mRNA_D-dichotoma_M_contig92.19927.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig92.19927.1
Unique NamemRNA_D-dichotoma_M_contig92.19927.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig92.19927.1 vs. uniprot
Match: A0A6H5L4P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4P7_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 3.530e-24
Identity = 67/109 (61.47%), Postives = 73/109 (66.97%), Query Frame = 1 
Query:    4 DEALVLAAEAANERLCPLASNSVLAVVKTVLACVKREMLDTSWGRRLVSVAPSSPPDAAVVGALAILAAIREDPVGADLALALLSMAVSSYRRDTVSVPFPNQLESAGG 330
            D+ LV A EAAN RL PL+ NSV A V TVL CVKRE    S        A       A + A A+LAAI+EDP+GADL LALLSMAVSSYRRDTVS PFP QLES GG
Sbjct:  101 DDVLVPATEAANGRLRPLSCNSVRAAVTTVLQCVKREAGSASVLSSGDKGAEGGGAARARLAAEAVLAAIKEDPLGADLVLALLSMAVSSYRRDTVSTPFPKQLESPGG 209
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BLAST of mRNA_D-dichotoma_M_contig92.19927.1 vs. uniprot
Match: D8LRG8_ECTSI (Poly (ADP-ribose) polymerase family, member 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG8_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 4.800e-24
Identity = 69/110 (62.73%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:    4 DEALVLAAEAANERLCPLASNSVLAVVKTVLACVKREMLDTSWGRRLVSVAPSSPPDA-AVVGALAILAAIREDPVGADLALALLSMAVSSYRRDTVSVPFPNQLESAGG 330
            D+ LV A EAAN RL PL+ NSV AVV TVL CVKRE    S        A      A A + A A+LAAI+EDP+GADL LALLSMAVSSYRRDTVS PFP QLES GG
Sbjct:  101 DDVLVPATEAANGRLRPLSCNSVRAVVTTVLQCVKREAASASVLSSGDKGAEGGGGAARARLAAEAVLAAIKEDPLGADLVLALLSMAVSSYRRDTVSTPFPKQLESPGG 210
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig92.19927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4P7_9PHAE3.530e-2461.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRG8_ECTSI4.800e-2462.73Poly (ADP-ribose) polymerase family, member 8 n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig92contigD-dichotoma_M_contig92:119030..123993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPoly(ADP-ribose) polymerase, catalytic domain
Ec32 orthologEc-18_004480.1
Exons2
Model size332
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.424801-CDS-D-dichotoma_M_contig92:119029..1193071622931149.424801-CDS-D-dichotoma_M_contig92:119029..119307Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig92 119030..119307 +
1690799636.704645-CDS-D-dichotoma_M_contig92:119029..1193071690799636.704645-CDS-D-dichotoma_M_contig92:119029..119307Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig92 119030..119307 +
1622931149.4406047-CDS-D-dichotoma_M_contig92:123941..1239931622931149.4406047-CDS-D-dichotoma_M_contig92:123941..123993Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig92 123942..123993 +
1690799636.7173805-CDS-D-dichotoma_M_contig92:123941..1239931690799636.7173805-CDS-D-dichotoma_M_contig92:123941..123993Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig92 123942..123993 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig92.19927.1prot_D-dichotoma_M_contig92.19927.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig92 119030..123993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig92.19927.1

>prot_D-dichotoma_M_contig92.19927.1 ID=prot_D-dichotoma_M_contig92.19927.1|Name=mRNA_D-dichotoma_M_contig92.19927.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=110bp
GDEALVLAAEAANERLCPLASNSVLAVVKTVLACVKREMLDTSWGRRLVS
VAPSSPPDAAVVGALAILAAIREDPVGADLALALLSMAVSSYRRDTVSVP
FPNQLESAGG
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mRNA from alignment at D-dichotoma_M_contig92:119030..123993+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig92.19927.1 ID=mRNA_D-dichotoma_M_contig92.19927.1|Name=mRNA_D-dichotoma_M_contig92.19927.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=4964bp|location=Sequence derived from alignment at D-dichotoma_M_contig92:119030..123993+ (Dictyota dichotoma ODC1387m male)
GGTGATGAAGCCTTGGTGCTTGCAGCAGAGGCGGCAAACGAGCGCTTGTG
TCCGCTTGCTAGTAACTCCGTCTTGGCGGTAGTGAAGACGGTGTTGGCGT
GCGTCAAGCGAGAGATGCTAGACACCTCGTGGGGGCGCCGTTTGGTATCC
GTGGCACCGTCCAGCCCACCTGACGCGGCTGTTGTGGGAGCTCTAGCAAT
CCTGGCGGCGATTCGAGAGGACCCAGTGGGAGCCGACCTCGCCCTTGCAT
TGCTGAGCATGGCTGTATCGTCCTACAGGTGAGGAGTCCAGAGATATTAT
TCTTTTCTCCTGGCGATGTAGCTGTTTTCTTGGGCTAAGCACCGTGTGTT
CTTCCTTCACCGATCGACATACTGTAGAAGATGTGATACTTCCTCTGTGC
CATAAGTAAAGTAAGTCCGTTTTGGGGGTTAGATCAGATCTCGCCAATGA
AGTTGCCCACGATGCTATAGTTTTGTTTGATGAAAAGCTGGGAATATGAG
GATGCTCATATCAATATATATATACATATATATCCGAGTCGTACCAACTG
AGAATTAGTGGGTCGAAAAGTAGGAATTTTGGCCGTTTTTTGGGTTTGGC
ACAGCCTCTTTAAGGTTTACAACCAGACACTACGTCAGCTGGCCAATAAC
GACTTTAGTGTGGAGCATACCGGGGTGACGGAGCGCCAGAGGGCAGAAAC
GTTAGAGCGGGTCGTAAAATATGATAAGGAGGCCTTCACGACGGCCTGGG
ACTACCTAGCATCAAGCCCCAGCGACGGCGAGGACGGTTAACGATTTTGT
TTTTCCAACAGttTTTTGCCCCTGGAAAAGGGGCAAAATACGGCCTTTTT
TCGGCCGACTGGATTTTTTTCGGCCGTTCATGCATGCAGGGCGGTGTGTG
CAGAAAAAAAACAAACACGGGTTTCAACTCGAAAAACACCGAAGATTTCC
AAAAAATTATCGCCTGCGGCATCGGACACGGCTACCGGTCCGTGTAATCA
TAACGGACTTTACTTATGGCACAGAGGAAGTATGTTTATTGGGGTAGTCG
ATTGCGCTTTTGCAGAACAACGATAAATACAAATCGCCTCTGAATGTGTG
GGTTCTCCAAACTGCCGTCGTTGCGACCATGACGTGGCATCGTCTTTGCG
CTGCCCGGGTGGCTGCACGTTAGGGCAAGACTGGCTTGGATATTGCAAAA
AGTGCTTCGTTGTCCATCAAGTTACGTGCCCATGTATCGATGCATCGCTT
ATACGTGTTTGGCATACGATACAAAGATATGACCATCACTAGTTATTGAT
AAGAAATTCCTCAAGAATTTTCTCAGAAATTCCCGAATTTTACCCCGAAT
TTTACCGCGAATTTTCCGACAGTAGAGGACTTACACGTAGAAACGTTTTG
AGGATACTTGTAGCTGTTGTGTACTATGATACGAATCATTCCAATGAAGA
CGGCCCTCCCGATTGACCCAAGATGCTGTTCGTTCGCATGGAACTCCTCC
ATCATGGAAACGAGGAGGTACTGTACTTCATGGTAGTTGATGACAGACCA
GAAGACTGCATTCACAAGCAACAAAGAGCGTATCTCAAGCGTCCCACCAC
ACGTGCCCATACGCGGCCAACTGCGCGTGATCATGACACAGCGTAAGCTC
AATCAGTCAGTATCAATTCCCTCGCAGATCCTACGAGCGATCCTCGTCCG
AATGGGGAGGTTGTCGTCCTCTAGCAGTCTTCTGTAATGTATCATGACAA
GTGTCGGATGGAGACATGTTTTACCCGTCGCCCAAGACAGGAGGTGCAGG
AGTGGAGGAGTAGGACATGTCTCGTTAGTTAGCTAGAACGGTGGAACGAA
CCTAATGAATAATGACACCAAACAAAGAAATCTGAAATATTTCAAAGACC
AAACCCCATGCAATGATTGTTCGATTTTCCTCAATTAATACTTCCGTTAT
TGCCAAGCACCTAGAGAACAGGATGCACGAAGAAGTAGTGAAATCGCATG
AGTAGTCGCTGACTTATGGGAAAAATTCTCAGATTTTTCCTCTTAAATTT
GGTGTCATTTGTTGTGTTCCACCGGAATAGTAATAGCTTTAGCCCATGAA
CAACCCATGACAGGGGTTGAACTTCGACAGCTTTAGCCAGCACCCCATGG
AACCGGTTGAATTACGCCACCTTTGGCCAGATCCATCCATCACTTGTCGA
ATTACGGCATCGTTCGTTTGATGCGTCAACCGTTGGAACCCTACCGTATT
GTGTGTGAGTCACACGACGATAACATGGCGGTGTATCCCAAACACGTTGA
GGCGTCGAGCGATACCGAGTTTCGTGGGACCGGAAATTTCGCTCGACGTT
AGGAAGTGGAGGGCGGGCAACCTTCTATTGGGTTTGGAATGTTGGAAAAA
CGACCAAGGCTTGCTTGTTTCGGAATTCCCCGTCATGTATGGATGGAAGT
TTCAGCCCCGTTTCAGGTCAGAGTCATCAGCAACGGATCCCATGCTTTGT
GTATTATCCCGACGTCATCACGCCATCACGCCATCATGTCATCATGTCAT
CACGTCGTCATGTCATGAAACGCCTTCACGGATCGATGAGATCTTCGTCC
TTCAACCTTCGACCTTCGACCGTCGACCTTCGGCCTCCAGCGGAGCATCC
TCGTCGTCCTCGATGGTCGGGACCGGCGGATTCATTCGTCGGTGAGGAAC
GTGCTGCCGATGCCTGTCGGGTCGTAGGATCTCGTCCACAAAGGTATGGC
ATGTCACTGGAGTTGAACGTCAGAAACACCGACATCTGGACGAAGCTCGC
GTCCCTCCTCGATCTATTGATCGACCGATCGAAGACACGTGCGTAAGGAG
GTTCCCGATCTCCCCGAGTCCCGCTGGACGGCGTCAGCCGACGATACCGG
CTGTCCTCTGCCGCAGCCGCGACCCTCGCCAGGGTTGGGTACTTCTTCAA
ACCTTTTTCAATGATACATGATCTCGTCGAAGAGGCAATAAGATTCCACC
AATCAGGGGTGGGAGATTGTCGTATGCTCAAAATAAAAGGTCAAAACGCG
CTTTTTCTTACAACGTGATCCTCCCTTAAACGTACATCCATGAGAATATT
TGTGCAAACTTCGCTGTGAATAAAGTCTATTTATGCATTTCCTCTTCGCC
GCCAGTACGTTCTCAAAATCATGTCCCATACAAGCACCGAGGTCTAATGT
TTCGTGTCCATCGTCATGACCTACAGTTCGAATCGAGAGCGACCAAACTC
TCGACTCCCGACGATAGTGCAGCAAGAGACAAGACACATTTGACCACATC
GCATCTCGTGCAGCAGCGGGGACTGCCTAGGCCTAAGATAGAGCGCCGCT
GCGTTCGTGCAGGCGAATGCTTGTAGGAGATGCTGGCTGGACAGAGTAAA
TATCGTCTAGTATATAGTATAGTATAGTGTGGTGTAGTGTAGTATAGTTT
TTTAGTGCGCCAATCACCAGAACAGTCCTTCTTTTTTGGAAAAAACAATA
TAACATCATTGTCACGATATTATATTGTTCCTTGGGCTCCACCGATGGAC
CGCTTGGTAAAATGCATAATTTCTCTTGCTCATTCACACCATCGTGAGGG
GCATGGGGTTTCCACGAGAGAGCAGGCATATGTGTTTCAATATCGCTTAG
TTAACCTCCAGAAACGAGCAGCGTTTGGAACAAGAAGCATGTTTTCCCGC
TTTCGTGCGTTGGACCTTCATACTGGCTGGCTGCCCCACCAAACCCATGG
CATATTCCTGCCCTCGAAAGCAGTCAAAAGACGTCGCCTGCTAAGAATCC
TGGATACTTCCAAGGGTTTCACCTGCTCATACCCGATCGCCCTCTCCTCT
CGCCATGCCGCGAGCTCTGTGCTTCTCCGGCGTGTCAATTTCCGTTGAGT
AACTTTCGAGACTGATGCTCTCCCGGGAAAATTCGACGAACTCCTCCGCT
TGCCTCTCGACCTCCTTCCTCGGTATCACCCTGCGCACCTTCCTCTTCAG
GGTCTCCGAGGCTGAGACTGAGGCAGAGGCAGGGGCTGAGGCTGAGACCA
CGGCCGAAGACATTCGGTTATCCGGTCCGTGGGCGCAAGCTGTCTGCCCC
GGCTTGTTGGGGCAACTGCAAATGTTCGAACGTTCGCCTCGGCATAAATC
GTGAGAGACCGTATTTCGCGCCAGACACGCCCCGATCGCGCGTTCATCTC
CGCGCCCGTGTTGCCCTTCGGCGTGCCAGCGCTGCTTTCCCCAGCCCCGC
GCTCAAATCCCTTTGCCTCCCCCGCGGAACTTGAAACTTTAGTCATGGGG
TTGCCGGCGCCATCGCCTCTCCTTCGCCCTCCCTCTTCGGCACGTGAACC
TCTTTGGGCTTAGCCGGACTTTCCAAATGCATGTGGGGCTTTTTTCAGGA
CGGGGTGAAAAGCAAGCGCGGTATCTGCAGACACGGAGGAATTCCTCTGC
CAAGACGGGGGGCAGAAGCGCGAAACGCAAGCAATGAAGGGCAGCTTCCC
TGTCTCCCAAAGGACGGACTCCGGGGTGTACCCCGGCACCGTGATCTGAG
CAGCTTATTCATCGACGCTCGGCGCTAGGGAGTTGGTTCACCATCGGCGG
CGCGCGTGCGGTGGGTTTGGCACTGTACTGTACTGTACGGTAGCAACTGA
AGCTGTCTTTCAGGAAACAGGGGAAACATGTGAGGCATGCGAACATGCAA
ACATGCGACGGCGTTTCCAAACTGGACTGGACTGGACTGGGGTCCACCGA
TGAAACAAACGCCTCGAGAAGAAAGACCCTCACATGCCTTCATGCCCACG
AAAACCACAATCATTTCGATGCCATTAGAATACCCTGCTCATTAGTCTGT
TGATTCCCGCGCTGTTTGGATCGACGCGGCGTGCCACCCTCCGGACGAAC
TGTGGTTTGCAGGCGAGACACCGTATCAGTTCCCTTTCCCAATCAACTAG
AGTCAGCCGGAGGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig92:119030..123993+

>mRNA_D-dichotoma_M_contig92.19927.1 ID=mRNA_D-dichotoma_M_contig92.19927.1|Name=mRNA_D-dichotoma_M_contig92.19927.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=660bp|location=Sequence derived from alignment at D-dichotoma_M_contig92:119030..123993+ (Dictyota dichotoma ODC1387m male)
GGTGATGAAGCCTTGGTGCTTGCAGCAGAGGCGGCAAACGAGCGCTTGTG
TCCGCTTGCTAGTAACTCCGTCTTGGCGGTAGTGAAGACGGTGTTGGCGT
GCGTCAAGCGAGAGATGCTAGACACCTCGTGGGGGCGCCGTTTGGTATCC
GTGGCACCGTCCAGCCCACCTGACGCGGCTGTTGTGGGAGCTCTAGCAAT
CCTGGCGGCGATTCGAGAGGACCCAGTGGGAGCCGACCTCGCCCTTGCAT
TGCTGAGCATGGCTGTATCGTCCTACAGGGTGATGAAGCCTTGGTGCTTG
CAGCAGAGGCGGCAAACGAGCGCTTGTGTCCGCTTGCTAGTAACTCCGTC
TTGGCGGTAGTGAAGACGGTGTTGGCGTGCGTCAAGCGAGAGATGCTAGA
CACCTCGTGGGGGCGCCGTTTGGTATCCGTGGCACCGTCCAGCCCACCTG
ACGCGGCTGTTGTGGGAGCTCTAGCAATCCTGGCGGCGATTCGAGAGGAC
CCAGTGGGAGCCGACCTCGCCCTTGCATTGCTGAGCATGGCTGTATCGTC
CTACAGGCGAGACACCGTATCAGTTCCCTTTCCCAATCAACTAGAGTCAG
CCGGAGGGGCGAGACACCGTATCAGTTCCCTTTCCCAATCAACTAGAGTC
AGCCGGAGGG
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