mRNA_D-dichotoma_M_contig1035.385.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1035.385.1
Unique NamemRNA_D-dichotoma_M_contig1035.385.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1035.385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1035contigD-dichotoma_M_contig1035:147730..148688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size540
Cds size411
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1035.385.1prot_D-dichotoma_M_contig1035.385.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1035 147858..148688 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.5426426-UTR-D-dichotoma_M_contig1035:147729..1478571622927524.5426426-UTR-D-dichotoma_M_contig1035:147729..147857Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1035 147730..147857 +
1690798017.737459-UTR-D-dichotoma_M_contig1035:147729..1478571690798017.737459-UTR-D-dichotoma_M_contig1035:147729..147857Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1035 147730..147857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.554176-CDS-D-dichotoma_M_contig1035:147857..1480701622927524.554176-CDS-D-dichotoma_M_contig1035:147857..148070Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1035 147858..148070 +
1690798017.7496228-CDS-D-dichotoma_M_contig1035:147857..1480701690798017.7496228-CDS-D-dichotoma_M_contig1035:147857..148070Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1035 147858..148070 +
1622927524.5652597-CDS-D-dichotoma_M_contig1035:148326..1484171622927524.5652597-CDS-D-dichotoma_M_contig1035:148326..148417Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1035 148327..148417 +
1690798017.7586708-CDS-D-dichotoma_M_contig1035:148326..1484171690798017.7586708-CDS-D-dichotoma_M_contig1035:148326..148417Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1035 148327..148417 +
1622927524.5759559-CDS-D-dichotoma_M_contig1035:148581..1486881622927524.5759559-CDS-D-dichotoma_M_contig1035:148581..148688Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1035 148582..148688 +
1690798017.7688377-CDS-D-dichotoma_M_contig1035:148581..1486881690798017.7688377-CDS-D-dichotoma_M_contig1035:148581..148688Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1035 148582..148688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1035.385.1

>prot_D-dichotoma_M_contig1035.385.1 ID=prot_D-dichotoma_M_contig1035.385.1|Name=mRNA_D-dichotoma_M_contig1035.385.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=137bp
MTSDTAHCSTTNKIRGEGCGEGCPVFVLCPLVLVVFFAAACIIGYDDSAP
NMSGRYLRGPVKTTPGHHSRPVSDFLYIGGEEKRRSQKTQDSQRVSLKEL
PDSDESEEVAAEVDDTSDSGLNLPFALRWPDTHPLIA
back to top

mRNA from alignment at D-dichotoma_M_contig1035:147730..148688+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1035.385.1 ID=mRNA_D-dichotoma_M_contig1035.385.1|Name=mRNA_D-dichotoma_M_contig1035.385.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=959bp|location=Sequence derived from alignment at D-dichotoma_M_contig1035:147730..148688+ (Dictyota dichotoma ODC1387m male)
TCAAACTCTAAACTCCATGTACAGTCCACATAGCTTACTCTGGATCACGT
TCAGCTCTCAAAGCTAACCGGAAGAGCAACTGTCGGACGCAACAACAGTG
ACAAGCCTGACCAACTGTGGCACTTGCGATGACTTCTGATACTGCTCACT
GTTCTACTACAAACAAGATTCGTGGAGAAGGCTGTGGAGAAGGCTGCCCA
GTGTTTGTCCTGTGTCCTCTGGTGCTGGTGGTGTTCTTTGCAGCAGCGTG
CATCATAGGTTACGACGATAGTGCTCCCAACATGTCTGGGCGATATCTAC
GCGGACCGGTCAAGACTACGCCGGGTCATCACTCTCGACCGGTGGGTCTT
GGTGTGTCTCTTGCCTGATGGGGAGGCCAGATATGACGATTGCTTAATTT
CGAAGAGCGACTGGGATTCGACAGTGGTATGGACAGGCACTTGTTTCCCC
TAACGAGAATCTGGAATCGATGCCCTTTAACTTGAAGAACTAACTACGCA
GTGTTGAACAATGAGCTAGGAGTTTCCCCTGTAGTGTCTGTGGCAAATGC
AAGGCGTGCTCATCTTACGGCGATACATCCCACCCACGACATGACAGGTG
TCCGATTTTCTGTATATCGGAGGCGAGGAGAAGCGACGATCCCAGAAGAC
TCAAGATTCGCAGCGAGTCAGCTTAAAGGAACTTCCAGGTAAGGAGTCAT
TCTCACCGATGCGCTTGTCTGTCCAAAATTGCGTGTAGCAGTCTAGAGCA
TTTGCACTTCACCTTTCTAACCTGCTACACGCGTCTTGTTCCTTGACCAT
GTGGCACTTGCTCGTCGTCGTTGTCTCATTCTACACACCGTTCTATCTGT
AGATTCTGACGAGTCTGAAGAGGTTGCAGCGGAGGTGGATGACACCAGCG
ACTCCGGCCTCAACCTCCCGTTCGCATTGCGATGGCCCGACACGCATCCT
TTGATCGCG
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig1035:147730..148688+

>mRNA_D-dichotoma_M_contig1035.385.1 ID=mRNA_D-dichotoma_M_contig1035.385.1|Name=mRNA_D-dichotoma_M_contig1035.385.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=822bp|location=Sequence derived from alignment at D-dichotoma_M_contig1035:147730..148688+ (Dictyota dichotoma ODC1387m male)
ATGACTTCTGATACTGCTCACTGTTCTACTACAAACAAGATTCGTGGAGA
AGGCTGTGGAGAAGGCTGCCCAGTGTTTGTCCTGTGTCCTCTGGTGCTGG
TGGTGTTCTTTGCAGCAGCGTGCATCATAGGTTACGACGATAGTGCTCCC
AACATGTCTGGGCGATATCTACGCGGACCGGTCAAGACTACGCCGGGTCA
TCACTCTCGACCGATGACTTCTGATACTGCTCACTGTTCTACTACAAACA
AGATTCGTGGAGAAGGCTGTGGAGAAGGCTGCCCAGTGTTTGTCCTGTGT
CCTCTGGTGCTGGTGGTGTTCTTTGCAGCAGCGTGCATCATAGGTTACGA
CGATAGTGCTCCCAACATGTCTGGGCGATATCTACGCGGACCGGTCAAGA
CTACGCCGGGTCATCACTCTCGACCGGTGTCCGATTTTCTGTATATCGGA
GGCGAGGAGAAGCGACGATCCCAGAAGACTCAAGATTCGCAGCGAGTCAG
CTTAAAGGAACTTCCAGGTGTCCGATTTTCTGTATATCGGAGGCGAGGAG
AAGCGACGATCCCAGAAGACTCAAGATTCGCAGCGAGTCAGCTTAAAGGA
ACTTCCAGATTCTGACGAGTCTGAAGAGGTTGCAGCGGAGGTGGATGACA
CCAGCGACTCCGGCCTCAACCTCCCGTTCGCATTGCGATGGCCCGACACG
CATCCTTTGATCGCGATTCTGACGAGTCTGAAGAGGTTGCAGCGGAGGTG
GATGACACCAGCGACTCCGGCCTCAACCTCCCGTTCGCATTGCGATGGCC
CGACACGCATCCTTTGATCGCG
back to top