mRNA_D-dichotoma_M_contig1021.279.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1021.279.1
Unique NamemRNA_D-dichotoma_M_contig1021.279.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1021.279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1021contigD-dichotoma_M_contig1021:58236..58544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.499042-UTR-D-dichotoma_M_contig1021:58235..582441622927508.499042-UTR-D-dichotoma_M_contig1021:58235..58244Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1021 58236..58244 +
1690798008.0836775-UTR-D-dichotoma_M_contig1021:58235..582441690798008.0836775-UTR-D-dichotoma_M_contig1021:58235..58244Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1021 58236..58244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.5103147-CDS-D-dichotoma_M_contig1021:58244..585441622927508.5103147-CDS-D-dichotoma_M_contig1021:58244..58544Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1021 58245..58544 +
1690798008.094926-CDS-D-dichotoma_M_contig1021:58244..585441690798008.094926-CDS-D-dichotoma_M_contig1021:58244..58544Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1021 58245..58544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1021.279.1prot_D-dichotoma_M_contig1021.279.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1021 58245..58544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1021.279.1

>prot_D-dichotoma_M_contig1021.279.1 ID=prot_D-dichotoma_M_contig1021.279.1|Name=mRNA_D-dichotoma_M_contig1021.279.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=100bp
MDKNALRGCPRDTQFPETCKDRDLHISGGRLYRNTGSFRRTSSLAVTFRT
DFSRRAWFAKPMSSQSRQLKRFFSEEVRRVHRHTRHFFRRIVPCGPEVQV
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mRNA from alignment at D-dichotoma_M_contig1021:58236..58544+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1021.279.1 ID=mRNA_D-dichotoma_M_contig1021.279.1|Name=mRNA_D-dichotoma_M_contig1021.279.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=309bp|location=Sequence derived from alignment at D-dichotoma_M_contig1021:58236..58544+ (Dictyota dichotoma ODC1387m male)
CTGTTATTCATGGATAAAAATGCCTTACGCGGTTGCCCCAGAGATACGCA
ATTCCCAGAAACATGCAAGGACCGGGACTTGCATATCTCTGGGGGTCGAC
TGTATCGAAACACCGGGTCATTTCGCCGCACTAGTTCTCTCGCCGTGACG
TTTCGGACAGATTTTTCGAGGCGAGCCTGGTTTGCCAAGCCGATGAGCAG
CCAATCGAGGCAGCTCAAGCGTTTTTTCAGCGAAGAAGTGCGGCGGGTTC
ACCGTCACACCCGGCACTTCTTTCGGAGGATCGTACCTTGCGGTCCAGAG
GTGCAGGTC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1021:58236..58544+

>mRNA_D-dichotoma_M_contig1021.279.1 ID=mRNA_D-dichotoma_M_contig1021.279.1|Name=mRNA_D-dichotoma_M_contig1021.279.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=600bp|location=Sequence derived from alignment at D-dichotoma_M_contig1021:58236..58544+ (Dictyota dichotoma ODC1387m male)
ATGGATAAAAATGCCTTACGCGGTTGCCCCAGAGATACGCAATTCCCAGA
AACATGCAAGGACCGGGACTTGCATATCTCTGGGGGTCGACTGTATCGAA
ACACCGGGTCATTTCGCCGCACTAGTTCTCTCGCCGTGACGTTTCGGACA
GATTTTTCGAGGCGAGCCTGGTTTGCCAAGCCGATGAGCAGCCAATCGAG
GCAGCTCAAGCGTTTTTTCAGCGAAGAAGTGCGGCGGGTTCACCGTCACA
CCCGGCACTTCTTTCGGAGGATCGTACCTTGCGGTCCAGAGGTGCAGGTC
ATGGATAAAAATGCCTTACGCGGTTGCCCCAGAGATACGCAATTCCCAGA
AACATGCAAGGACCGGGACTTGCATATCTCTGGGGGTCGACTGTATCGAA
ACACCGGGTCATTTCGCCGCACTAGTTCTCTCGCCGTGACGTTTCGGACA
GATTTTTCGAGGCGAGCCTGGTTTGCCAAGCCGATGAGCAGCCAATCGAG
GCAGCTCAAGCGTTTTTTCAGCGAAGAAGTGCGGCGGGTTCACCGTCACA
CCCGGCACTTCTTTCGGAGGATCGTACCTTGCGGTCCAGAGGTGCAGGTC
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