mRNA_D-dichotoma_M_contig915.19898.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig915.19898.1 vs. uniprot
Match: D7FTW0_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW0_ECTSI) HSP 1 Score: 112 bits (279), Expect = 3.810e-24 Identity = 70/216 (32.41%), Postives = 109/216 (50.46%), Query Frame = 1
Query: 256 GSPGAEFFGDHGAWDGHISRALNT-AQGMSRLEKGLSAFRIVFSSVFIALALVSMVLLFQLRNEFDIKARSPYLCMVIGAGALAGMSIVIAISANELFGTDINIFWVVMTYYFFVPAVLCAYGARAIRLAVAFNPRARKAAPQLLSERNHLMVCFFIATCMLIIPLYHARTITGPYREIRFYYETRETMWILQGVFQTGLLVLLPIVRNVDDLFGI 900
G PG + DG I L++ +R +K L+ FR+ FI L ++ ++L+ DI+ RS YL MV G + M + + + ++ T + FW + +F PA+ Y RA+RLAV F+PR ++A P L+ ERN+++V + ML IP+YH T+ G + I + + I V L + P +RNVDDLF I
Sbjct: 17 GGPGTSTSWEQHYGDGDIDLDLSSLVPSYTRTDKALALFRLGVGCCFIVLGTCALARFYRLKQILDIRTRSAYLVMVGGVAGILTMLVTVNDATTVIWDTGFDWFWTSLFLFFISPALFGRYICRALRLAVVFHPRVKRALPWLIPERNYMVVLLVASVGMLAIPIYHEHTL-GVWDAIS---KQTTILKIEARVLAVALACIYPFIRNVDDLFSI 228
BLAST of mRNA_D-dichotoma_M_contig915.19898.1 vs. uniprot
Match: A0A6H5JE98_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE98_9PHAE) HSP 1 Score: 104 bits (259), Expect = 2.650e-21 Identity = 66/202 (32.67%), Postives = 105/202 (51.98%), Query Frame = 1
Query: 298 DGHISRALNT-AQGMSRLEKGLSAFRIVFSSVFIALALVSMVLLFQLRNEFDIKARSPYLCMVIGAGALAGMSIVIAISANELFGTDINIFWVVMTYYFFVPAVLCAYGARAIRLAVAFNPRARKAAPQLLSERNHLMVCFFIATCMLIIPLYHARTITGPYREIRFYYETRETMWILQGVFQTGLLVLLPIVRNVDDLFGI 900
DG I L++ A +R +K L+ R+ FI L ++V ++ + DI+ RS YL MV G + M + + S ++ + FW+ + +F PA+ +Y RA+RLAV F+PR ++A P L+ E N+++V + ML IP+YH T+ G + I + + I V L + P +RNVDDLF I
Sbjct: 31 DGDIDLNLSSLAPSYTRTDKALALVRLGVGCCFIVLGTCALVRFYRSKWILDIRTRSAYLVMVGGVAGILTMLVTVNDSTTVVWDIGFDWFWISLLLFFISPALFGSYICRALRLAVVFHPRVKRALPWLIPEHNYMVVLLVASVGMLAIPIYHEYTL-GVWDAIS---KQTNILKIEARVLAVALACIYPFIRNVDDLFSI 228
BLAST of mRNA_D-dichotoma_M_contig915.19898.1 vs. uniprot
Match: D7G2T7_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2T7_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 4.110e-16 Identity = 52/150 (34.67%), Postives = 85/150 (56.67%), Query Frame = 1
Query: 460 RSPYLCMVIGAGALAGMSIVIAISANELFGTDINIFWVVMTYYFFVPAVLCAYGARAIRLAVAFNPRARKAAPQLLSERNHLMVCFFIATCMLIIPLYHARTITGPYREIRFYYETRETMWILQG-VFQTGLLVLLPIVRNVDDLFGIGR 906
RS +L MV G L M + + S N ++ + ++ FW+ + +F PA+ +Y RA+RLAV F+PRA++A P L+ ERN+++V ++ M+ IP+Y T+ E+ + T+ + VF L + P +RNVDDLF I +
Sbjct: 3 RSAHLVMVEGVCVLLTMVVAVNGSINVVWDSGLDWFWMSLLLFFISPALKGSYICRALRLAVVFHPRAKRALPWLIPERNYMVVLLVVSVGMMAIPIYQEYTL-----EVWEIIPKQTTILTTEALVFAVTLACIYPFIRNVDDLFNISK 147
BLAST of mRNA_D-dichotoma_M_contig915.19898.1 vs. uniprot
Match: A0A6H5LEP9_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEP9_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 6.870e-14 Identity = 50/151 (33.11%), Postives = 82/151 (54.30%), Query Frame = 1
Query: 457 ARSPYLCMVIGAGALAGMSIVIAISANELFGTDINIFWVVMTYYFFVPAVLCAYGARAIRLAVAFNPRARKAAPQLLSERNHLMVCFFIATCMLIIPLYHARTITGPYREIRFYYETRETMWILQG-VFQTGLLVLLPIVRNVDDLFGIGR 906
ARS +L + G L M + + + ++ + ++ FW+ + +F PA+ +Y RA+RLAV FNPRA++A P L+ ERN+L V + +L IP+Y T+ E+ + ++ Q V L+ + P +RNVDDLF I +
Sbjct: 18 ARSAHLVTLQGVSLLFSMLVTVNDATTIVWDSGLDWFWISLLLFFVSPALFGSYICRALRLAVVFNPRAKRALPWLIPERNYLAVLLLASIGILAIPIYQEYTL-----EVWDAIPKQTSILKTQARVLAVMLVCIYPFIRNVDDLFNISK 163
BLAST of mRNA_D-dichotoma_M_contig915.19898.1 vs. uniprot
Match: D7FTW2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW2_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 6.920e-14 Identity = 48/141 (34.04%), Postives = 75/141 (53.19%), Query Frame = 1
Query: 478 MVIGAGALAGMSIVIAISANELFGTDINIFWVVMTYYFFVPAVLCAYGARAIRLAVAFNPRARKAAPQLLSERNHLMVCFFIATCMLIIPLYHARTITGPYREIRFYYETRETMWILQGVFQTGLLVLLPIVRNVDDLFGI 900
MV G + M + + + ++ T + FW + +F PA+ +Y RA+RLAV F+PR ++A P L+ ERN+++V + ML IP+YH T+ G + I + + I V L + P +RNVDDLF I
Sbjct: 1 MVGGVAGILTMLVTVNDATTVIWDTGFDWFWTSLLLFFISPALFGSYICRALRLAVVFHPRVKRALPWLVPERNYMVVLLVSSVGMLAIPIYHEHTL-GVWDAIS---KQTTILKIEARVLAVALACIYPFIRNVDDLFSI 137
BLAST of mRNA_D-dichotoma_M_contig915.19898.1 vs. uniprot
Match: D8LJQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ7_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 8.750e-13 Identity = 46/124 (37.10%), Postives = 71/124 (57.26%), Query Frame = 1
Query: 535 NELFGTDINIFWVVMTYYFFVPAVLCAYGARAIRLAVAFNPRARKAAPQLLSERNHLMVCFFIATCMLIIPLYHARTITGPYREIRFYYETRETMWILQGVFQTGLLVLLPIVRNVDDLFGIGR 906
N ++ + ++ FWV + +F PA+ +Y RA+RLAV F+P+A++A P L+ ERN++ V + ML IPLYH T+ EI +T +W+ F + P +RNVDDLF I +
Sbjct: 10 NIVWDSGLDWFWVSLLLFFVSPALFGSYICRALRLAVVFHPKAKRALPWLIPERNYVAVLMVASCGMLAIPLYHEYTLEV--WEI-IPKQTDILIWV-SIAFAVVQACIYPFIRNVDDLFSISK 129 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig915.19898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig915.19898.1 >prot_D-dichotoma_M_contig915.19898.1 ID=prot_D-dichotoma_M_contig915.19898.1|Name=mRNA_D-dichotoma_M_contig915.19898.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=302bp LALFREEQGRGYILPSSALCSSWIIALVHHPSKLLNQVTSPEVGVTQAVRback to top mRNA from alignment at D-dichotoma_M_contig915:176320..186892- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig915.19898.1 ID=mRNA_D-dichotoma_M_contig915.19898.1|Name=mRNA_D-dichotoma_M_contig915.19898.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=10573bp|location=Sequence derived from alignment at D-dichotoma_M_contig915:176320..186892- (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig915:176320..186892- >mRNA_D-dichotoma_M_contig915.19898.1 ID=mRNA_D-dichotoma_M_contig915.19898.1|Name=mRNA_D-dichotoma_M_contig915.19898.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1812bp|location=Sequence derived from alignment at D-dichotoma_M_contig915:176320..186892- (Dictyota dichotoma ODC1387m male)back to top |