mRNA_D-dichotoma_M_contig9.19748.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig9.19748.1
Unique NamemRNA_D-dichotoma_M_contig9.19748.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig9.19748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig9contigD-dichotoma_M_contig9:932942..935287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue6.2e-10
Seed eggNOG ortholog159749.K0SC86
KEGG koko:K15031,ko:K15032
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-09_000990.1
Exons2
Model size1583
Cds size1371
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig9.19748.1prot_D-dichotoma_M_contig9.19748.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig9 932961..934331 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931110.7569718-UTR-D-dichotoma_M_contig9:932941..9329601622931110.7569718-UTR-D-dichotoma_M_contig9:932941..932960Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig9 932942..932960 -
1690799617.4372036-UTR-D-dichotoma_M_contig9:932941..9329601690799617.4372036-UTR-D-dichotoma_M_contig9:932941..932960Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig9 932942..932960 -
1622931110.7880263-UTR-D-dichotoma_M_contig9:934331..9344941622931110.7880263-UTR-D-dichotoma_M_contig9:934331..934494Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig9 934332..934494 -
1690799617.4653492-UTR-D-dichotoma_M_contig9:934331..9344941690799617.4653492-UTR-D-dichotoma_M_contig9:934331..934494Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig9 934332..934494 -
1622931110.8071334-UTR-D-dichotoma_M_contig9:935257..9352871622931110.8071334-UTR-D-dichotoma_M_contig9:935257..935287Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig9 935258..935287 -
1690799617.4778302-UTR-D-dichotoma_M_contig9:935257..9352871690799617.4778302-UTR-D-dichotoma_M_contig9:935257..935287Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig9 935258..935287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931110.77169-CDS-D-dichotoma_M_contig9:932960..9343311622931110.77169-CDS-D-dichotoma_M_contig9:932960..934331Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig9 932961..934331 -
1690799617.452901-CDS-D-dichotoma_M_contig9:932960..9343311690799617.452901-CDS-D-dichotoma_M_contig9:932960..934331Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig9 932961..934331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig9.19748.1

>prot_D-dichotoma_M_contig9.19748.1 ID=prot_D-dichotoma_M_contig9.19748.1|Name=mRNA_D-dichotoma_M_contig9.19748.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=457bp
MFLRGNSIHVAARCVDGIVSLRAGHACHLRRFCTGSWASSEGNGFRETPT
ADDTRSGTSKRNRRKRIDAPLKPPVQRFQPFGRPGGEGRAVAGAVIGGLG
GHGSHGRRDSTSPNSGDNVRWLQENVVLNQYTAEGMLEREKRIGCLSMDE
LNQRLRWFRDRVGLSEDTTRKILVKRPSLLCKGVEDTLEPLAQWLLDEFD
LEDEGLPTMLTSVPNILQCSIEGMTTKINWLAQRVGFSHAEAVQVVKACP
FVLTNGIDSALAPRLQWIVENLALSEGDELRTWILANPRMVGHGIWSTLA
PTMQFLEETVGLDREKARKFLVRNSLYFNSTSWLHHDYAAKQIWFRTNLG
IHSGEEISKLLRREPRLLNRTSSRLSSLLEFLVEELGATKEEVNAAVMRD
PWLLLTGIQTFWVPRVAALRNAGAEVSFKTQRMTLLTSRKDFDAHVEALS
ATTAFR*
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mRNA from alignment at D-dichotoma_M_contig9:932942..935287-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig9.19748.1 ID=mRNA_D-dichotoma_M_contig9.19748.1|Name=mRNA_D-dichotoma_M_contig9.19748.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2346bp|location=Sequence derived from alignment at D-dichotoma_M_contig9:932942..935287- (Dictyota dichotoma ODC1387m male)
CTTTGAAGCGAGTACACTGAGGTCACAGATGTAAGTGTTGGGTAGCAGTT
TCATGTTACCGTAGAGAGTTCCGTCAAGTCTAGCGCCAAGCTCTGGGGTT
CTAGCCCGCTATCACGTAGTGGACAGAAATACTTTGCCCTCTTGTGGTAC
AGTACCTGCATGGACATCGATTATACTAGTGGAAGAGTAGAGCTATCACA
GCAAGTTTGGAACATAGCACCACGCTTTGCCATGTACCTTCGTGCGGTCG
CCGAACCCGATCATGTGAAACAGTAAGTCAACTGAAGCTGCCATCTCGTT
TATCCATACCCGCCCACTTGTTGAAGGATTCTGCTGATGTCCAATGCAAT
CCATCTCTATTTACCATGGCAACAGGAACCTTGACGTGATGATGCGCTCC
GATCGACTCTCGACCATTACCACGTACAACACTATAATCTATAGCATCAG
GCAGCGTGACTCGTGACCTACATCGCAATGGTATCGTGTTTTTTCCTTGA
CTGTACCGTACTTCCTGATTTTATCACTGTCTCTCGGGTGATATTGTCCT
CTTTTATCATCACTGACACTCTTGTATGTGACTCTAAATGTACGAAGTGA
AACCCAGGTACACAGTCAACGACGGATTCAGACTCATCGGTGGGTCGAGA
GAGTGAACTTCCTTCTCGTATTTCCTTATGACGCCCTTGCTACAGCACAT
GGACTAAACGCATGCATTAGCAAGTAGTCCCGCCTTGGTCCCTGACGCTT
CGCGGTGATGCTCTCGTTAATCTATGTACCCTCATATCAACAGGTTTTAA
TGACCGTGCTCGTGTCGGGGCGTGAGTCCAGCTGCCTCCTAACGACTCAA
AGCTGTCGAGCTCCTGAGGGAAAGAGGGCAAGGACACAACTTGGAAGAGT
TGAAGAGCTCGTGACCGACCAGACGTCGGGCACGTGTTGCAAGATCTCGT
CCCACCATGTTTCTGCGGGGCAATAGTATCCACGTCGCCGCGAGATGTGT
CGACGGCATAGTCAGTCTTCGCGCTGGCCATGCGTGCCACCTGAGGCGGT
TTTGCACAGGATCGTGGGCTTCGAGCGAAGGAAACGGTTTCAGGGAGACG
CCGACAGCAGATGACACAAGATCGGGGACCTCGAAGCGGAATAGGCGGAA
GCGGATCGACGCACCGTTGAAACCCCCTGTGCAGCGATTTCAGCCATTCG
GTCGCCCTGGTGGAGAAGGAAGAGCGGTTGCGGGAGCGGTCATCGGCGGG
TTGGGTGGTCATGGCTCCCACGGGAGGAGAGACTCCACGAGTCCGAACAG
CGGAGATAATGTGCGCTGGCTCCAGGAAAACGTGGTCCTAAACCAGTACA
CAGCTGAGGGGATGCTGGAACGCGAGAAGAGAATCGGTTGTCTGAGTATG
GATGAGCTGAACCAGCGGTTGCGTTGGTTCAGGGATCGGGTGGGTCTTAG
CGAAGACACGACGAGGAAGATCCTCGTGAAGAGACCGTCTTTGCTTTGCA
AGGGCGTCGAGGACACCCTGGAGCCCCTGGCGCAATGGCTGCTGGACGAG
TTCGACCTGGAGGACGAGGGCCTGCCCACGATGCTGACCTCCGTGCCGAA
CATCCTGCAATGCAGCATCGAGGGAATGACGACGAAGATTAACTGGCTCG
CGCAACGCGTCGGCTTCAGCCACGCCGAGGCGGTGCAAGTGGTGAAGGCC
TGCCCGTTTGTGCTGACCAATGGAATCGATTCGGCCCTCGCGCCAAGGCT
GCAGTGGATCGTCGAGAATCTCGCCCTGAGCGAAGGGGACGAACTCCGAA
CGTGGATCCTCGCTAACCCAAGAATGGTTGGGCACGGCATCTGGAGTACC
CTGGCTCCCACGATGCAATTCTTGGAAGAAACGGTCGGTCTCGATCGGGA
AAAGGCGAGGAAGTTTCTCGTCCGCAACTCGCTCTACTTCAACTCGACGA
GTTGGCTCCATCACGATTATGCCGCCAAGCAGATTTGGTTCCGCACGAAC
CTTGGGATACACAGTGGAGAGGAAATCTCCAAGCTTCTGAGACGTGAGCC
GCGTTTGCTCAATCGTACCAGCTCCCGCCTTTCGAGTCTGTTGGAGTTCT
TGGTGGAGGAACTCGGGGCGACGAAGGAGGAAGTCAACGCCGCGGTCATG
AGGGACCCGTGGCTGTTGCTTACCGGCATTCAGACATTCTGGGTGCCCCG
TGTCGCGGCCCTCAGGAACGCCGGGGCGGAGGTTTCGTTCAAAACCCAAC
GGATGACGCTCCTGACGAGCCGAAAGGATTTTGATGCCCACGTAGAGGCG
TTGTCAGCAACCACCGCGTTCCGTTAATGCCTAACTGTGCTCACTC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig9:932942..935287-

>mRNA_D-dichotoma_M_contig9.19748.1 ID=mRNA_D-dichotoma_M_contig9.19748.1|Name=mRNA_D-dichotoma_M_contig9.19748.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=2742bp|location=Sequence derived from alignment at D-dichotoma_M_contig9:932942..935287- (Dictyota dichotoma ODC1387m male)
ATGTTTCTGCGGGGCAATAGTATCCACGTCGCCGCGAGATGTGTCGACGG
CATAGTCAGTCTTCGCGCTGGCCATGCGTGCCACCTGAGGCGGTTTTGCA
CAGGATCGTGGGCTTCGAGCGAAGGAAACGGTTTCAGGGAGACGCCGACA
GCAGATGACACAAGATCGGGGACCTCGAAGCGGAATAGGCGGAAGCGGAT
CGACGCACCGTTGAAACCCCCTGTGCAGCGATTTCAGCCATTCGGTCGCC
CTGGTGGAGAAGGAAGAGCGGTTGCGGGAGCGGTCATCGGCGGGTTGGGT
GGTCATGGCTCCCACGGGAGGAGAGACTCCACGAGTCCGAACAGCGGAGA
TAATGTGCGCTGGCTCCAGGAAAACGTGGTCCTAAACCAGTACACAGCTG
AGGGGATGCTGGAACGCGAGAAGAGAATCGGTTGTCTGAGTATGGATGAG
CTGAACCAGCGGTTGCGTTGGTTCAGGGATCGGGTGGGTCTTAGCGAAGA
CACGACGAGGAAGATCCTCGTGAAGAGACCGTCTTTGCTTTGCAAGGGCG
TCGAGGACACCCTGGAGCCCCTGGCGCAATGGCTGCTGGACGAGTTCGAC
CTGGAGGACGAGGGCCTGCCCACGATGCTGACCTCCGTGCCGAACATCCT
GCAATGCAGCATCGAGGGAATGACGACGAAGATTAACTGGCTCGCGCAAC
GCGTCGGCTTCAGCCACGCCGAGGCGGTGCAAGTGGTGAAGGCCTGCCCG
TTTGTGCTGACCAATGGAATCGATTCGGCCCTCGCGCCAAGGCTGCAGTG
GATCGTCGAGAATCTCGCCCTGAGCGAAGGGGACGAACTCCGAACGTGGA
TCCTCGCTAACCCAAGAATGGTTGGGCACGGCATCTGGAGTACCCTGGCT
CCCACGATGCAATTCTTGGAAGAAACGGTCGGTCTCGATCGGGAAAAGGC
GAGGAAGTTTCTCGTCCGCAACTCGCTCTACTTCAACTCGACGAGTTGGC
TCCATCACGATTATGCCGCCAAGCAGATTTGGTTCCGCACGAACCTTGGG
ATACACAGTGGAGAGGAAATCTCCAAGCTTCTGAGACGTGAGCCGCGTTT
GCTCAATCGTACCAGCTCCCGCCTTTCGAGTCTGTTGGAGTTCTTGGTGG
AGGAACTCGGGGCGACGAAGGAGGAAGTCAACGCCGCGGTCATGAGGGAC
CCGTGGCTGTTGCTTACCGGCATTCAGACATTCTGGGTGCCCCGTGTCGC
GGCCCTCAGGAACGCCGGGGCGGAGGTTTCGTTCAAAACCCAACGGATGA
CGCTCCTGACGAGCCGAAAGGATTTTGATGCCCACGTAGAGGCGTTGTCA
GCAACCACCGCGTTCCGTTAAATGTTTCTGCGGGGCAATAGTATCCACGT
CGCCGCGAGATGTGTCGACGGCATAGTCAGTCTTCGCGCTGGCCATGCGT
GCCACCTGAGGCGGTTTTGCACAGGATCGTGGGCTTCGAGCGAAGGAAAC
GGTTTCAGGGAGACGCCGACAGCAGATGACACAAGATCGGGGACCTCGAA
GCGGAATAGGCGGAAGCGGATCGACGCACCGTTGAAACCCCCTGTGCAGC
GATTTCAGCCATTCGGTCGCCCTGGTGGAGAAGGAAGAGCGGTTGCGGGA
GCGGTCATCGGCGGGTTGGGTGGTCATGGCTCCCACGGGAGGAGAGACTC
CACGAGTCCGAACAGCGGAGATAATGTGCGCTGGCTCCAGGAAAACGTGG
TCCTAAACCAGTACACAGCTGAGGGGATGCTGGAACGCGAGAAGAGAATC
GGTTGTCTGAGTATGGATGAGCTGAACCAGCGGTTGCGTTGGTTCAGGGA
TCGGGTGGGTCTTAGCGAAGACACGACGAGGAAGATCCTCGTGAAGAGAC
CGTCTTTGCTTTGCAAGGGCGTCGAGGACACCCTGGAGCCCCTGGCGCAA
TGGCTGCTGGACGAGTTCGACCTGGAGGACGAGGGCCTGCCCACGATGCT
GACCTCCGTGCCGAACATCCTGCAATGCAGCATCGAGGGAATGACGACGA
AGATTAACTGGCTCGCGCAACGCGTCGGCTTCAGCCACGCCGAGGCGGTG
CAAGTGGTGAAGGCCTGCCCGTTTGTGCTGACCAATGGAATCGATTCGGC
CCTCGCGCCAAGGCTGCAGTGGATCGTCGAGAATCTCGCCCTGAGCGAAG
GGGACGAACTCCGAACGTGGATCCTCGCTAACCCAAGAATGGTTGGGCAC
GGCATCTGGAGTACCCTGGCTCCCACGATGCAATTCTTGGAAGAAACGGT
CGGTCTCGATCGGGAAAAGGCGAGGAAGTTTCTCGTCCGCAACTCGCTCT
ACTTCAACTCGACGAGTTGGCTCCATCACGATTATGCCGCCAAGCAGATT
TGGTTCCGCACGAACCTTGGGATACACAGTGGAGAGGAAATCTCCAAGCT
TCTGAGACGTGAGCCGCGTTTGCTCAATCGTACCAGCTCCCGCCTTTCGA
GTCTGTTGGAGTTCTTGGTGGAGGAACTCGGGGCGACGAAGGAGGAAGTC
AACGCCGCGGTCATGAGGGACCCGTGGCTGTTGCTTACCGGCATTCAGAC
ATTCTGGGTGCCCCGTGTCGCGGCCCTCAGGAACGCCGGGGCGGAGGTTT
CGTTCAAAACCCAACGGATGACGCTCCTGACGAGCCGAAAGGATTTTGAT
GCCCACGTAGAGGCGTTGTCAGCAACCACCGCGTTCCGTTAA
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