mRNA_D-dichotoma_M_contig92.19930.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig92.19930.1
Unique NamemRNA_D-dichotoma_M_contig92.19930.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig92.19930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig92contigD-dichotoma_M_contig92:197447..197899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size454
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.903674-UTR-D-dichotoma_M_contig92:197446..1974671622931148.903674-UTR-D-dichotoma_M_contig92:197446..197467Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig92 197447..197467 +
1690799636.4802115-UTR-D-dichotoma_M_contig92:197446..1974671690799636.4802115-UTR-D-dichotoma_M_contig92:197446..197467Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig92 197447..197467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.9181645-CDS-D-dichotoma_M_contig92:197467..1978991622931148.9181645-CDS-D-dichotoma_M_contig92:197467..197899Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig92 197468..197899 +
1690799636.4942212-CDS-D-dichotoma_M_contig92:197467..1978991690799636.4942212-CDS-D-dichotoma_M_contig92:197467..197899Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig92 197468..197899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig92.19930.1prot_D-dichotoma_M_contig92.19930.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig92 197468..197899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig92.19930.1

>prot_D-dichotoma_M_contig92.19930.1 ID=prot_D-dichotoma_M_contig92.19930.1|Name=mRNA_D-dichotoma_M_contig92.19930.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=144bp
MGKLSGKYEMVEEERWRLKKERGDRKQTSAKSSGPHDQGAGLKTGTGRGT
PNVDERATPRVQECRRCGGRGHHWRECPSDPAVAEVNQARMGTQPEPLSG
QEMNDGSGSRQAPESSSQGERRPFHGDCFFCGEAGHVQRRCPRR
back to top

mRNA from alignment at D-dichotoma_M_contig92:197447..197899+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig92.19930.1 ID=mRNA_D-dichotoma_M_contig92.19930.1|Name=mRNA_D-dichotoma_M_contig92.19930.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=453bp|location=Sequence derived from alignment at D-dichotoma_M_contig92:197447..197899+ (Dictyota dichotoma ODC1387m male)
CCCGATGAAGTGTTTGCGCTGATGGGGAAACTAAGCGGGAAGTATGAGAT
GGTGGAGGAGGAGAGATGGAGATTGAAGAAAGAGAGGGGTGATAGAAAAC
AGACGTCAGCCAAGAGCTCTGGACCTCATGACCAGGGAGCCGGATTGAAG
ACGGGGACAGGGCGGGGAACGCCTAACGTGGATGAACGAGCAACTCCCAG
AGTGCAGGAGTGTCGGCGATGTGGAGGGAGAGGCCACCATTGGAGAGAAT
GCCCGTCGGATCCTGCCGTAGCTGAGGTAAATCAGGCTCGAATGGGGACC
CAGCCTGAGCCGCTAAGCGGACAGGAGATGAACGATGGTTCCGGGAGTCG
GCAGGCGCCAGAGAGCAGCAGTCAGGGAGAGCGCCGACCGTTCCATGGGG
ATTGCTTCTTCTGTGGAGAGGCTGGGCATGTCCAGAGACGGTGCCCGCGA
AGG
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig92:197447..197899+

>mRNA_D-dichotoma_M_contig92.19930.1 ID=mRNA_D-dichotoma_M_contig92.19930.1|Name=mRNA_D-dichotoma_M_contig92.19930.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=864bp|location=Sequence derived from alignment at D-dichotoma_M_contig92:197447..197899+ (Dictyota dichotoma ODC1387m male)
ATGGGGAAACTAAGCGGGAAGTATGAGATGGTGGAGGAGGAGAGATGGAG
ATTGAAGAAAGAGAGGGGTGATAGAAAACAGACGTCAGCCAAGAGCTCTG
GACCTCATGACCAGGGAGCCGGATTGAAGACGGGGACAGGGCGGGGAACG
CCTAACGTGGATGAACGAGCAACTCCCAGAGTGCAGGAGTGTCGGCGATG
TGGAGGGAGAGGCCACCATTGGAGAGAATGCCCGTCGGATCCTGCCGTAG
CTGAGGTAAATCAGGCTCGAATGGGGACCCAGCCTGAGCCGCTAAGCGGA
CAGGAGATGAACGATGGTTCCGGGAGTCGGCAGGCGCCAGAGAGCAGCAG
TCAGGGAGAGCGCCGACCGTTCCATGGGGATTGCTTCTTCTGTGGAGAGG
CTGGGCATGTCCAGAGACGGTGCCCGCGAAGGATGGGGAAACTAAGCGGG
AAGTATGAGATGGTGGAGGAGGAGAGATGGAGATTGAAGAAAGAGAGGGG
TGATAGAAAACAGACGTCAGCCAAGAGCTCTGGACCTCATGACCAGGGAG
CCGGATTGAAGACGGGGACAGGGCGGGGAACGCCTAACGTGGATGAACGA
GCAACTCCCAGAGTGCAGGAGTGTCGGCGATGTGGAGGGAGAGGCCACCA
TTGGAGAGAATGCCCGTCGGATCCTGCCGTAGCTGAGGTAAATCAGGCTC
GAATGGGGACCCAGCCTGAGCCGCTAAGCGGACAGGAGATGAACGATGGT
TCCGGGAGTCGGCAGGCGCCAGAGAGCAGCAGTCAGGGAGAGCGCCGACC
GTTCCATGGGGATTGCTTCTTCTGTGGAGAGGCTGGGCATGTCCAGAGAC
GGTGCCCGCGAAGG
back to top