAAAAGGAAAGTAC
AAAGTCTTCAGGATCGAGCTCTCTTAGTGGAGGGTTAGTCCCTCTTGGGC
TAACGAGGTCGAGACCTTCAACTACGTCGAGTTCGACATTGCGGCACCTA
GATTCATCGACTTGTCGAGACGATCGACAAGATGGGGATGGTGATGAGGA
TATGAAGAGGTCTAATATGAGCGATTTGAAAAAGGACACATCGACATCGG
CGGTGCGCTCTGCAGAGAGCGGGAAGCGCCGGGGGTCTCGTCGGGGCAGG
AAGCAGGCATCCCGTGGACCTGACTCGTATTCGACAACTCACGAGGACGG
AAGCCCAGGGCCTTCATCGTCCATGGCGGAAAAAAGAAAGGACGACGGAG
ATGATGATGAATACATGTTCATGGGAGCGATGACGGACACATCGACATCG
GCGGTGCGCTCTGCAGAGAGCGGGAAGCGCCGGGGGTCTCGTCGGGGCAG
GAAGCAGGCATCCCGTGGACCTGACTCGTATTCGACAACTCACGAGGACG
GAAGCCCAGGGCCTTCATCGTCCATGGCGGAAAAAAGAAAGGACGACGGA
GATGATGATGAATACATGTTCATGGGAGCGATGACGGGTAGAAAAGACCG
ACGGAGTAGCGGTAGAAAAGACCGACGGAGTAGC
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