mRNA_D-dichotoma_M_contig92.19934.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig92.19934.1
Unique NamemRNA_D-dichotoma_M_contig92.19934.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig92.19934.1 vs. uniprot
Match: D8LRH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH3_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 7.200e-26
Identity = 65/91 (71.43%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:  118 PLTFDEKKALSVAINKLDQTNLTRVVEIIQARMPLGNHEEEIELDIDAMDTLTLRDLQKFILDVGLKGRSRKGSRGRSSAPSDSESESEAW 390
            PLTFDEKKALSVAIN LDQ+NLTRVVEIIQARMPLG+ +EEIELDID+MD LTLRDLQ FI DV  KG  R+G  G      DS+S+ E W
Sbjct: 1062 PLTFDEKKALSVAINNLDQSNLTRVVEIIQARMPLGSSDEEIELDIDSMDNLTLRDLQGFIKDVSDKGGGRRGGGGV-----DSDSDGEQW 1147
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BLAST of mRNA_D-dichotoma_M_contig92.19934.1 vs. uniprot
Match: A0A836CDK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.600e-11
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:  121 LTFDEKKALSVAINKLDQTNLTRVVEIIQARMPLGNHEE-EIELDIDAMDTLTLRDLQKFILDVGLKGRS---RKGSRGRSSAPSDSESE---SEAW 390
            LTF+EK+ LSV IN+L    LTRVV+IIQ RMPLG  +E EIE+DID+MDT TLR+LQ ++     +G +   R  SR R+S  +D  S+    E W
Sbjct:  632 LTFEEKRQLSVNINRLPAEKLTRVVQIIQERMPLGAQDESEIEIDIDSMDTGTLRELQIYVESCMRRGSTFSKRSASRRRASPSNDYASDFDSDEEW 728
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BLAST of mRNA_D-dichotoma_M_contig92.19934.1 vs. uniprot
Match: A0A6U4KPS7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KPS7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.170e-9
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1 
Query:  118 PLTFDEKKALSVAINKLDQTNLTRVVEIIQARMPLGNH--EEEIELDIDAMDTLTLRDLQKFILDVGLKGRSRKGSRG 345
            P+T +EKK L+ AI++L    + +V+EII  R+ LG H  +EEIELDIDA+DT T+R+LQ ++  V   G  RKG  G
Sbjct:  675 PVTLEEKKQLTKAIHRLPYEKVNKVIEIISERVHLGAHAGDEEIELDIDALDTATIRELQNYVNKVS--GSKRKGDGG 750
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BLAST of mRNA_D-dichotoma_M_contig92.19934.1 vs. uniprot
Match: L8GEB6_ACACA (Bromodomain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GEB6_ACACA)

HSP 1 Score: 68.6 bits (166), Expect = 4.380e-9
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:  118 PLTFDEKKALSVAINKLDQTNLTRVVEIIQARMP-LGNHEEEIELDIDAMDTLTLRDLQKFILDVGLKGRSR 330
            P+TF+EKK LS AIN L   NL  VV+II  RMP L +  EEIE+DIDA++  TLR L++++  V  +GR R
Sbjct:  296 PMTFEEKKKLSHAINNLPSDNLGMVVKIIHERMPQLTSSGEEIEIDIDALNPATLRHLERYVRSVTQRGRRR 367
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BLAST of mRNA_D-dichotoma_M_contig92.19934.1 vs. uniprot
Match: A0A0L0DUH3_THETB (Bromodomain containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DUH3_THETB)

HSP 1 Score: 68.2 bits (165), Expect = 6.180e-9
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:  118 PLTFDEKKALSVAINKLDQTNLTRVVEIIQARMPLGNHEEEIELDIDAMDTLTLRDLQKFI 300
            P+ ++EKK L+  IN+L  + L RV+EII+  MPL N +EEIE+DIDA+D  TLR L+ ++
Sbjct:  700 PMDYNEKKRLTTNINRLPSSKLVRVIEIIKESMPLENQDEEIEIDIDALDNKTLRKLEAYV 760
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BLAST of mRNA_D-dichotoma_M_contig92.19934.1 vs. uniprot
Match: A0A7S2XZ98_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ98_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.380e-8
Identity = 33/78 (42.31%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:  121 LTFDEKKALSVAINKLDQTNLTRVVEIIQARMPLG---NHEEEIELDIDAMDTLTLRDLQKFILDVGLKGRSRKGSRG 345
            ++F +K+ LS+ INKL    LT+VV+IIQ  MPLG   + +EE+E+DIDA+D  TLR L +++ +  ++ ++ + S+G
Sbjct:  200 MSFQDKRNLSLRINKLPPKKLTKVVQIIQESMPLGQKGSEDEEVEIDIDALDEPTLRRLDEYVRNALVRKKTPRHSKG 277
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BLAST of mRNA_D-dichotoma_M_contig92.19934.1 vs. uniprot
Match: A0A2P6NFH8_9EUKA (Bromodomain-containing protein 4-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NFH8_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 2.720e-7
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:  121 LTFDEKKALSVAINKLDQTNLTRVVEIIQARMP--LGNHEEEIELDIDAMDTLTLRDLQKFILDVGLK 318
            +TF+EK+ LS +IN     NL RVVEII   MP    N  +EIE++ID +DT+TLR L+K++  V  K
Sbjct:  650 MTFEEKRELSQSINNFSNENLGRVVEIISQHMPSLAQNKPDEIEIEIDTLDTVTLRALEKYVKSVNSK 717
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BLAST of mRNA_D-dichotoma_M_contig92.19934.1 vs. uniprot
Match: UPI0005212D6F (bromodomain-containing protein 2-like n=3 Tax=Neognathae TaxID=8825 RepID=UPI0005212D6F)

HSP 1 Score: 58.5 bits (140), Expect = 2.900e-7
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:  118 PLTFDEKKALSVAINKLDQTNLTRVVEIIQARMPL--GNHEEEIELDIDAMDTLTLRDLQKFIL 303
            P+T+DEK+ LS+ INKL    L RVV IIQ+R P    ++ EEIE+D + +   TLR+L++++L
Sbjct:   27 PMTYDEKRQLSLDINKLPGEKLGRVVHIIQSREPSLRDSNPEEIEIDFETLKPSTLRELERYVL 90
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BLAST of mRNA_D-dichotoma_M_contig92.19934.1 vs. uniprot
Match: V8PFR9_OPHHA (Bromodomain testis-specific protein (Fragment) n=1 Tax=Ophiophagus hannah TaxID=8665 RepID=V8PFR9_OPHHA)

HSP 1 Score: 62.8 bits (151), Expect = 3.270e-7
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:  118 PLTFDEKKALSVAINKLDQTNLTRVVEIIQARMPLGNHE--EEIELDIDAMDTLTLRDLQKFILDVGLKGRSRK 333
            P+T+DEK+ LS+ INKL    L+RVV IIQ+R P   H   EEIE+D +++ T TLR L+K+++   L+ R +K
Sbjct:  526 PMTYDEKRQLSLDINKLPGEKLSRVVYIIQSREPSLRHSNLEEIEIDFESLKTSTLRALEKYVM-TSLRKRPKK 598
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BLAST of mRNA_D-dichotoma_M_contig92.19934.1 vs. uniprot
Match: UPI000A1C67C6 (LOW QUALITY PROTEIN: bromodomain-containing protein 2-like n=2 Tax=Oxudercinae TaxID=497678 RepID=UPI000A1C67C6)

HSP 1 Score: 62.4 bits (150), Expect = 4.460e-7
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:  118 PLTFDEKKALSVAINKLDQTNLTRVVEIIQARMPL--GNHEEEIELDIDAMDTLTLRDLQKFILDVGLKGRSRKGSRGRSSAPSDSESE 378
            P+T+DEK+ LS+ INKL    L RVV IIQ+R P     + EEIE+D + +   TL++L++++L   L+ R RK   G+SS+   S+ E
Sbjct:  645 PMTYDEKRQLSLDINKLPGEKLGRVVHIIQSREPALRDTNPEEIEIDFETLKPSTLKELERYVLSC-LRKRPRKPFSGKSSSLGKSKEE 732
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig92.19934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRH3_ECTSI7.200e-2671.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDK9_9STRA1.600e-1150.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U4KPS7_9STRA3.170e-948.72Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
L8GEB6_ACACA4.380e-952.78Bromodomain containing protein n=1 Tax=Acanthamoeb... [more]
A0A0L0DUH3_THETB6.180e-950.82Bromodomain containing protein n=1 Tax=Thecamonas ... [more]
A0A7S2XZ98_9STRA4.380e-842.31Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2P6NFH8_9EUKA2.720e-748.53Bromodomain-containing protein 4-like n=1 Tax=Plan... [more]
UPI0005212D6F2.900e-746.88bromodomain-containing protein 2-like n=3 Tax=Neog... [more]
V8PFR9_OPHHA3.270e-747.30Bromodomain testis-specific protein (Fragment) n=1... [more]
UPI000A1C67C64.460e-742.70LOW QUALITY PROTEIN: bromodomain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig92contigD-dichotoma_M_contig92:251693..252651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue9.6e-25
Seed eggNOG ortholog2880.D8LRH3
KEGG koko:K11684
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsCOG5076@1,KOG1474@2759
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size959
Cds size393
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.9687026-CDS-D-dichotoma_M_contig92:251692..2520851622931149.9687026-CDS-D-dichotoma_M_contig92:251692..252085Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig92 251693..252085 +
1690799637.03334-CDS-D-dichotoma_M_contig92:251692..2520851690799637.03334-CDS-D-dichotoma_M_contig92:251692..252085Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig92 251693..252085 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.980044-UTR-D-dichotoma_M_contig92:252085..2526511622931149.980044-UTR-D-dichotoma_M_contig92:252085..252651Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig92 252086..252651 +
1690799637.0467494-UTR-D-dichotoma_M_contig92:252085..2526511690799637.0467494-UTR-D-dichotoma_M_contig92:252085..252651Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig92 252086..252651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig92.19934.1prot_D-dichotoma_M_contig92.19934.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig92 251693..252085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig92.19934.1

>prot_D-dichotoma_M_contig92.19934.1 ID=prot_D-dichotoma_M_contig92.19934.1|Name=mRNA_D-dichotoma_M_contig92.19934.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=131bp
GQSKGGGYSRGGGDSSAAQAAGTATKADEDAEAAAAAAAPLTFDEKKALS
VAINKLDQTNLTRVVEIIQARMPLGNHEEEIELDIDAMDTLTLRDLQKFI
LDVGLKGRSRKGSRGRSSAPSDSESESEAW*
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mRNA from alignment at D-dichotoma_M_contig92:251693..252651+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig92.19934.1 ID=mRNA_D-dichotoma_M_contig92.19934.1|Name=mRNA_D-dichotoma_M_contig92.19934.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=959bp|location=Sequence derived from alignment at D-dichotoma_M_contig92:251693..252651+ (Dictyota dichotoma ODC1387m male)
GGCCAATCGAAGGGAGGGGGATACTCCCGAGGAGGGGGGGACTCATCAGC
AGCACAGGCCGCGGGGACAGCGACTAAGGCAGACGAGGATGCTGAAGCCG
CGGCAGCTGCTGCCGCCCCCCTAACCTTTGATGAGAAGAAGGCCTTGAGT
GTAGCTATAAACAAGCTAGATCAGACGAATCTTACACGTGTAGTGGAAAT
TATCCAGGCCCGTATGCCTCTAGGAAATCATGAGGAGGAAATCGAGCTAG
ATATCGATGCCATGGACACGCTTACATTGCGTGACCTTCAAAAATTCATT
CTTGATGTTGGCCTGAAGGGACGATCTCGAAAAGGGAGTCGAGGTCGCTC
GTCCGCGCCTTCTGATTCTGAGTCCGAGTCTGAGGCGTGGTAAAGTGAAC
CGAAGTGTACCGGTTATGCAGACGCTAGAATGTAGTTAGATGTCGTGGGA
CGTTGCTTGTGAGACGAGTGTCGGGATCTACAGCATACAATGTGATGGTG
ATCGAAAGCATCCACTCGTGCCCTCGTGCCTCCAGAGGTTACCTGTTGGT
GTCATGCTCTTGAGTCATGGACATGCTGCACCTGGACCGCCATCACACCA
CGGGTATCCCGAGCTCTACGGCCGACCTTAAGAGACCGTTGTCTCTTGCG
CATGTCGCTGTCCCCTGTCGAATGAACCTCACCCGATACTTGATAGACCT
TAGACATTCGTTTAATTCTCCATGTTAAGTGTAGTGAATGACAGGAGTTC
CACGCTGTGCCGATTCTAGGGGTTATTGCAATACAGTAGACTTATCTGTA
GGGCTACGAAAATAAGGCAGCAACGGTCCGCAATGTACTGTACTGTACTG
CACTGCCGAGCACCGCATGAACTTTGGCAATCCGTTGGTGGTACTATGCC
GGCAGCCTAGAAATGCCTTGATTATGGCGAAACAAACGCATTAAGCGTGC
AGGAGGGCC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig92:251693..252651+

>mRNA_D-dichotoma_M_contig92.19934.1 ID=mRNA_D-dichotoma_M_contig92.19934.1|Name=mRNA_D-dichotoma_M_contig92.19934.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=786bp|location=Sequence derived from alignment at D-dichotoma_M_contig92:251693..252651+ (Dictyota dichotoma ODC1387m male)
GGCCAATCGAAGGGAGGGGGATACTCCCGAGGAGGGGGGGACTCATCAGC
AGCACAGGCCGCGGGGACAGCGACTAAGGCAGACGAGGATGCTGAAGCCG
CGGCAGCTGCTGCCGCCCCCCTAACCTTTGATGAGAAGAAGGCCTTGAGT
GTAGCTATAAACAAGCTAGATCAGACGAATCTTACACGTGTAGTGGAAAT
TATCCAGGCCCGTATGCCTCTAGGAAATCATGAGGAGGAAATCGAGCTAG
ATATCGATGCCATGGACACGCTTACATTGCGTGACCTTCAAAAATTCATT
CTTGATGTTGGCCTGAAGGGACGATCTCGAAAAGGGAGTCGAGGTCGCTC
GTCCGCGCCTTCTGATTCTGAGTCCGAGTCTGAGGCGTGGTAAGGCCAAT
CGAAGGGAGGGGGATACTCCCGAGGAGGGGGGGACTCATCAGCAGCACAG
GCCGCGGGGACAGCGACTAAGGCAGACGAGGATGCTGAAGCCGCGGCAGC
TGCTGCCGCCCCCCTAACCTTTGATGAGAAGAAGGCCTTGAGTGTAGCTA
TAAACAAGCTAGATCAGACGAATCTTACACGTGTAGTGGAAATTATCCAG
GCCCGTATGCCTCTAGGAAATCATGAGGAGGAAATCGAGCTAGATATCGA
TGCCATGGACACGCTTACATTGCGTGACCTTCAAAAATTCATTCTTGATG
TTGGCCTGAAGGGACGATCTCGAAAAGGGAGTCGAGGTCGCTCGTCCGCG
CCTTCTGATTCTGAGTCCGAGTCTGAGGCGTGGTAA
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