mRNA_D-dichotoma_M_contig1024.297.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1024.297.1
Unique NamemRNA_D-dichotoma_M_contig1024.297.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1024.297.1 vs. uniprot
Match: A0A6H5LC22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC22_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 7.580e-6
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 3 
Query:  534 SSWDSSPFNLQHIGENSLGLITKACSQLFCYPRVSSLDLWL 656
            SSWDSSPF+L  I +N+LGL+ K+CS  FC   V  LDLW+
Sbjct:   60 SSWDSSPFHLDSITDNNLGLLAKSCSDKFCQAGVDGLDLWV 100
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1024.297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LC22_9PHAE7.580e-658.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1024contigD-dichotoma_M_contig1024:28101..34534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_002760.1
Exons2
Model size2807
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1024.297.1prot_D-dichotoma_M_contig1024.297.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1024 28547..32587 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927511.076742-UTR-D-dichotoma_M_contig1024:28100..285461622927511.076742-UTR-D-dichotoma_M_contig1024:28100..28546Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1024 28101..28546 +
1690798009.9553137-UTR-D-dichotoma_M_contig1024:28100..285461690798009.9553137-UTR-D-dichotoma_M_contig1024:28100..28546Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1024 28101..28546 +
1622927511.1096683-UTR-D-dichotoma_M_contig1024:32587..345341622927511.1096683-UTR-D-dichotoma_M_contig1024:32587..34534Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1024 32588..34534 +
1690798009.9876513-UTR-D-dichotoma_M_contig1024:32587..345341690798009.9876513-UTR-D-dichotoma_M_contig1024:32587..34534Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1024 32588..34534 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927511.086619-CDS-D-dichotoma_M_contig1024:28546..287681622927511.086619-CDS-D-dichotoma_M_contig1024:28546..28768Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1024 28547..28768 +
1690798009.9654737-CDS-D-dichotoma_M_contig1024:28546..287681690798009.9654737-CDS-D-dichotoma_M_contig1024:28546..28768Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1024 28547..28768 +
1622927511.0980775-CDS-D-dichotoma_M_contig1024:32395..325871622927511.0980775-CDS-D-dichotoma_M_contig1024:32395..32587Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1024 32396..32587 +
1690798009.9755983-CDS-D-dichotoma_M_contig1024:32395..325871690798009.9755983-CDS-D-dichotoma_M_contig1024:32395..32587Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1024 32396..32587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1024.297.1

>prot_D-dichotoma_M_contig1024.297.1 ID=prot_D-dichotoma_M_contig1024.297.1|Name=mRNA_D-dichotoma_M_contig1024.297.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=138bp
MTLVVMLASTLITLKWSTVDAVKSPSTDVSSWDSSPFNLQHIGENSLGLI
TKACSQLFCYPRVSSLDLWLDLGKVCVETRLLPSLDTVESSTQAPENVKP
WSPYLVGAVCGIVAGASLFAGYKVGSNRRRILPMLFV*
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mRNA from alignment at D-dichotoma_M_contig1024:28101..34534+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1024.297.1 ID=mRNA_D-dichotoma_M_contig1024.297.1|Name=mRNA_D-dichotoma_M_contig1024.297.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=6434bp|location=Sequence derived from alignment at D-dichotoma_M_contig1024:28101..34534+ (Dictyota dichotoma ODC1387m male)
GAGACACGGGTGTACAGTACTCGCACGGTCGAATACCTGCTGCTATCAAC
CATCGAAGATCGATGACAAGAAATGTATCGCGCTCGCTCGTGCCGCAGAC
GAGTTCGACTCAGGAACGAACCCACTACGTTCCTGTTTCACTTGATCGAG
CAAAGCCAGCCTTGACCTTCGGTGCTCAATACCCTCGAAGATCAGTTCCA
CCGCTTGCGCCAGTTGGACGAGGCTCTTTTGCTTCCAGTCAAAACCTCTA
TTTTCTGGATCATCCGAGATTACCTCACGATACACGTCTTCGGCAAACGT
TTACGACGACCTGGATTGAAAAACGTTGTTAGCGTTCTTCACTTCACGAC
AGGAGCACACACACAGCGGTCACGTTTGGCGAAAGACACATCGGGTTTGT
TCAACAAGTTGACGCCCGGAAAGCTCAAGACAATACCGGCATCACGATGA
CACTTGTGGTCATGTTGGCGAGCACCCTGATAACATTAAAGTGGTCAACA
GTGGACGCAGTCAAGTCCCCATCCACCGACGTGTCTTCATGGGATTCATC
ACCTTTCAACCTGCAACATATAGGCGAAAACAGCTTGGGTTTAATCACTA
AAGCATGCTCCCAGTTGTTCTGCTATCCAAGAGTCTCTAGTCTGGACCTA
TGGTTGGACTTGGGAAAGGTGAGTGAAGATTACAGTTCATGATACGCTGA
TGGATGGGTTTCCGAAGTCTGTTGTGGTCAATCTGGATGCTGCGCCCCTG
ACATCGACGAACCCTCCACAACAACTGCTGCATCACCATGGTGCATTCAG
GGTAGATCCTCTCCTCAGCGTTGCGGGTTATGACGAAGCCAACGACGCCT
TTGATTCCTCGAGGAGTGGAGTATATTTCGTTAGGCTACCGTCGGTGTTC
GGCGTAGGACGTGCGCGTTGTGACGGTTGATACGAAACTACAATTCAAAG
TGCTGCGAAGTTCACGCGTTTTACGGAACTGTATTTTTGTTGCTGAGGCT
CGGCTGAGGCTTTAAGCCAGTTTATTTCGCTCCACTCTTGTAATTACCTT
CCCTGCAAGATGCTCATTACCGTCCTGGATCATCAGATTTTAGGGGAATC
CTCGCGCTTTGCATTTTCCCCTCGGTAAATGCCGTCATGGACCTCTCCTT
CGAATGGTGCTCGCTTGAAACTCTCCAGTTCAACTTCTTGTCCTGTATAT
GGTATGTACGCAAGTGTGGTCGAAAACGGTACAAGTACCTTGCGTTTCAT
GTCGGAAGAATGTCCTGGAAGTCGGAGAAAGGCTTGTTTCGTTGAAGACA
TCCATCCGTCCTCTGTTGTTCTCTGCCACACTTTTGCTTGCGGACCGACA
TCTGTAGTATACAAGGGTTCTTGAATTCGTGTTCTGTGGTACACGGTGCT
CGATCTTGTCAAGGTGTTAAAAAGGGTCGAGCGTCGTATGGTGATGCCAA
GTTACGTGTATGCGCCCCACATGGGAGGTAGCGTTCTGTATAGGGGTCTG
AAGTCCTGGGGGAAAATCCGCCCCTCCCCATGCTGTATTCTCGCCAGAGG
ATGCAGCATGAACATGAATCGTCGTCGTTAGTTCATCATGAGAGTTTCTC
CTAAATTCTTTCGTTGATAAGGTGTGCGAGCTTTGAGACGGTCGCATGTT
CGCTCCAGTTTCCGTTTTTTCATGTGAGCATGGAGCATTGGCACCTAGGT
CTCCTCACGTCAGGCATGAATTCTTGAGTAATTTTTCTTGCCGTGGGCGA
GATGTCGAAAAGCTGCTGCCCTCGGTGAAGTTTGTCTAGGGTCATGTCCA
GGGTCCAATGCATGTCGTCTTGTGGCTTTCTTGCGCGACAATAGCTTGAC
GTTCGATCTGTCATCTTACGATCATGTCATCTCACAGCCGATTGCAGCAC
ATCGTAGGCGGGAGAACGTGTCATATTTGGAGGTTTGAGTTTTGTATGAC
GTAACGGCTCTCCAATAGAAGGAGCACAGCTGTTCGGTAAGAAGCACCCG
TCTCTCGACGTGAGACCTCCATCGAAATGTGCAAACGACATGCTTTATCG
CACGACAAAAGAAGAGTGATTATTCGTTCTCGTGGTATGATGATGGCAGA
GAGGTGAACCACAAATCGAGACGTCGCGTGCGCGCCACTGGCCTGAAGTG
GCCAACTTTGCAGCCCTCCCCAAGGAGAGCCTCAGGTTGGAGCTGGCTTT
GGGACTGGTCCATGGTGACCCAAGTTTAATGAGATCCCGAAACGCAACAC
ACTACGCTGAAATTTCAGTGCTGCATGTTCAATATGACGTGCAGATTACT
GCAGTAGCCGCTCACTGTATGGTGCACTGCAGTATGTTCAGCACTGCTTG
CGCACCATATTTTGAGGTTCGTCACCAGCAGCAAGGCTGTTCTCGGAGTC
ACCCCAAGCCCCGCAGAGATCCTTGATCTCTTGTGGCTGGGAACTCCTCG
CACCTGGGAACTCCTCGCACCGCAGTGCAAGAGTTCAAGTGATCACTACA
TGACTCGTTAGTTGGATACATCCAGAATCCAAGTACTGTATTGATACTGT
ACAGATGATGGGAATTGGATCTATCTTGCGAAGATTTGAAGTACAGCAGT
GTACGGCACTGTGCTGTGCTGGGTTGGATCTAACAACAAATATTAATCCG
CTTTCCAAGCCCGAAATTCTTTTGAGTTCTGTTCTGCCCTATATCTAGAC
GAGACCTGATTCGCCGCTGCGACCAATGACAATCATTGCTTGCTCCATGA
TTTTCTTCAGAATGTCGTGTGGTGGATCCGCACCCCTCAGTCTGTCACAC
ATACTGTGCTGCACTGTAGCTAGCTTCTTGGGAGGATCAAAAGTTTGGAC
GAATCGTCTTCGGGCTAAAGATGTTGATAAAAATCGATCGAGTGTGTTCA
GGGGAAAACGGGCAGGTTCTTCTTGTGCTTGTGGGTCACGCATGCCTCAT
GCCTCATGCGTCACCCCGCGCCCGGCTGCACTTTCACCAAGCCCGTAGAC
GGTAGGTATGTCCGTCCACTTGGATTGGATTGCCCACGGGTCCTCCACTG
CTTTTGGTCCGCCAGATGCTCGCAGCTCCTGGGAATGTACGGCTCGGGAA
GAAAACACCCCACGATACGCCACGCCCTGGCGGCCATCGCACCTGAGAGA
GAGCGTGTCAAATTCCTCATAATTTATATCATGCTGGGCAGTATGCTGGA
ACAGCGACTGAAGTTCGTCTGTTATGAAGCGTATCGCCACGCTTGTCGGC
AACACCCGGCCATGTGTCGCTAAGAAGGGCCGAAGCTCTTGCCCACGTGT
CCTCTCCTCCCCTCGGGTCGCGTATAGTAATTACTGTGCAGTACTGTACA
CCGGAGACTGGTCGAAAAGTGGAGGTGTAGCGGCCTCCGCTGAGTCATGA
GGAACAAGATAGATGCGCCGCCCTGGTTTCTGGTTTCTGTCGGGGGGACA
TGTCTTCGCTACGGTACCACTGTCGTCCATACCTCACGAGCGGCTCTATT
GAATTACTACCCCACAGTAAAGTAAAGTATTCCAGTACAATACTTGAAAC
AACAAAAATGAAGCTTGGGGTCCATTGCACTGGAAGTTGATTAGCAGTCC
GTCGAATCTTGGTATTTTCCTGTTACAACAACCGCTGTCGAATTCGTCAC
TCGCTTGAGGATGGTCATCAGCTCCACCAAAACGGACCAAGAGTTTGGTG
GAGCTGATGCATGATTCGCCTCCCCCGACCTCCCCCACATGGCGACCCCG
AAGTTGCTCCTCCTGCATTCGTTGAAATTATACATAAGAATCGGACCTTC
AAAACAATGACCTGTTTTGTCTATGCGGAAAAACCCAAGCACTGCACCTT
GCCTTGGACAAGCCGAACCTACCTTCGCGGCCTACTTAACTGCTGTAAAG
TCTCGGGATTGCCTCGAGCACTCCTGGTGATCGCGGGCTAAGGACAAAAG
CCACATCGTAGGGGAGCGACCCTGAAGATAGCGTGGGGCGACGAGAGGAG
TGCGGTCGGTTCTACCGGCGCAGCAAGACGCTTCTCCTCTCGTCTCCCCA
CACTATCTTCATTTCCTAACTGCATCCGAACACGATTAGCACCTACGGCA
CTTATATCGGCTTTCCCCCCAAGACCTCGCGATCATCTTCGTGCTACCGA
TTCCACTTTGAAGGAGATCTCAAGCATCATCACGAAGCTTTTACCTTTGA
TCACGCTGCTATGATAGCAGCGCCCCGGCTTGTACCCTCACAGCGTCTAC
ACGCCCCCCCCCATCCTGATGCTTCGTCCTGGGAAACGGTGTCAGGTGTG
CGTGGAGACACGACTGCTCCCATCGCTGGACACCGTAGAAAGTTCCACAC
AGGCTCCGGAGAATGTAAAACCGTGGAGTCCCTACCTCGTGGGAGCGGTG
TGTGGGATCGTGGCCGGAGCATCGCTCTTTGCGGGCTACAAGGTCGGCTC
GAACAGGAGGCGAATCCTGCCGATGCTGTTCGTATGACGGTGATGTAGCA
ACTGCCTCGCCACACGCGTTATTGGCGTTCGGCCCACGTTCAATAGTGGT
GCGAGGCGGTGGGTAGTCGACCGAATGGATGCATCAGACGCGCATCGTGA
TCGATGTAGCCGCCCGTGAGCGCAAGGTCCTCCTCGTAGTTCAACAACTT
TTGTTTTTTCTTGCTGTTTCCGAGGATTATTTTCGCAACGGTTTTGACCG
GCCAATTTGGTCTTGACGTGTGTGGAGGGCGGGGGGGCTCATGCTACCAT
TTTACGAGACATTCCTTTAAATATGTGCAAATATATCACACCCATGTAAC
CCTTTAGATGCTCGGGTTGGGTTATACAGTACAGTACAGTAGTCCTTATC
TTATCTTATCGAGGGAGGAACATGAATGCCAGGCAAGATAAAGAAGCCTT
AAAAGATAAGTGTTCCATGAAGAGCGTATAAGAAAAGTCGATGAAATTCG
TCTCGGAGCGTCTTACGCAGGTGTGTTTAGTCGAATCAGTTGGGATAACG
GGGACTGAATAATAGCAAATCTAACCCTTGGGATAACCCCGATACCGCTA
GGTGTCAGGTGTCAGGTGTCCTGAGGGTTAAGATGTCCTTGTGTCTGTCT
TTCTTTCTCTTTCTAGCACTTCTTGTTCGGACGTCGTTGGAGGATCACTC
GGTTTTCCACCGATTATACTACTCGCATCGTACTGCGCTTTTTGTTGGTG
GACGTCCATGTGCCTTCCAATAGACCTGAACTTGAGGGCTCTATGTCACT
CCGCTTGTTGAGCAGTGTTGGGGGTAGGACACCCGAGGCGGGAGATGCCT
CGATAACTTTGGGCGAGGTACAGTATAGGACGTGCTACGTACCGTGTTTG
GTGTGGGAAGGTTTGTTACATTTGGGTGTTGTTCGGAGAGACCCAAATGG
GCTGTGCACAAGCTCTTGCAGTTCGAATCGTTATCGATAGCGGGTCACGT
GTAACAAACACTGTGGTGCGTGCAGGAGTGGGGTGCGTGGGTCGCCAATT
GTCACTTGAAGGCCAGGGGGAAGCAAGAGGGGAACTGCTTAGAGTTGTCG
TCGTCCGGAAAAGAAAAAAAAAAGGGTTCAAGCTGGGAGGCTCATAAGCC
TGAGACATCGTAGACGACTTTCATTTCGTCGCTTCTTCGAAGTAGTGTAG
TGTCGGAGGACGACCACCATTTGCTCCTTGGTTGGGACCTGTGACCGTGG
CCATATGGTTGGACTGGCGACGGGGAAAGAAATATGCTGGGAAGGCAAGG
CGTTCGTTGCGAGTTGTGCGGCACGTGACGCGTTGCTGATCGTGGCACCT
GGGAGTACCACAGTATTGCAGGTCGCAGCATGTTAGTACGAGTGTTGGGG
CGGTGTTGGCTGAAGTGGCCCGTGACGAGATGCTGAGGGTTTGGGGTAGG
TTATCCTGACATCACGAGCACTCTCATCTCTGCCCGCCCCTTGAAATTGG
TCGGTCGCAAGGATGTTGCGACGGATGGATCCTGGGAGACTTGTGGGGGT
GGAATCAGACGCCAGGCGTGTCTTTCTCGCCCCAAATACCTGGAGGTTGT
TGGTTGGGTACCGCGATAGAGGTGGTCATCGTGGGCTAAAGTATTAGTTT
CCCGGGCATGAGCACGGGCCATAAGTGGTGAGTGGGATGAGTAACGAGGT
GTCATAATAGGTCATGATCGGAGTTAGTCGGCGCGAGTTGCTTCGGGACG
GGGGCTGGTTGGATGCCTCATAATTACCGGGACCATCTCTATCTACTGTA
GCCTTGATATCAGGCCTCAGGCCTCCATCACGTCCCCCTCGTAGGATGTC
CTAGAGTTCTCATATCTCGAACGCCCACCCGTGTTTTCGAACGTGCCCTC
GGCCTCTGACCCCTTCTACAGTAGGATCTCTGACGAGCCGATACGGGAAG
TCATCGATCATCAATAATCAAATATGCATGAACG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1024:28101..34534+

>mRNA_D-dichotoma_M_contig1024.297.1 ID=mRNA_D-dichotoma_M_contig1024.297.1|Name=mRNA_D-dichotoma_M_contig1024.297.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=828bp|location=Sequence derived from alignment at D-dichotoma_M_contig1024:28101..34534+ (Dictyota dichotoma ODC1387m male)
ATGACACTTGTGGTCATGTTGGCGAGCACCCTGATAACATTAAAGTGGTC
AACAGTGGACGCAGTCAAGTCCCCATCCACCGACGTGTCTTCATGGGATT
CATCACCTTTCAACCTGCAACATATAGGCGAAAACAGCTTGGGTTTAATC
ACTAAAGCATGCTCCCAGTTGTTCTGCTATCCAAGAGTCTCTAGTCTGGA
CCTATGGTTGGACTTGGGAAAGATGACACTTGTGGTCATGTTGGCGAGCA
CCCTGATAACATTAAAGTGGTCAACAGTGGACGCAGTCAAGTCCCCATCC
ACCGACGTGTCTTCATGGGATTCATCACCTTTCAACCTGCAACATATAGG
CGAAAACAGCTTGGGTTTAATCACTAAAGCATGCTCCCAGTTGTTCTGCT
ATCCAAGAGTCTCTAGTCTGGACCTATGGTTGGACTTGGGAAAGGTGTGC
GTGGAGACACGACTGCTCCCATCGCTGGACACCGTAGAAAGTTCCACACA
GGCTCCGGAGAATGTAAAACCGTGGAGTCCCTACCTCGTGGGAGCGGTGT
GTGGGATCGTGGCCGGAGCATCGCTCTTTGCGGGCTACAAGGTCGGCTCG
AACAGGAGGCGAATCCTGCCGATGCTGTTCGTATGAGTGTGCGTGGAGAC
ACGACTGCTCCCATCGCTGGACACCGTAGAAAGTTCCACACAGGCTCCGG
AGAATGTAAAACCGTGGAGTCCCTACCTCGTGGGAGCGGTGTGTGGGATC
GTGGCCGGAGCATCGCTCTTTGCGGGCTACAAGGTCGGCTCGAACAGGAG
GCGAATCCTGCCGATGCTGTTCGTATGA
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