mRNA_D-dichotoma_M_contig1080.699.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1080.699.1
Unique NamemRNA_D-dichotoma_M_contig1080.699.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1080.699.1 vs. uniprot
Match: A0A7C1DFN9_9DELT (Crp/Fnr family transcriptional regulator n=1 Tax=Desulfonatronum sp. TaxID=1963255 RepID=A0A7C1DFN9_9DELT)

HSP 1 Score: 50.8 bits (120), Expect = 6.430e-5
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = 3 
Query:  138 EIVIKTLSGVPAFGPLHRDALEAIADTTSERHVDAGEIVAAQDDPAKEFFIIVSGEVRVFRRAGNCDGQE------GVDQ---EVNVLHGGS 386
            E +I  L  VP F  L RD L+A+ D    +    G+ +  + DPA+ FF+I+SG+V+V++ +   DG+E      G D+   EV V  GGS
Sbjct:    3 EQIIPHLDRVPVFHGLPRDQLQALVDIAEPKIHQQGDNIFMEGDPAEGFFLILSGQVKVYKLS--LDGKEQVLHFVGPDEIFAEVPVFSGGS 92
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BLAST of mRNA_D-dichotoma_M_contig1080.699.1 vs. uniprot
Match: A0A7V9SW28_9ACTN (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9SW28_9ACTN)

HSP 1 Score: 49.3 bits (116), Expect = 9.680e-5
Identity = 27/83 (32.53%), Postives = 42/83 (50.60%), Query Frame = 3 
Query:  147 IKTLSGVPAFGPLHRDALEAIADTTSERHVDAGEIVAAQDDPAKEFFIIVSGEVRVFRRAGNCDGQEGVDQEVNVLHGGSSFG 395
            +++L   P F  L +D L  +A  T +  V+ G+++  + +PAKEFF+I+ GEV V R            + V  L  G  FG
Sbjct:    9 VESLRRSPLFETLSKDELVHLAKVTEDLEVEEGKVLCREGEPAKEFFVIIDGEVEVTRSG----------RHVRTLKDGEFFG 81
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1080.699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7C1DFN9_9DELT6.430e-536.96Crp/Fnr family transcriptional regulator n=1 Tax=D... [more]
A0A7V9SW28_9ACTN9.680e-532.53Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1080contigD-dichotoma_M_contig1080:52960..56350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-07_004550.1
Hectar predicted targeting categoryother localisation
Exons4
Model size396
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1080.699.1prot_D-dichotoma_M_contig1080.699.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1080 52974..56350 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927579.075576-UTR-D-dichotoma_M_contig1080:52959..529731622927579.075576-UTR-D-dichotoma_M_contig1080:52959..52973Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1080 52960..52973 +
1690798045.4454298-UTR-D-dichotoma_M_contig1080:52959..529731690798045.4454298-UTR-D-dichotoma_M_contig1080:52959..52973Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1080 52960..52973 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927579.0887759-CDS-D-dichotoma_M_contig1080:52973..529991622927579.0887759-CDS-D-dichotoma_M_contig1080:52973..52999Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1080 52974..52999 +
1690798045.4550333-CDS-D-dichotoma_M_contig1080:52973..529991690798045.4550333-CDS-D-dichotoma_M_contig1080:52973..52999Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1080 52974..52999 +
1622927579.0997322-CDS-D-dichotoma_M_contig1080:54573..547101622927579.0997322-CDS-D-dichotoma_M_contig1080:54573..54710Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1080 54574..54710 +
1690798045.4639764-CDS-D-dichotoma_M_contig1080:54573..547101690798045.4639764-CDS-D-dichotoma_M_contig1080:54573..54710Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1080 54574..54710 +
1622927579.111816-CDS-D-dichotoma_M_contig1080:55108..552121622927579.111816-CDS-D-dichotoma_M_contig1080:55108..55212Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1080 55109..55212 +
1690798045.4738588-CDS-D-dichotoma_M_contig1080:55108..552121690798045.4738588-CDS-D-dichotoma_M_contig1080:55108..55212Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1080 55109..55212 +
1622927579.1414313-CDS-D-dichotoma_M_contig1080:56236..563501622927579.1414313-CDS-D-dichotoma_M_contig1080:56236..56350Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1080 56237..56350 +
1690798045.4853165-CDS-D-dichotoma_M_contig1080:56236..563501690798045.4853165-CDS-D-dichotoma_M_contig1080:56236..56350Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1080 56237..56350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1080.699.1

>prot_D-dichotoma_M_contig1080.699.1 ID=prot_D-dichotoma_M_contig1080.699.1|Name=mRNA_D-dichotoma_M_contig1080.699.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=127bp
MPCGIQRQLAVVRLQCRKPRHIKEAEGEVVRAFKRKVREQKEIVIKTLSG
VPAFGPLHRDALEAIADTTSERHVDAGEIVAAQDDPAKEFFIIVSGEVRV
FRRAGNCDGQEGVDQEVNVLHGGSSFG
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mRNA from alignment at D-dichotoma_M_contig1080:52960..56350+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1080.699.1 ID=mRNA_D-dichotoma_M_contig1080.699.1|Name=mRNA_D-dichotoma_M_contig1080.699.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=3391bp|location=Sequence derived from alignment at D-dichotoma_M_contig1080:52960..56350+ (Dictyota dichotoma ODC1387m male)
GCCGACTGTAAAGTATGCCCTGCGGTATTCAACGGCAGCTGTGAGTGTGA
AGTCATTACTATCTCTTGCATGAGGGAGCCTTTTACTCCTATGGATGACT
CATGATCTTCGAGTTATTGCTAACTTGACCGCCAGCATATATATATATCG
GAACACAGATTGAAGTCGTTCCCACTGCTCTCAGCCTACTAGTCGTCCCG
ACCGTCAAGTATGCCGGCATTCTGCAGCAGCTGTGGGTATGAACTCATTC
CTAACTCTAGCGTGAGGGAGCTTTTTGCACCTGTAGACTACTCGTGAACT
ACGAGTTGTTGCAAACTTCACGAGTATATAATTATCGGAACGCGCGTTGA
AGTCTCATTAACTCAGCCTTCCGTATGATTTCATGCCTATCCTTTGAGAC
CGACCTCTGCTTGAATGCACGGGACATTTGGCAAGGACCACGACAAAACG
ACGTGGGATTGGCTTTTACCGGAAATAATTCCACAGCATCAAGTGGGCTA
ACAGCCCTACCCAGTCATTCTCGTATATTAATTCGCAAGCTGATACATGG
GCAACAGTTAATCACTGGCTCAAAATCTAGTTGCTCCAATACGCTGGCAT
TATGGCATCACCAAAGGTGTTGGTTTGGGCCTAAATATCCCTAATACCAT
CTGCTCGATAGGAGAGATCGCCTTGGTGCCTTATCTCGGCATTGCTTGGA
TCCTTTGAAGGTGATGCCTGTTGGCGTCTGCTTGACCACTGAGCTAATTA
CCCAGCCGCTGACAACTTCGTCTGCTGTAGCACAGTGGCTAACCACACGT
CAACAACCTCAACATGGAAGTTACCTAACTCGAAAATGTTTGAACGGATA
TGACCAATTACGCATTGCCATGTATGTCCCTCGTACGGCATTCAGGGGTA
TAGCGTTTACAACAGGCTACGGCAACCCTGGAGTGAAATTGAGGCGTCGA
AAGAATAGTCTAAACGCACATCGTTTCGACCTTTTAGAGCTCTTGCGGAC
TTGACGCTCGAGCACTATACACCAAAATATTGCCTGAGCCGTTCATTTTG
TGGCCACCAGCAACCTTGTAGGGGATCGGATGCATTATGTCGTGGGTTAC
AAGTCATGTTCACGCCGTTGGAACAACGAGTAATCCACTGAGCTACCAGT
CAGCGCTGACTGAGTAGCTCGGTTGATTATTTCCAACGAAAGCTAATCTA
TAGGTTCGCATCCTATGATACGAGGAGTATTTTGCCAAAAGCTAATCCTA
CGGTAGTTGAAGTGTTAATCTTAATAGCTTTCGGCAATTCACGTAGTAAA
AAGGGTACAGTAGATTGTACACATTCCTGTTAAAAAATGTCCTTTCCTCG
CCGCTTAGACTCCCCAAATACGTTGCCCATCACCATCATCATCATCATCA
TCATCATCGCTTGCACCGAAGACTAAACTTCTACCTACAAGAACTTCCTG
AACACGAGGGACATACCCTCTGATGCGTTGTATCGATGTTACTCCAGTCC
AAGGTCAGAATATTTCCGTACTATGCCGTGTCTCTTTGACTCGTCAACGG
GATTCTTCTGTCTGCATCTTCTGTCTGCTTTGATGATCTGTGGGCTCATG
TGGGACCCATCCAGCGCAGTTGTAAGGCTCCAATGCCGAAAGCCACGACA
TATCAAAGAAGCAGAAGGAGAGGTCGTCCGGGCCTTTAAGCGGAAGGTCA
GGGAGCAGAAGGAGATTGTCATCAAGACCCTGTCCGGAGTCCCAGCGTTC
GGTAAGACCATAGGTCACCACATAGATCAGAGTCGAATAGCTTCTTCCAA
AATTCAGACGGGATACGCGAAGCAGTGGCCGTAGAGCACGTTCTTGTTGA
TGTCATCGAGGTATGTGGAAGTCGAGCACTCCTCATCGCAAGGAACAATG
GTCGGGTCGAGCGAATGTTTGCCCGAGGTGACGAGAGTGTCCAATAATCT
TGCACCTTACTTCGAAAATTGTGAGCGAATCAAGGGGAATGAAACGCAGT
AATAATCTTCTCCAACAGAGTTCTCCGGCAGGGTTTTCAAGAAGAGTTCG
TCTCTCATGTGCCAGGCATACTTGTGGAGAACGACCTTCTGGGTAATTTT
CCCACGGATTCATGTTTCTTTCCCTGGAATCTCTGTCTGTCCACCACAGG
ACCTTTGCATCGGGATGCTCTTGAGGCTATTGCAGACACAACTTCCGAGA
GACATGTTGACGCAGGGGAAATTGTAGCGGCACAAGATGATCCGGCTAAG
GAGGTAGGTGACCAGTCGAGAATGGTTACGTAGAGAGGAGAAACCGAGAC
TATGATGACTGATTCATTTTGTCCGAGACATGTCTGAGTGACCGATCCTC
TCTTGAACCCCCAACTGTGGATAGCAAGCAATACTGTGCTTTATTAGAAG
CTAGAGGTCTGCTGACGGTTCTCATCTGACACCTGAATGATACTAATTTG
ATACCGGTGCATCTGACCCGACGTGCGTGACGTGAGTGACGTGCGTGACG
TGAGTGATGTAAGTGACGTGAGTGACGTGTGAGAAAGGGGGCTTGTATTC
GGGTTCAGGTGCTCCCTTATGAAGGGACAATAGGTAATATGATCATGAGA
AGGGCGACCATAGCTAGAGCTAGATGTATTGTACTTATGATGAAGGCGTA
GACATTGTGGATGTTTGTCACAGCTTGTCTTCGAGCTTTCAGTCTTCCTG
GACAAGGTACGCGGGGGTTCCGAGCCTAACTTGGCCCACTCTAAGCGTTA
CGCCATCGTCAATGCCCTCCATATGCCCTATTTTGTGAGGTTAGGTGTGT
ACGTTGTGTACGGTTACAGAGCTATCTCGGGTAAGTTGACGTCAGTCTTT
ACTTCCGGTCCCAGTATGACAAGTATACTTTGATTAAATCCCATCAAATC
CCACCAAATCCCATCTGACCGACCGAGGGGGGTCCAGTAAGCTGCAGGAA
GTACTGGAGCCATGTGGCCTTGGTAGATGGGGATGGCCTTAAATGTTGGA
CTTTATTTCATCCACCAGTACAGAGCTCTTCCGCAGGATGATGATAGATA
ATCGGATAATGATTGGGTGATACGAAGATGGCGATGGGATGATGTTAAGA
TGATTGCAGCAAGTAAGATCATGCCACGAGCAAGGGAAGCAAGGATTTCC
ATCAGGACAACAATCGTTTCCCCTGGCACCAAGGTATATCCCAAAGGGGA
AGCTTGAAAGAGCTACGCTCTCACTTCTGGTGCGGCTTGTGACCTTCGTC
GTGTGGAACTTGGATTGATGCCCGCAGTTCTTCATCATCGTATCGGGGGA
AGTGAGGGTGTTCCGACGCGCAGGCAACTGCGATGGCCAGGAAGGGGTCG
ATCAAGAGGTGAACGTGCTGCACGGCGGGAGCTCGTTCGGC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1080:52960..56350+

>mRNA_D-dichotoma_M_contig1080.699.1 ID=mRNA_D-dichotoma_M_contig1080.699.1|Name=mRNA_D-dichotoma_M_contig1080.699.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=762bp|location=Sequence derived from alignment at D-dichotoma_M_contig1080:52960..56350+ (Dictyota dichotoma ODC1387m male)
ATGCCCTGCGGTATTCAACGGCAGCTATGCCCTGCGGTATTCAACGGCAG
CTCGCAGTTGTAAGGCTCCAATGCCGAAAGCCACGACATATCAAAGAAGC
AGAAGGAGAGGTCGTCCGGGCCTTTAAGCGGAAGGTCAGGGAGCAGAAGG
AGATTGTCATCAAGACCCTGTCCGGAGTCCCAGCGTTCGCGCAGTTGTAA
GGCTCCAATGCCGAAAGCCACGACATATCAAAGAAGCAGAAGGAGAGGTC
GTCCGGGCCTTTAAGCGGAAGGTCAGGGAGCAGAAGGAGATTGTCATCAA
GACCCTGTCCGGAGTCCCAGCGTTCGGACCTTTGCATCGGGATGCTCTTG
AGGCTATTGCAGACACAACTTCCGAGAGACATGTTGACGCAGGGGAAATT
GTAGCGGCACAAGATGATCCGGCTAAGGAGGACCTTTGCATCGGGATGCT
CTTGAGGCTATTGCAGACACAACTTCCGAGAGACATGTTGACGCAGGGGA
AATTGTAGCGGCACAAGATGATCCGGCTAAGGAGTTCTTCATCATCGTAT
CGGGGGAAGTGAGGGTGTTCCGACGCGCAGGCAACTGCGATGGCCAGGAA
GGGGTCGATCAAGAGGTGAACGTGCTGCACGGCGGGAGCTCGTTCGGCTT
CTTCATCATCGTATCGGGGGAAGTGAGGGTGTTCCGACGCGCAGGCAACT
GCGATGGCCAGGAAGGGGTCGATCAAGAGGTGAACGTGCTGCACGGCGGG
AGCTCGTTCGGC
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