mRNA_D-dichotoma_M_contig1104.916.1 (mRNA) Dictyota dichotoma ODC1387m male
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Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig1104.916.1 vs. uniprot
Match: A0A6H5K7H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7H2_9PHAE) HSP 1 Score: 332 bits (852), Expect = 5.440e-90 Identity = 223/405 (55.06%), Postives = 244/405 (60.25%), Query Frame = 2
Query: 1262 RDTDGCVVWYTD--DSAAEADIESMASVA-SVDSREDDLEAAASTDSEVASTASSTGGASSVCS-DSSRSRTGDRE------SRWSEEGEEDVLLGLSLALARETAGKPPCSCRQSVCSCRWKSSASSRGLAR----------PSSLPLPLARAELDSRDLALVAEINRMKRGYDELEGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGGMGGVHPDRALEFADRFVRRDISLTGRAQAVRLLKMSTNSILRVVARRGGLRALYGWLVDVWERVRAHKLPRVGPPDWRGVGGRLYVEDLLGVLARVPISVDMLRETEIARVAKKFRRLAERHGIESMIAASNRLRAHLHAVVSRGVQEGLFFATESSADIRLRPPSLHPGDVGRSKGRPL 2416
RD DGCVVWYT+ DSAAEADIES+AS A S SSVCS DSSR+R DR+ S WSEEGEEDVLLGLSLA AR TAGK CSCR++ C R++++++S R P P PLAR+ELD RDLALVAEIN M +G + G VHPD A EFA+RFVRRDI+L GR QAVRLL STNSI VV R GG RALYGWL DVWERVRAHKL R GPP W+GVGGRLYVE LL VLARVPISVDMLRETEIARVAKKFRRLAERHG+ESM ASN+LRAHLHAVVSRGVQEGLFF SA + P D GR G PL
Sbjct: 144 RDLDGCVVWYTESVDSAAEADIESLASRAESXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSVCSGDSSRNRVRDRDLSLELCSTWSEEGEEDVLLGLSLARARMTAGKAACSCRETSCFXRFRNTSASFASPRNRNQNPRTVVPLPPPGPLARSELDPRDLALVAEINCMAKGSRDRRGRGAGDERGVVATPGDAPVGEGMGAAGAGVAAARTPERLA----------VHPDCAFEFAERFVRRDIALAGRVQAVRLLYFSTNSIFSVVVRCGGFRALYGWLGDVWERVRAHKLARAGPPQWKGVGGRLYVEGLLCVLARVPISVDMLRETEIARVAKKFRRLAERHGLESMTKASNQLRAHLHAVVSRGVQEGLFFRNRGSA------AAAGPADYGR--GGPL 530
BLAST of mRNA_D-dichotoma_M_contig1104.916.1 vs. uniprot
Match: D8LTI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTI8_ECTSI) HSP 1 Score: 164 bits (414), Expect = 3.900e-38 Identity = 105/179 (58.66%), Postives = 113/179 (63.13%), Query Frame = 3
Query: 3579 NISGDGYVEAGADWWARSRFLSTAGVVGPRLEEYAFVGSSHEMRYAWSRRSSWTRWELNPPAPAFSLPTVPTFEESGTKVTWADFRGLRLAEVHEIEPGYSREDFALPGRVGFTTE--RRDMSKKEEQLLSQEDHDRLAAAALESPLVEG-GYGGAGSGGGDSEGTISDSENSTTGEPD 4106
N S DG E DWW R R AG + Y G Y S P + LP VPTFEESGT+V+WAD RG LAEVHEIEPGYSR DFALPG VGF TE RRDMSKKEEQLLS EDH+RLAAAALES ++ G GYG GGDSEGTISDSENSTTG+ D
Sbjct: 22 NASEDGSWEGTGDWWPRPRSPPPAGAA----DTYYASGDYDSGMYMNSFPG--------PQGASSLLPAVPTFEESGTRVSWADHRGHNLAEVHEIEPGYSRGDFALPGHVGFITEACRRDMSKKEEQLLSLEDHERLAAAALESDVLRGRGYGSGA--GGDSEGTISDSENSTTGDLD 186 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1104.916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig1104.916.1 >prot_D-dichotoma_M_contig1104.916.1 ID=prot_D-dichotoma_M_contig1104.916.1|Name=mRNA_D-dichotoma_M_contig1104.916.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=710bp MEEQPDPEATKSGDDTEDERSIPGTQNEKEGKSEVRSCREHPSDDTPQELback to top mRNA from alignment at D-dichotoma_M_contig1104:149645..210361- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig1104.916.1 ID=mRNA_D-dichotoma_M_contig1104.916.1|Name=mRNA_D-dichotoma_M_contig1104.916.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=60717bp|location=Sequence derived from alignment at D-dichotoma_M_contig1104:149645..210361- (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig1104:149645..210361- >mRNA_D-dichotoma_M_contig1104.916.1 ID=mRNA_D-dichotoma_M_contig1104.916.1|Name=mRNA_D-dichotoma_M_contig1104.916.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=4260bp|location=Sequence derived from alignment at D-dichotoma_M_contig1104:149645..210361- (Dictyota dichotoma ODC1387m male)back to top |