mRNA_D-dichotoma_M_contig9.19740.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig9.19740.1
Unique NamemRNA_D-dichotoma_M_contig9.19740.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig9.19740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig9contigD-dichotoma_M_contig9:164046..166819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size542
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig9.19740.1prot_D-dichotoma_M_contig9.19740.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig9 164046..164710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931110.5554826-CDS-D-dichotoma_M_contig9:164045..1643141622931110.5554826-CDS-D-dichotoma_M_contig9:164045..164314Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig9 164046..164314 -
1690799617.3306975-CDS-D-dichotoma_M_contig9:164045..1643141690799617.3306975-CDS-D-dichotoma_M_contig9:164045..164314Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig9 164046..164314 -
1622931110.5694196-CDS-D-dichotoma_M_contig9:164682..1647101622931110.5694196-CDS-D-dichotoma_M_contig9:164682..164710Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig9 164683..164710 -
1690799617.3428528-CDS-D-dichotoma_M_contig9:164682..1647101690799617.3428528-CDS-D-dichotoma_M_contig9:164682..164710Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig9 164683..164710 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931110.5806615-UTR-D-dichotoma_M_contig9:164710..1648081622931110.5806615-UTR-D-dichotoma_M_contig9:164710..164808Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig9 164711..164808 -
1690799617.3555977-UTR-D-dichotoma_M_contig9:164710..1648081690799617.3555977-UTR-D-dichotoma_M_contig9:164710..164808Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig9 164711..164808 -
1622931110.5911698-UTR-D-dichotoma_M_contig9:166672..1668191622931110.5911698-UTR-D-dichotoma_M_contig9:166672..166819Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig9 166673..166819 -
1690799617.3706594-UTR-D-dichotoma_M_contig9:166672..1668191690799617.3706594-UTR-D-dichotoma_M_contig9:166672..166819Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig9 166673..166819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig9.19740.1

>prot_D-dichotoma_M_contig9.19740.1 ID=prot_D-dichotoma_M_contig9.19740.1|Name=mRNA_D-dichotoma_M_contig9.19740.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=99bp
MAALRTNQPGTSNSSVMDLAWSAVVAGLSSRSIHAESRRKRKVKADRNET
VLSGLQEDSPTAEAWMGMYGQSDTIEEDILGAGTPFVCLYLFGWAFGKH
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mRNA from alignment at D-dichotoma_M_contig9:164046..166819-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig9.19740.1 ID=mRNA_D-dichotoma_M_contig9.19740.1|Name=mRNA_D-dichotoma_M_contig9.19740.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2774bp|location=Sequence derived from alignment at D-dichotoma_M_contig9:164046..166819- (Dictyota dichotoma ODC1387m male)
GGTGCTGGATATATTCCTGGAGTCTTCGGACTCAAAGGTAGAAGAGTAGC
TACAGTACGTACATCACCAGCTACCCAAGGTCATTTAATCACCTCCCGCG
GTCATTTCAAAGCACTCGCGGTCATTTCAAGAGCAGCTGGGGCAGAGGTG
AGCTGAAGAAATTGTCGAACGTTGCTTCCGTTACTCCGCCCTTCCTGTTT
TAAAGGGCCATGTACTTAGAGTACATGGACTCGCAAGGAAGGTGGTATCT
CTGCAGCTGTAAATTTTGGCAAGAGATCTAGTGCTCGTTGTCATTAGAGC
TGGAAATACCTTGGGCAGGTTATGGTGTCCATGCTTGCTCCCAACCGTGC
CAGCCATAGCAACGGCCGATGGCTATTGTGGATCGTGTGCGTGCGAGTAG
CTACCGTAGCGTTTGGTCATGCTCGTCATCTACTACCGACGGTTTTCTAT
CTCTCTAGCTCGTCATCTGCCACGGTTATCTTGTAGTCAAGAATGGATCA
TCGTTTGCAAAAGGAAGCATGGTGTAGACATGTACATACCTATGCGTGGG
CTTTCTGAGCAGTGCAGTATCGGCGCCAACATTTCTGGTGCTGAATCGAG
ATTCTTTTCGTTTTCCTTCCCCTACGAAACATCAAAATAGAGTATATGCA
ATCACAGCCAGGTCCCAGCTGGCGCACTAGCTGAGTCCCTCAGTCGTTGG
ATGAAGTTGGCGTCTATCAATATCTCCCTCATATTGAACAAAGGAATGAC
ATGAGGGCAACTGAAATGCTCGTAACTCGGGCTCCTATTGTCAATATGAT
ATTCGAACTGCTGTAATGTGAACTATTGTGTGGTCTACATCATTGTGAGT
ACAGTACCAATTTTCAGTACAGCCTGGGCAACTGACACGTGGGCCCAATG
CACTCCAAAAGGTGCAAGCGTCAAATCCTGAACTGTCCAAGTTACCGTTG
ACGTGGTGCTCGCAGATGATTGAGGAAATGTACTTTATCCGGCAACCAGG
CTTCTCCAAACTCGAGGTTGAAACATTTCATTGATAAAATGCTGATGAAT
CACCACGGCCGACGGTCCATGTCAACCGGTTTGTCTCTGTCTCATCTCAT
CTCATGTCACCTAATCTCATGTCCTCTCGTCCCACCTGTCTACCTTTTTG
ACACCGTTGAGCAAGTTCGGGTTGATCCCCATTCGCCTGCTATTTGTGTC
AACCATAGCACGTCGGACTTCTATGTGCACGACAAAGCCACTTGAGCCCC
TACCTTTGATTCCGTAAGACCCGTAGTGCACCATTTGGCTTGCACAACAG
AACTTCAAACAACGCACTTTACTAACAAACTGAACCTTTGCTTCATCGAC
TACGACTACTACAGTAGTGTACCTTCTATGTCCCAGTAAGGGCCGTTCCT
AACGGGCCCCTTTTTTCCAAAATTCCTTGGAAATCCAAGGCATTCATGCA
AGCAATCCGCCCATGCAAACCGACTGTAGCTCAAGGGATTTGCATCGCGC
TTGCTTCAATTCATCATCGGCCTCCGTCGCATCAAATGGATTGATAGCAC
CTCAGCGCGGGTCGATTCCATTGCATGCCGTCGCTGTAATGTCGGTTTAC
ATGGACGGATTCCTCGGATGACTAGGTAACCCGTCCATGTAAACCGGCTG
TTTAGTAGCTCAAGGGACTTGCACCGCGCTTGCGTTGATTCATCATCATT
GGCCTCCGTCGCATCCAATGGATTGTCAGCACCTCAGCGCGGGTCGATTC
CATCCCATGCAGTCGCATTACATGAATTGATTACTTGGACGAACGCCTTA
GATTTCCAAGGAATTTGGAAAAAAAAGGGGTTCATTAGGAACGGCCCTTA
TTGGCTTTAAGGGCCATGTTGTTTGAATTCTAATTTAATTTCCCGGTAGA
ATAGAGGAGAGCTTTTCGTATCGTACGCTGCCAGATTCATGCCTGTTTTC
CACCCGCCATACCACGATGCCTCGTTTTTTCCATCGTGTATGTTGTGTTT
CCACGTGTTAGGTGCAAGGTGTTAGACTGCTGCTTGAGACGGCAAACCTC
TAAGGGAAGCGGGGGTGCGAGGTGATTTGATTGGCGGAAGAGAAGGGAAC
GGTGACCCGATGGCGGCCCTGAGGACGAACCAACCAGGTAAACGCACAAA
GATCAGATGGTGAATTCCCCCCCTTCCTCAGCCCGAGTGTTTTCGAGATC
CATTCCCACGGCTGATGAAGCCATAGAGGTAAGCACTGCACGCCCTGGCC
CTGATATCAGGGGACGGTAGCTTTGAGATCGAGTGCTCTTCACGTCCAAG
GGATGCTCACATACTCCACTCTCCTTGACGAAAAGACGAAAACGATTTCC
GTGCCTATTTGGTTCGCCGCAAAAACTGGATCATTCTTCCGGAGGCATCT
TTCCAACGTCAGGAGCTGCTTCTCCAAAGCAGTTCCCATTTTTTCATGAA
GACTTTTCCCCCTGCCATGCCCCGGGGATGGATCGCCCGACCTTTCACGC
CGCAGGTACCTCAAACTCGTCGGTTATGGATTTGGCGTGGAGTGCAGTCG
TAGCCGGACTCTCGAGCCGTTCGATTCACGCCGAATCGAGAAGGAAAAGG
AAAGTTAAAGCGGATCGGAATGAGACGGTCCTCTCGGGCTTGCAGGAGGA
TTCTCCCACGGCAGAAGCTTGGATGGGCATGTACGGACAAAGTGATACCA
TCGAAGAAGATATCCTGGGTGCGGGTACACCCTTTGTATGCCTGTATCTT
TTCGGCTGGGCGTTTGGAAAGCAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig9:164046..166819-

>mRNA_D-dichotoma_M_contig9.19740.1 ID=mRNA_D-dichotoma_M_contig9.19740.1|Name=mRNA_D-dichotoma_M_contig9.19740.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=594bp|location=Sequence derived from alignment at D-dichotoma_M_contig9:164046..166819- (Dictyota dichotoma ODC1387m male)
ATGGCGGCCCTGAGGACGAACCAACCAGATGGCGGCCCTGAGGACGAACC
AACCAGGTACCTCAAACTCGTCGGTTATGGATTTGGCGTGGAGTGCAGTC
GTAGCCGGACTCTCGAGCCGTTCGATTCACGCCGAATCGAGAAGGAAAAG
GAAAGTTAAAGCGGATCGGAATGAGACGGTCCTCTCGGGCTTGCAGGAGG
ATTCTCCCACGGCAGAAGCTTGGATGGGCATGTACGGACAAAGTGATACC
ATCGAAGAAGATATCCTGGGTGCGGGTACACCCTTTGTATGCCTGTATCT
TTTCGGCTGGGCGTTTGGAAAGCACGTACCTCAAACTCGTCGGTTATGGA
TTTGGCGTGGAGTGCAGTCGTAGCCGGACTCTCGAGCCGTTCGATTCACG
CCGAATCGAGAAGGAAAAGGAAAGTTAAAGCGGATCGGAATGAGACGGTC
CTCTCGGGCTTGCAGGAGGATTCTCCCACGGCAGAAGCTTGGATGGGCAT
GTACGGACAAAGTGATACCATCGAAGAAGATATCCTGGGTGCGGGTACAC
CCTTTGTATGCCTGTATCTTTTCGGCTGGGCGTTTGGAAAGCAC
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