mRNA_D-dichotoma_M_contig917.19901.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig917.19901.1
Unique NamemRNA_D-dichotoma_M_contig917.19901.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig917.19901.1 vs. uniprot
Match: D7G471_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G471_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 2.000e-31
Identity = 79/185 (42.70%), Postives = 105/185 (56.76%), Query Frame = 1 
Query:   70 PPPAGIVYDHGQGSVAACVTEDSATVAPDSISKFTDS--------ILHVDHDTHHHQDDPRGVSLGVTKGKEGDHFTTFLRQSCAGSDVDRLKIELAETIYRTSKREPLGRAYQRDQKLPNQVKNSRLKFGTSSDKSEAVKTLLCP-TSEFETQSDDNNLRAGEQSRRDYRWNIEIGSHRFGCKG 597
            PP AGIVYD  +G VA+CV E      P++I K+  S        +LH          DP+ +S G    K  DH      Q  A +DV+RLK+ LAE++YR++KREPLG+ YQR  +LP +VK+    FG SSDKSEA K+LL P  S  + +        GEQ RR Y W+++I +HRFG  G
Sbjct:    3 PPRAGIVYDRNEGGVASCVREVQRPGTPEAIRKWRRSGTSPPGQRVLHPGQIGDAQDVDPK-ISFGSGGVKASDHVGDIWLQPGADTDVNRLKLALAESVYRSTKREPLGKGYQRGHQLPPKVKSDAFTFGVSSDKSEAAKSLLYPHPSAVDMEESGARCGPGEQRRRGYIWDVDIENHRFGRPG 186
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig917.19901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G471_ECTSI2.000e-3142.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig917contigD-dichotoma_M_contig917:124940..126123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue2.4e-27
Seed eggNOG ortholog2880.D7G471
Preferred nameEFHB
EggNOG OGs2CJU2@1,2QV2M@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_001500.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size606
Cds size582
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig917.19901.1prot_D-dichotoma_M_contig917.19901.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig917 124940..126099 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.3458269-CDS-D-dichotoma_M_contig917:124939..1250411622931145.3458269-CDS-D-dichotoma_M_contig917:124939..125041Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig917 124940..125041 -
1690799634.758596-CDS-D-dichotoma_M_contig917:124939..1250411690799634.758596-CDS-D-dichotoma_M_contig917:124939..125041Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig917 124940..125041 -
1622931145.3628716-CDS-D-dichotoma_M_contig917:125172..1252651622931145.3628716-CDS-D-dichotoma_M_contig917:125172..125265Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig917 125173..125265 -
1690799634.7688737-CDS-D-dichotoma_M_contig917:125172..1252651690799634.7688737-CDS-D-dichotoma_M_contig917:125172..125265Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig917 125173..125265 -
1622931145.3793375-CDS-D-dichotoma_M_contig917:125409..1255291622931145.3793375-CDS-D-dichotoma_M_contig917:125409..125529Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig917 125410..125529 -
1690799634.778537-CDS-D-dichotoma_M_contig917:125409..1255291690799634.778537-CDS-D-dichotoma_M_contig917:125409..125529Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig917 125410..125529 -
1622931145.3931804-CDS-D-dichotoma_M_contig917:125832..1260991622931145.3931804-CDS-D-dichotoma_M_contig917:125832..126099Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig917 125833..126099 -
1690799634.7880914-CDS-D-dichotoma_M_contig917:125832..1260991690799634.7880914-CDS-D-dichotoma_M_contig917:125832..126099Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig917 125833..126099 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.436154-UTR-D-dichotoma_M_contig917:126099..1261231622931145.436154-UTR-D-dichotoma_M_contig917:126099..126123Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig917 126100..126123 -
1690799634.7996736-UTR-D-dichotoma_M_contig917:126099..1261231690799634.7996736-UTR-D-dichotoma_M_contig917:126099..126123Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig917 126100..126123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig917.19901.1

>prot_D-dichotoma_M_contig917.19901.1 ID=prot_D-dichotoma_M_contig917.19901.1|Name=mRNA_D-dichotoma_M_contig917.19901.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=194bp
MIPQEIEFPSVVTAAPPPAGIVYDHGQGSVAACVTEDSATVAPDSISKFT
DSILHVDHDTHHHQDDPRGVSLGVTKGKEGDHFTTFLRQSCAGSDVDRLK
IELAETIYRTSKREPLGRAYQRDQKLPNQVKNSRLKFGTSSDKSEAVKTL
LCPTSEFETQSDDNNLRAGEQSRRDYRWNIEIGSHRFGCKGERE
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mRNA from alignment at D-dichotoma_M_contig917:124940..126123-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig917.19901.1 ID=mRNA_D-dichotoma_M_contig917.19901.1|Name=mRNA_D-dichotoma_M_contig917.19901.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=1184bp|location=Sequence derived from alignment at D-dichotoma_M_contig917:124940..126123- (Dictyota dichotoma ODC1387m male)
CAACATATCTGGACGGACGTCGAGATGATTCCACAAGAAATAGAATTCCC
ATCCGTAGTAACGGCGGCACCCCCACCTGCGGGGATTGTATACGATCATG
GGCAAGGAAGCGTGGCTGCGTGTGTAACTGAAGATAGCGCAACCGTCGCG
CCCGACTCAATTTCCAAATTCACGGATAGCATTCTCCACGTAGATCATGA
TACTCATCATCACCAAGACGATCCGAGAGGAGTATCCTTGGGTGTCACAA
AAGGAAAAGAAGGCGATCACTTCACGACGTTTTTGCGTCAGGTGTGAGTA
CACCATTAACGACGAATTCACGTGACATAGGGGAATCAATTTGCTTGTGT
GATTCGGTGATTCCTCGGAGACTGGAAATTGGCGCATTACTTCATGTTAG
TCCCACGGCAATTTTGTCATTCCTCGAACATCAGAATTGGATTCAAGACA
TTTAAGTTCGAAGGAAATGTAGTTCATCATGCACAGTAGATAGAGTATCT
TCTTTCGACACCAACGGAATCCGGCGTGGAACGCAGTGTTTCGTCAGTTT
TTTCTTTTTCATGTACGGCAAGAACCTATCATGGCTTTTCCCAGTCGTGC
GCAGGTTCCGACGTGGACCGCCTGAAGATTGAGCTTGCGGAAACTATATA
CCGGACTTCGAAGAGGGAGCCGTTGGGTAGGGCTTATCAACGTGACCAAA
AACTTCCGAACCAGGTGGGAGGATGTTTGTTTCTGCCGTCGCGGGCAAGA
TCTGACCATAGTAAAATGAGGACACCGTGGATCGTGTTACCGGTAAATGA
TTGATGCTACCCTGTGCACTTCGACTTTAAACGGATGTCTTGCATTGGAA
AACTACAGGTGAAGAACAGTAGACTCAAATTTGGAACATCCTCTGACAAG
AGTGAGGCAGTGAAGACCCTGCTATGCCCTACATCTGAGTTTGAAACCCA
GGTGAGGTAATTCGCCAGTATTTGTATCCCCGCAACCTCAGAGGCGTTGA
TCTTTCAATCCTCCCGTCAAATCCCCACCCAGACGTGCCGGCCGGTCCCC
TTCCTTGGTTTCACGTCTTTTTGTTTTGCTAGAGTGATGACAACAACCTA
CGGGCGGGAGAGCAAAGTCGCAGGGACTATAGATGGAACATCGAGATTGG
AAGTCATAGGTTTGGATGCAAAGGAGAACGTGAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig917:124940..126123-

>mRNA_D-dichotoma_M_contig917.19901.1 ID=mRNA_D-dichotoma_M_contig917.19901.1|Name=mRNA_D-dichotoma_M_contig917.19901.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1164bp|location=Sequence derived from alignment at D-dichotoma_M_contig917:124940..126123- (Dictyota dichotoma ODC1387m male)
ATGATTCCACAAGAAATAGAATTCCCATCCGTAGTAACGGCGGCACCCCC
ACCTGCGGGGATTGTATACGATCATGGGCAAGGAAGCGTGGCTGCGTGTG
TAACTGAAGATAGCGCAACCGTCGCGCCCGACTCAATTTCCAAATTCACG
GATAGCATTCTCCACGTAGATCATGATACTCATCATCACCAAGACGATCC
GAGAGGAGTATCCTTGGGTGTCACAAAAGGAAAAGAAGGCGATCACTTCA
CGACGTTTTTGCGTCAGATGATTCCACAAGAAATAGAATTCCCATCCGTA
GTAACGGCGGCACCCCCACCTGCGGGGATTGTATACGATCATGGGCAAGG
AAGCGTGGCTGCGTGTGTAACTGAAGATAGCGCAACCGTCGCGCCCGACT
CAATTTCCAAATTCACGGATAGCATTCTCCACGTAGATCATGATACTCAT
CATCACCAAGACGATCCGAGAGGAGTATCCTTGGGTGTCACAAAAGGAAA
AGAAGGCGATCACTTCACGACGTTTTTGCGTCAGTCGTGCGCAGGTTCCG
ACGTGGACCGCCTGAAGATTGAGCTTGCGGAAACTATATACCGGACTTCG
AAGAGGGAGCCGTTGGGTAGGGCTTATCAACGTGACCAAAAACTTCCGAA
CCAGTCGTGCGCAGGTTCCGACGTGGACCGCCTGAAGATTGAGCTTGCGG
AAACTATATACCGGACTTCGAAGAGGGAGCCGTTGGGTAGGGCTTATCAA
CGTGACCAAAAACTTCCGAACCAGGTGAAGAACAGTAGACTCAAATTTGG
AACATCCTCTGACAAGAGTGAGGCAGTGAAGACCCTGCTATGCCCTACAT
CTGAGTTTGAAACCCAGGTGAAGAACAGTAGACTCAAATTTGGAACATCC
TCTGACAAGAGTGAGGCAGTGAAGACCCTGCTATGCCCTACATCTGAGTT
TGAAACCCAGAGTGATGACAACAACCTACGGGCGGGAGAGCAAAGTCGCA
GGGACTATAGATGGAACATCGAGATTGGAAGTCATAGGTTTGGATGCAAA
GGAGAACGTGAGAGTGATGACAACAACCTACGGGCGGGAGAGCAAAGTCG
CAGGGACTATAGATGGAACATCGAGATTGGAAGTCATAGGTTTGGATGCA
AAGGAGAACGTGAG
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