mRNA_D-dichotoma_M_contig1110.956.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1110.956.1
Unique NamemRNA_D-dichotoma_M_contig1110.956.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
BLAST of mRNA_D-dichotoma_M_contig1110.956.1 vs. uniprot
Match: A0A6H5L9J7_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9J7_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.720e-25
Identity = 48/53 (90.57%), Postives = 52/53 (98.11%), Query Frame = 1
Query:    1 QVGTPYYTSPEMCNNQPYGFPSDVWSLGVVLFELLALDVPFRSRDVVVLVSQV 159
            +VGTPYYTSPEMCNNQPYGFPSDVWSLG+VL+ELL+LDVPFRSRDVV LVSQV
Sbjct:  268 EVGTPYYTSPEMCNNQPYGFPSDVWSLGIVLYELLSLDVPFRSRDVVALVSQV 320          
BLAST of mRNA_D-dichotoma_M_contig1110.956.1 vs. uniprot
Match: A0A835YLD2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.630e-20
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1
Query:    1 QVGTPYYTSPEMCNNQPYGFPSDVWSLGVVLFELLALDVPFRSRDVVVLVSQV 159
            +VGTPYYTSPEMC+   YG+PSDVWSLGVVL E+LALDVPFR RD V LVS+V
Sbjct:  162 EVGTPYYTSPEMCSGAAYGYPSDVWSLGVVLHEMLALDVPFRGRDTVELVSRV 214          
BLAST of mRNA_D-dichotoma_M_contig1110.956.1 vs. uniprot
Match: A0A836CA11_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA11_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.010e-17
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    1 QVGTPYYTSPEMCNNQPYGFPSDVWSLGVVLFELLALDVPFRSR---DVVVLVSQV 159
            +VGTPYYTSPEM  +QPY FPSDVWSLGV+L+E+LAL+ PFR R   DVV LV++V
Sbjct:  112 EVGTPYYTSPEMVLSQPYSFPSDVWSLGVILYEMLALETPFRLRAHGDVVALVTEV 167          
BLAST of mRNA_D-dichotoma_M_contig1110.956.1 vs. uniprot
Match: F2TW88_SALR5 (NEK protein kinase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TW88_SALR5)

HSP 1 Score: 76.3 bits (186), Expect = 7.140e-15
Identity = 31/53 (58.49%), Postives = 44/53 (83.02%), Query Frame = 1
Query:    1 QVGTPYYTSPEMCNNQPYGFPSDVWSLGVVLFELLALDVPFRSRDVVVLVSQV 159
            Q+GTP+Y SPE+C ++PY F SDVW+LG++LFE+LAL VPF +RD+  LV ++
Sbjct:  170 QIGTPFYLSPEICQDKPYSFSSDVWALGIILFEMLALRVPFEARDLRALVRKI 222          
BLAST of mRNA_D-dichotoma_M_contig1110.956.1 vs. uniprot
Match: A0A813JW79_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JW79_POLGL)

HSP 1 Score: 73.9 bits (180), Expect = 7.380e-15
Identity = 31/52 (59.62%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    4 VGTPYYTSPEMCNNQPYGFPSDVWSLGVVLFELLALDVPFRSRDVVVLVSQV 159
            VGTPYY SPE+C++QPYGF +DVW++GVVL EL+AL+ PF+   +V LV ++
Sbjct:   23 VGTPYYASPEVCDSQPYGFKADVWAMGVVLHELMALEQPFKGPSLVALVLRI 74          
BLAST of mRNA_D-dichotoma_M_contig1110.956.1 vs. uniprot
Match: A0A7S2DLM6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2DLM6_9DINO)

HSP 1 Score: 71.2 bits (173), Expect = 1.460e-14
Identity = 27/53 (50.94%), Postives = 42/53 (79.25%), Query Frame = 1
Query:    1 QVGTPYYTSPEMCNNQPYGFPSDVWSLGVVLFELLALDVPFRSRDVVVLVSQV 159
            Q+GTPYY SPE+C ++PY +PSD+W++G +L EL AL VPF + +++ LV ++
Sbjct:   47 QIGTPYYLSPEVCQDKPYAWPSDIWAMGCILHELCALQVPFNAPNMIALVQKI 99          
BLAST of mRNA_D-dichotoma_M_contig1110.956.1 vs. uniprot
Match: A0A7S1U488_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U488_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.680e-14
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1
Query:    1 QVGTPYYTSPEMCNNQPYGFPSDVWSLGVVLFELLALDVPFRSRDVVVLVSQV 159
            Q+GTPYY SPE+CNNQ YG  SDVWSLG VL+E+L+L  PF ++ +  LVS++
Sbjct:   48 QIGTPYYLSPELCNNQKYGVKSDVWSLGCVLYEMLSLHPPFEAQSLPALVSKI 100          
BLAST of mRNA_D-dichotoma_M_contig1110.956.1 vs. uniprot
Match: G0R6M7_ICHMG (Protein kinase domain protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0R6M7_ICHMG)

HSP 1 Score: 69.7 bits (169), Expect = 3.870e-14
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 1
Query:    1 QVGTPYYTSPEMCNNQPYGFPSDVWSLGVVLFELLALDVPFRSRDVVVLVSQVQ 162
            Q GTPYY+SPE+ NNQPY + SD+WSLG +++E+ AL  PFR  D+  L  ++Q
Sbjct:   30 QAGTPYYSSPEIWNNQPYDYKSDIWSLGCIIYEMCALKPPFRGNDMEELNKKIQ 83          
BLAST of mRNA_D-dichotoma_M_contig1110.956.1 vs. uniprot
Match: A0A7S3UUL5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUL5_HETAK)

HSP 1 Score: 73.2 bits (178), Expect = 4.620e-14
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 1
Query:    1 QVGTPYYTSPEMCNNQPYGFPSDVWSLGVVLFELLALDVPFRS 129
            + GTPYYT+PEM N QPYG PSDVWSLGV L+E LAL +PFR 
Sbjct:  251 EAGTPYYTAPEMVNQQPYGLPSDVWSLGVCLYECLALQLPFRG 293          
BLAST of mRNA_D-dichotoma_M_contig1110.956.1 vs. uniprot
Match: A0A7S3H0A0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H0A0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 6.760e-14
Identity = 29/53 (54.72%), Postives = 44/53 (83.02%), Query Frame = 1
Query:    1 QVGTPYYTSPEMCNNQPYGFPSDVWSLGVVLFELLALDVPFRSRDVVVLVSQV 159
            Q+GTPYY SPE+C ++PYG  SDVWSLGV+L+E++AL++PF++  +  LV ++
Sbjct:  101 QIGTPYYLSPEICESKPYGRESDVWSLGVLLYEIIALEMPFQATSLPALVHRI 153          
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1110.956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9J7_9PHAE2.720e-2590.57Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835YLD2_9STRA2.630e-2077.36Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836CA11_9STRA1.010e-1769.64Kinase-like domain-containing protein n=1 Tax=Trib... [more]
F2TW88_SALR57.140e-1558.49NEK protein kinase n=1 Tax=Salpingoeca rosetta (st... [more]
A0A813JW79_POLGL7.380e-1559.62Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A7S2DLM6_9DINO1.460e-1450.94Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S1U488_9STRA1.680e-1460.38Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
G0R6M7_ICHMG3.870e-1453.70Protein kinase domain protein n=1 Tax=Ichthyophthi... [more]
A0A7S3UUL5_HETAK4.620e-1472.09Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3H0A0_9STRA6.760e-1454.72Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1110contigD-dichotoma_M_contig1110:133147..133308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue4.5e-21
Seed eggNOG ortholog2880.D7FHW8
KEGG koko:K08857
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0589@1,KOG0589@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03036,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927625.0342407-CDS-D-dichotoma_M_contig1110:133146..1333081622927625.0342407-CDS-D-dichotoma_M_contig1110:133146..133308Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1110 133147..133308 -
1690798067.351799-CDS-D-dichotoma_M_contig1110:133146..1333081690798067.351799-CDS-D-dichotoma_M_contig1110:133146..133308Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1110 133147..133308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1110.956.1prot_D-dichotoma_M_contig1110.956.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1110 133147..133308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1110.956.1

>prot_D-dichotoma_M_contig1110.956.1 ID=prot_D-dichotoma_M_contig1110.956.1|Name=mRNA_D-dichotoma_M_contig1110.956.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=54bp
QVGTPYYTSPEMCNNQPYGFPSDVWSLGVVLFELLALDVPFRSRDVVVLV
SQVQ
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mRNA from alignment at D-dichotoma_M_contig1110:133147..133308-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1110.956.1 ID=mRNA_D-dichotoma_M_contig1110.956.1|Name=mRNA_D-dichotoma_M_contig1110.956.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=162bp|location=Sequence derived from alignment at D-dichotoma_M_contig1110:133147..133308- (Dictyota dichotoma ODC1387m male)
CAGGTCGGCACGCCCTACTACACATCCCCGGAGATGTGCAACAATCAGCC CTATGGCTTTCCTTCGGACGTATGGAGCCTCGGCGTCGTTCTGTTCGAGT TACTTGCTCTCGACGTGCCTTTCCGTTCACGGGATGTGGTGGTGCTCGTA TCCCAGGTGCAG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1110:133147..133308-

>mRNA_D-dichotoma_M_contig1110.956.1 ID=mRNA_D-dichotoma_M_contig1110.956.1|Name=mRNA_D-dichotoma_M_contig1110.956.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=324bp|location=Sequence derived from alignment at D-dichotoma_M_contig1110:133147..133308- (Dictyota dichotoma ODC1387m male)
CAGGTCGGCACGCCCTACTACACATCCCCGGAGATGTGCAACAATCAGCC
CTATGGCTTTCCTTCGGACGTATGGAGCCTCGGCGTCGTTCTGTTCGAGT
TACTTGCTCTCGACGTGCCTTTCCGTTCACGGGATGTGGTGGTGCTCGTA
TCCCAGGTGCAGCAGGTCGGCACGCCCTACTACACATCCCCGGAGATGTG
CAACAATCAGCCCTATGGCTTTCCTTCGGACGTATGGAGCCTCGGCGTCG
TTCTGTTCGAGTTACTTGCTCTCGACGTGCCTTTCCGTTCACGGGATGTG
GTGGTGCTCGTATCCCAGGTGCAG
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