mRNA_D-dichotoma_M_contig92.19931.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig92.19931.1
Unique NamemRNA_D-dichotoma_M_contig92.19931.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig92.19931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig92contigD-dichotoma_M_contig92:199047..199878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size832
Cds size519
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig92.19931.1prot_D-dichotoma_M_contig92.19931.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig92 199061..199579 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.9656866-UTR-D-dichotoma_M_contig92:199046..1990601622931148.9656866-UTR-D-dichotoma_M_contig92:199046..199060Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig92 199047..199060 +
1690799636.5045445-UTR-D-dichotoma_M_contig92:199046..1990601690799636.5045445-UTR-D-dichotoma_M_contig92:199046..199060Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig92 199047..199060 +
1622931149.001723-UTR-D-dichotoma_M_contig92:199579..1998781622931149.001723-UTR-D-dichotoma_M_contig92:199579..199878Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig92 199580..199878 +
1690799636.5325403-UTR-D-dichotoma_M_contig92:199579..1998781690799636.5325403-UTR-D-dichotoma_M_contig92:199579..199878Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig92 199580..199878 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.981697-CDS-D-dichotoma_M_contig92:199060..1995791622931148.981697-CDS-D-dichotoma_M_contig92:199060..199579Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig92 199061..199579 +
1690799636.5193367-CDS-D-dichotoma_M_contig92:199060..1995791690799636.5193367-CDS-D-dichotoma_M_contig92:199060..199579Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig92 199061..199579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig92.19931.1

>prot_D-dichotoma_M_contig92.19931.1 ID=prot_D-dichotoma_M_contig92.19931.1|Name=mRNA_D-dichotoma_M_contig92.19931.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=173bp
MCGRQSVHMAVEAFGTVGVLTQDQAEKAAVQESQPQRPCKMVEITEEKRK
QGKALEATGEAARKQGLAPTGGERPSGIELATSRQALCGDPLAGMGAERR
REMKTPFAALAKEKGELPLRETDQGNRKDRVQHIVDAQEQSYREAVPRRE
TNRRLETSRRRRRGRRRRVEMA*
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mRNA from alignment at D-dichotoma_M_contig92:199047..199878+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig92.19931.1 ID=mRNA_D-dichotoma_M_contig92.19931.1|Name=mRNA_D-dichotoma_M_contig92.19931.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=832bp|location=Sequence derived from alignment at D-dichotoma_M_contig92:199047..199878+ (Dictyota dichotoma ODC1387m male)
GACCTGGATCGATAATGTGTGGGAGGCAATCGGTACATATGGCGGTCGAG
GCGTTCGGTACGGTGGGTGTGCTCACTCAAGATCAAGCTGAGAAAGCGGC
GGTCCAAGAGAGCCAGCCGCAACGCCCGTGCAAGATGGTAGAGATAACGG
AAGAGAAGAGGAAGCAAGGCAAAGCGCTCGAGGCTACGGGAGAAGCGGCC
CGCAAGCAAGGACTGGCACCGACCGGTGGGGAACGGCCGAGTGGGATAGA
GCTGGCGACCAGTCGGCAAGCGTTGTGCGGGGACCCTCTTGCGGGAATGG
GGGCTGAGAGAAGACGTGAGATGAAAACTCCGTTTGCGGCTTTAGCGAAG
GAGAAGGGGGAGCTTCCGCTACGTGAGACGGACCAAGGCAACCGGAAGGA
CCGTGTGCAACACATCGTCGACGCCCAAGAACAGTCGTACAGGGAAGCTG
TCCCGCGACGGGAGACGAACCGGAGGCTGGAGACAAGTCGGAGGCGGAGA
CGCGGGAGACGGCGTCGAGTGGAAATGGCATGAGGAGCGGATGCGGTTTA
CTGTGGGGGATTTTGTCCGGGTGGTGTTTGTTCGAATGTCAGAGGACCTT
ATCTTGGGGATGTGTGGTGTACCCGGAAATCCGGGTAACACAAAAATGGT
TAAATGTATGGACGGGGCGAACGAGGAACTGAAACGGGTGCGGTTATCAA
AGGAGGACACGAGGAGACTCTGGGAGCGATATGAGGCGGTATAGGTTGTA
GGCCGGTGGTTCGGGGTTTTCTACAGAATGGGCGTTTCCGTAGGAATTGA
TGAAGCCTGATCACGGGTGACGCCATCGGAAT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig92:199047..199878+

>mRNA_D-dichotoma_M_contig92.19931.1 ID=mRNA_D-dichotoma_M_contig92.19931.1|Name=mRNA_D-dichotoma_M_contig92.19931.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1038bp|location=Sequence derived from alignment at D-dichotoma_M_contig92:199047..199878+ (Dictyota dichotoma ODC1387m male)
ATGTGTGGGAGGCAATCGGTACATATGGCGGTCGAGGCGTTCGGTACGGT
GGGTGTGCTCACTCAAGATCAAGCTGAGAAAGCGGCGGTCCAAGAGAGCC
AGCCGCAACGCCCGTGCAAGATGGTAGAGATAACGGAAGAGAAGAGGAAG
CAAGGCAAAGCGCTCGAGGCTACGGGAGAAGCGGCCCGCAAGCAAGGACT
GGCACCGACCGGTGGGGAACGGCCGAGTGGGATAGAGCTGGCGACCAGTC
GGCAAGCGTTGTGCGGGGACCCTCTTGCGGGAATGGGGGCTGAGAGAAGA
CGTGAGATGAAAACTCCGTTTGCGGCTTTAGCGAAGGAGAAGGGGGAGCT
TCCGCTACGTGAGACGGACCAAGGCAACCGGAAGGACCGTGTGCAACACA
TCGTCGACGCCCAAGAACAGTCGTACAGGGAAGCTGTCCCGCGACGGGAG
ACGAACCGGAGGCTGGAGACAAGTCGGAGGCGGAGACGCGGGAGACGGCG
TCGAGTGGAAATGGCATGAATGTGTGGGAGGCAATCGGTACATATGGCGG
TCGAGGCGTTCGGTACGGTGGGTGTGCTCACTCAAGATCAAGCTGAGAAA
GCGGCGGTCCAAGAGAGCCAGCCGCAACGCCCGTGCAAGATGGTAGAGAT
AACGGAAGAGAAGAGGAAGCAAGGCAAAGCGCTCGAGGCTACGGGAGAAG
CGGCCCGCAAGCAAGGACTGGCACCGACCGGTGGGGAACGGCCGAGTGGG
ATAGAGCTGGCGACCAGTCGGCAAGCGTTGTGCGGGGACCCTCTTGCGGG
AATGGGGGCTGAGAGAAGACGTGAGATGAAAACTCCGTTTGCGGCTTTAG
CGAAGGAGAAGGGGGAGCTTCCGCTACGTGAGACGGACCAAGGCAACCGG
AAGGACCGTGTGCAACACATCGTCGACGCCCAAGAACAGTCGTACAGGGA
AGCTGTCCCGCGACGGGAGACGAACCGGAGGCTGGAGACAAGTCGGAGGC
GGAGACGCGGGAGACGGCGTCGAGTGGAAATGGCATGA
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