mRNA_D-dichotoma_M_contig1022.287.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1022.287.1
Unique NamemRNA_D-dichotoma_M_contig1022.287.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1022.287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1022contigD-dichotoma_M_contig1022:217195..217586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size392
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927509.1188953-CDS-D-dichotoma_M_contig1022:217194..2175841622927509.1188953-CDS-D-dichotoma_M_contig1022:217194..217584Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1022 217195..217584 +
1690798008.4654894-CDS-D-dichotoma_M_contig1022:217194..2175841690798008.4654894-CDS-D-dichotoma_M_contig1022:217194..217584Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1022 217195..217584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1022.287.1prot_D-dichotoma_M_contig1022.287.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1022 217195..217584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1022.287.1

>prot_D-dichotoma_M_contig1022.287.1 ID=prot_D-dichotoma_M_contig1022.287.1|Name=mRNA_D-dichotoma_M_contig1022.287.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=130bp
VLIPNDTRYLAHADTNSIKLPRRYGTQHSDSDVASATSGRTTWFPIEQHC
PVFLPFLFSLLLSISKLVHRLQQPSSSIRSVSRFIQLLHRTCSSSASAHS
TRAHYQHGQFPESPSLQKVTPSTRRSVHPS
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mRNA from alignment at D-dichotoma_M_contig1022:217195..217586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1022.287.1 ID=mRNA_D-dichotoma_M_contig1022.287.1|Name=mRNA_D-dichotoma_M_contig1022.287.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=392bp|location=Sequence derived from alignment at D-dichotoma_M_contig1022:217195..217586+ (Dictyota dichotoma ODC1387m male)
GTGTTGATCCCAAACGACACTCGCTATCTTGCTCATGCGGACACCAACAG
CATAAAATTGCCTCGCCGCTATGGTACGCAGCATAGTGACAGCGATGTAG
CTTCTGCGACAAGCGGAAGAACAACGTGGTTCCCCATCGAACAACATTGT
CCAGTTTTTCTCCCGTTCTTGTTTTCTTTGTTGCTATCCATTAGCAAGCT
TGTGCACCGGCTCCAACAGCCCTCTTCTAGTATTCGCTCCGTAAGCCGCT
TCATCCAGCTCCTACACAGAACCTGTTCATCATCCGCATCAGCTCACAGT
ACACGAGCGCATTACCAACATGGTCAATTTCCAGAGTCACCGTCGCTCCA
GAAAGTGACTCCTTCCACCCGTAGATCGGTCCACCCATCTCC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1022:217195..217586+

>mRNA_D-dichotoma_M_contig1022.287.1 ID=mRNA_D-dichotoma_M_contig1022.287.1|Name=mRNA_D-dichotoma_M_contig1022.287.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=780bp|location=Sequence derived from alignment at D-dichotoma_M_contig1022:217195..217586+ (Dictyota dichotoma ODC1387m male)
GTGTTGATCCCAAACGACACTCGCTATCTTGCTCATGCGGACACCAACAG
CATAAAATTGCCTCGCCGCTATGGTACGCAGCATAGTGACAGCGATGTAG
CTTCTGCGACAAGCGGAAGAACAACGTGGTTCCCCATCGAACAACATTGT
CCAGTTTTTCTCCCGTTCTTGTTTTCTTTGTTGCTATCCATTAGCAAGCT
TGTGCACCGGCTCCAACAGCCCTCTTCTAGTATTCGCTCCGTAAGCCGCT
TCATCCAGCTCCTACACAGAACCTGTTCATCATCCGCATCAGCTCACAGT
ACACGAGCGCATTACCAACATGGTCAATTTCCAGAGTCACCGTCGCTCCA
GAAAGTGACTCCTTCCACCCGTAGATCGGTCCACCCATCTGTGTTGATCC
CAAACGACACTCGCTATCTTGCTCATGCGGACACCAACAGCATAAAATTG
CCTCGCCGCTATGGTACGCAGCATAGTGACAGCGATGTAGCTTCTGCGAC
AAGCGGAAGAACAACGTGGTTCCCCATCGAACAACATTGTCCAGTTTTTC
TCCCGTTCTTGTTTTCTTTGTTGCTATCCATTAGCAAGCTTGTGCACCGG
CTCCAACAGCCCTCTTCTAGTATTCGCTCCGTAAGCCGCTTCATCCAGCT
CCTACACAGAACCTGTTCATCATCCGCATCAGCTCACAGTACACGAGCGC
ATTACCAACATGGTCAATTTCCAGAGTCACCGTCGCTCCAGAAAGTGACT
CCTTCCACCCGTAGATCGGTCCACCCATCT
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