mRNA_D-dichotoma_M_contig917.19904.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig917.19904.1
Unique NamemRNA_D-dichotoma_M_contig917.19904.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig917.19904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig917contigD-dichotoma_M_contig917:218503..218941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931144.8965075-CDS-D-dichotoma_M_contig917:218502..2189401622931144.8965075-CDS-D-dichotoma_M_contig917:218502..218940Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig917 218503..218940 +
1690799634.6460338-CDS-D-dichotoma_M_contig917:218502..2189401690799634.6460338-CDS-D-dichotoma_M_contig917:218502..218940Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig917 218503..218940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig917.19904.1prot_D-dichotoma_M_contig917.19904.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig917 218503..218940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig917.19904.1

>prot_D-dichotoma_M_contig917.19904.1 ID=prot_D-dichotoma_M_contig917.19904.1|Name=mRNA_D-dichotoma_M_contig917.19904.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=146bp
EKEYARAVVAAAVEGTWPKDFQEEVARDVEFEGLQNDPDEVFALMGNLSG
KYEIVGEERLGLKKEKGDNKQARSRSSGRHDQGARGHAGAGRRPPGEDER
RSFHTLECRRCGGRGHHWKECPSDPAVAEVNQARMGTQPEPLSGQE
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mRNA from alignment at D-dichotoma_M_contig917:218503..218941+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig917.19904.1 ID=mRNA_D-dichotoma_M_contig917.19904.1|Name=mRNA_D-dichotoma_M_contig917.19904.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=439bp|location=Sequence derived from alignment at D-dichotoma_M_contig917:218503..218941+ (Dictyota dichotoma ODC1387m male)
GAGAAAGAGTACGCCCGGGCAGTCGTGGCGGCCGCGGTCGAGGGCACGTG
GCCGAAGGACTTCCAGGAGGAGGTCGCCCGGGACGTTGAGTTCGAGGGGC
TGCAAAATGACCCTGATGAAGTGTTTGCGCTGATGGGGAACCTAAGCGGG
AAGTATGAGATAGTGGGGGAGGAGAGATTGGGATTAAAGAAAGAGAAAGG
TGACAATAAACAGGCGCGTAGCAGGAGCTCCGGACGTCATGACCAGGGAG
CTCGAGGGCATGCAGGGGCGGGACGGAGACCGCCGGGCGAGGATGAGCGG
AGGTCTTTTCATACGCTGGAGTGTCGGCGATGCGGAGGGAGAGGACACCA
TTGGAAAGAATGCCCGTCGGATCCCGCAGTAGCTGAGGTAAATCAGGCTC
GAATGGGGACCCAGCCTGAGCCGCTAAGCGGACAGGAGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig917:218503..218941+

>mRNA_D-dichotoma_M_contig917.19904.1 ID=mRNA_D-dichotoma_M_contig917.19904.1|Name=mRNA_D-dichotoma_M_contig917.19904.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=876bp|location=Sequence derived from alignment at D-dichotoma_M_contig917:218503..218941+ (Dictyota dichotoma ODC1387m male)
GAGAAAGAGTACGCCCGGGCAGTCGTGGCGGCCGCGGTCGAGGGCACGTG
GCCGAAGGACTTCCAGGAGGAGGTCGCCCGGGACGTTGAGTTCGAGGGGC
TGCAAAATGACCCTGATGAAGTGTTTGCGCTGATGGGGAACCTAAGCGGG
AAGTATGAGATAGTGGGGGAGGAGAGATTGGGATTAAAGAAAGAGAAAGG
TGACAATAAACAGGCGCGTAGCAGGAGCTCCGGACGTCATGACCAGGGAG
CTCGAGGGCATGCAGGGGCGGGACGGAGACCGCCGGGCGAGGATGAGCGG
AGGTCTTTTCATACGCTGGAGTGTCGGCGATGCGGAGGGAGAGGACACCA
TTGGAAAGAATGCCCGTCGGATCCCGCAGTAGCTGAGGTAAATCAGGCTC
GAATGGGGACCCAGCCTGAGCCGCTAAGCGGACAGGAGGAGAAAGAGTAC
GCCCGGGCAGTCGTGGCGGCCGCGGTCGAGGGCACGTGGCCGAAGGACTT
CCAGGAGGAGGTCGCCCGGGACGTTGAGTTCGAGGGGCTGCAAAATGACC
CTGATGAAGTGTTTGCGCTGATGGGGAACCTAAGCGGGAAGTATGAGATA
GTGGGGGAGGAGAGATTGGGATTAAAGAAAGAGAAAGGTGACAATAAACA
GGCGCGTAGCAGGAGCTCCGGACGTCATGACCAGGGAGCTCGAGGGCATG
CAGGGGCGGGACGGAGACCGCCGGGCGAGGATGAGCGGAGGTCTTTTCAT
ACGCTGGAGTGTCGGCGATGCGGAGGGAGAGGACACCATTGGAAAGAATG
CCCGTCGGATCCCGCAGTAGCTGAGGTAAATCAGGCTCGAATGGGGACCC
AGCCTGAGCCGCTAAGCGGACAGGAG
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