mRNA_D-dichotoma_M_contig1112.966.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1112.966.1
Unique NamemRNA_D-dichotoma_M_contig1112.966.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1112.966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1112contigD-dichotoma_M_contig1112:212230..212735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size508
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927625.8063118-CDS-D-dichotoma_M_contig1112:212229..2127331622927625.8063118-CDS-D-dichotoma_M_contig1112:212229..212733Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1112 212230..212733 +
1690798067.7403445-CDS-D-dichotoma_M_contig1112:212229..2127331690798067.7403445-CDS-D-dichotoma_M_contig1112:212229..212733Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1112 212230..212733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1112.966.1prot_D-dichotoma_M_contig1112.966.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1112 212230..212733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1112.966.1

>prot_D-dichotoma_M_contig1112.966.1 ID=prot_D-dichotoma_M_contig1112.966.1|Name=mRNA_D-dichotoma_M_contig1112.966.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=168bp
LRGWSTNPHTCFHCRVEGDVRSQCPLLAGQRRSMVAYAPGFGSSYAASSG
HAPAMADDSAGGRTNGGALALRTRRREGAGPTGQHAMILDVEAEWGEEKD
DAYAPTSAEARAKGQRRHGVDSGRSVPPGPDPWGVRFELPLAVVPVPDDT
PALEDAEDTTGAEDGVQE
back to top

mRNA from alignment at D-dichotoma_M_contig1112:212230..212735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1112.966.1 ID=mRNA_D-dichotoma_M_contig1112.966.1|Name=mRNA_D-dichotoma_M_contig1112.966.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=506bp|location=Sequence derived from alignment at D-dichotoma_M_contig1112:212230..212735+ (Dictyota dichotoma ODC1387m male)
CTCCGGGGGTGGTCGACGAACCCCCATACCTGTTTCCATTGCCGGGTCGA
AGGCGATGTGCGGTCACAGTGCCCACTGCTGGCTGGACAGCGGCGATCAA
TGGTGGCATACGCCCCTGGTTTTGGGTCATCATATGCCGCGTCCTCCGGG
CATGCGCCGGCGATGGCGGACGACTCCGCCGGCGGCAGGACCAACGGAGG
CGCGTTGGCGCTGCGCACTAGGAGAAGGGAGGGCGCGGGACCCACGGGCC
AGCACGCGATGATTCTCGATGTCGAGGCCGAGTGGGGCGAAGAGAAGGAC
GATGCCTATGCACCGACATCCGCGGAAGCACGAGCAAAGGGCCAGCGGAG
ACACGGCGTGGACAGCGGCAGGAGTGTACCACCCGGCCCGGACCCGTGGG
GCGTGAGATTTGAGCTGCCGCTGGCTGTGGTTCCAGTGCCAGACGATACA
CCAGCCCTAGAAGATGCAGAGGACACCACGGGCGCCGAAGATGGGGTTCA
GGAAGG
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig1112:212230..212735+

>mRNA_D-dichotoma_M_contig1112.966.1 ID=mRNA_D-dichotoma_M_contig1112.966.1|Name=mRNA_D-dichotoma_M_contig1112.966.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1008bp|location=Sequence derived from alignment at D-dichotoma_M_contig1112:212230..212735+ (Dictyota dichotoma ODC1387m male)
CTCCGGGGGTGGTCGACGAACCCCCATACCTGTTTCCATTGCCGGGTCGA
AGGCGATGTGCGGTCACAGTGCCCACTGCTGGCTGGACAGCGGCGATCAA
TGGTGGCATACGCCCCTGGTTTTGGGTCATCATATGCCGCGTCCTCCGGG
CATGCGCCGGCGATGGCGGACGACTCCGCCGGCGGCAGGACCAACGGAGG
CGCGTTGGCGCTGCGCACTAGGAGAAGGGAGGGCGCGGGACCCACGGGCC
AGCACGCGATGATTCTCGATGTCGAGGCCGAGTGGGGCGAAGAGAAGGAC
GATGCCTATGCACCGACATCCGCGGAAGCACGAGCAAAGGGCCAGCGGAG
ACACGGCGTGGACAGCGGCAGGAGTGTACCACCCGGCCCGGACCCGTGGG
GCGTGAGATTTGAGCTGCCGCTGGCTGTGGTTCCAGTGCCAGACGATACA
CCAGCCCTAGAAGATGCAGAGGACACCACGGGCGCCGAAGATGGGGTTCA
GGAACTCCGGGGGTGGTCGACGAACCCCCATACCTGTTTCCATTGCCGGG
TCGAAGGCGATGTGCGGTCACAGTGCCCACTGCTGGCTGGACAGCGGCGA
TCAATGGTGGCATACGCCCCTGGTTTTGGGTCATCATATGCCGCGTCCTC
CGGGCATGCGCCGGCGATGGCGGACGACTCCGCCGGCGGCAGGACCAACG
GAGGCGCGTTGGCGCTGCGCACTAGGAGAAGGGAGGGCGCGGGACCCACG
GGCCAGCACGCGATGATTCTCGATGTCGAGGCCGAGTGGGGCGAAGAGAA
GGACGATGCCTATGCACCGACATCCGCGGAAGCACGAGCAAAGGGCCAGC
GGAGACACGGCGTGGACAGCGGCAGGAGTGTACCACCCGGCCCGGACCCG
TGGGGCGTGAGATTTGAGCTGCCGCTGGCTGTGGTTCCAGTGCCAGACGA
TACACCAGCCCTAGAAGATGCAGAGGACACCACGGGCGCCGAAGATGGGG
TTCAGGAA
back to top