mRNA_D-dichotoma_M_contig9.19756.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig9.19756.1
Unique NamemRNA_D-dichotoma_M_contig9.19756.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig9.19756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig9contigD-dichotoma_M_contig9:1238468..1238917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size450
Cds size345
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931110.8572192-UTR-D-dichotoma_M_contig9:1238467..12385721622931110.8572192-UTR-D-dichotoma_M_contig9:1238467..1238572Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig9 1238468..1238572 +
1690799617.49205-UTR-D-dichotoma_M_contig9:1238467..12385721690799617.49205-UTR-D-dichotoma_M_contig9:1238467..1238572Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig9 1238468..1238572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931110.8726408-CDS-D-dichotoma_M_contig9:1238572..12389171622931110.8726408-CDS-D-dichotoma_M_contig9:1238572..1238917Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig9 1238573..1238917 +
1690799617.5027766-CDS-D-dichotoma_M_contig9:1238572..12389171690799617.5027766-CDS-D-dichotoma_M_contig9:1238572..1238917Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig9 1238573..1238917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig9.19756.1prot_D-dichotoma_M_contig9.19756.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig9 1238573..1238917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig9.19756.1

>prot_D-dichotoma_M_contig9.19756.1 ID=prot_D-dichotoma_M_contig9.19756.1|Name=mRNA_D-dichotoma_M_contig9.19756.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=115bp
MHLGRDRRSGFREHLIWAPKPEQIPQVPCVEHHGDFTWNQVEHSAVTKIH
GRTKLKRMVFNVPSLSPICYSGSNFLWNSTENRGTSKRSTVLPMMTMWIS
RTNPLEFAVYCSSAH
back to top

mRNA from alignment at D-dichotoma_M_contig9:1238468..1238917+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig9.19756.1 ID=mRNA_D-dichotoma_M_contig9.19756.1|Name=mRNA_D-dichotoma_M_contig9.19756.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=450bp|location=Sequence derived from alignment at D-dichotoma_M_contig9:1238468..1238917+ (Dictyota dichotoma ODC1387m male)
GGATGGTACATAAACTACCATACGTTTTCCGTCGAACGGGAGATCTATGG
TTGTTCATGGTCTAGTTGAGAAAAACTATGCCATAAATTGGATCAGAAGG
AGCATATGCACTTAGGCAGAGACCGTAGATCCGGCTTCCGAGAGCATCTA
ATATGGGCTCCAAAACCTGAACAAATCCCTCAGGTTCCTTGTGTGGAACA
TCATGGCGATTTTACATGGAATCAAGTCGAACATAGTGCAGTGACCAAGA
TACATGGGAGAACTAAACTAAAACGTATGGTTTTCAATGTACCAAGCCTG
TCTCCGATATGTTACTCCGGGAGCAATTTCCTTTGGAACAGCACCGAGAA
CAGAGGCACGTCGAAACGCTCGACAGTGCTTCCAATGATGACGATGTGGA
TCTCTCGTACAAACCCACTTGAATTTGCTGTCTACTGCAGTAGTGCTCAC
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig9:1238468..1238917+

>mRNA_D-dichotoma_M_contig9.19756.1 ID=mRNA_D-dichotoma_M_contig9.19756.1|Name=mRNA_D-dichotoma_M_contig9.19756.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=690bp|location=Sequence derived from alignment at D-dichotoma_M_contig9:1238468..1238917+ (Dictyota dichotoma ODC1387m male)
ATGCACTTAGGCAGAGACCGTAGATCCGGCTTCCGAGAGCATCTAATATG
GGCTCCAAAACCTGAACAAATCCCTCAGGTTCCTTGTGTGGAACATCATG
GCGATTTTACATGGAATCAAGTCGAACATAGTGCAGTGACCAAGATACAT
GGGAGAACTAAACTAAAACGTATGGTTTTCAATGTACCAAGCCTGTCTCC
GATATGTTACTCCGGGAGCAATTTCCTTTGGAACAGCACCGAGAACAGAG
GCACGTCGAAACGCTCGACAGTGCTTCCAATGATGACGATGTGGATCTCT
CGTACAAACCCACTTGAATTTGCTGTCTACTGCAGTAGTGCTCACATGCA
CTTAGGCAGAGACCGTAGATCCGGCTTCCGAGAGCATCTAATATGGGCTC
CAAAACCTGAACAAATCCCTCAGGTTCCTTGTGTGGAACATCATGGCGAT
TTTACATGGAATCAAGTCGAACATAGTGCAGTGACCAAGATACATGGGAG
AACTAAACTAAAACGTATGGTTTTCAATGTACCAAGCCTGTCTCCGATAT
GTTACTCCGGGAGCAATTTCCTTTGGAACAGCACCGAGAACAGAGGCACG
TCGAAACGCTCGACAGTGCTTCCAATGATGACGATGTGGATCTCTCGTAC
AAACCCACTTGAATTTGCTGTCTACTGCAGTAGTGCTCAC
back to top