mRNA_D-dichotoma_M_contig1020.276.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1020.276.1
Unique NamemRNA_D-dichotoma_M_contig1020.276.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1020.276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1020contigD-dichotoma_M_contig1020:210699..213229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2152
Cds size1614
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1020.276.1prot_D-dichotoma_M_contig1020.276.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1020 211384..212997 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.1039248-UTR-D-dichotoma_M_contig1020:210698..2107921622927508.1039248-UTR-D-dichotoma_M_contig1020:210698..210792Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1020 210699..210792 +
1690798007.8693118-UTR-D-dichotoma_M_contig1020:210698..2107921690798007.8693118-UTR-D-dichotoma_M_contig1020:210698..210792Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1020 210699..210792 +
1622927508.1228127-UTR-D-dichotoma_M_contig1020:211171..2113831622927508.1228127-UTR-D-dichotoma_M_contig1020:211171..211383Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1020 211172..211383 +
1690798007.8792858-UTR-D-dichotoma_M_contig1020:211171..2113831690798007.8792858-UTR-D-dichotoma_M_contig1020:211171..211383Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1020 211172..211383 +
1622927508.1845913-UTR-D-dichotoma_M_contig1020:212997..2132291622927508.1845913-UTR-D-dichotoma_M_contig1020:212997..213229Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1020 212998..213229 +
1690798007.9005525-UTR-D-dichotoma_M_contig1020:212997..2132291690798007.9005525-UTR-D-dichotoma_M_contig1020:212997..213229Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1020 212998..213229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927508.1385303-CDS-D-dichotoma_M_contig1020:211383..2129971622927508.1385303-CDS-D-dichotoma_M_contig1020:211383..212997Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1020 211384..212997 +
1690798007.888945-CDS-D-dichotoma_M_contig1020:211383..2129971690798007.888945-CDS-D-dichotoma_M_contig1020:211383..212997Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1020 211384..212997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1020.276.1

>prot_D-dichotoma_M_contig1020.276.1 ID=prot_D-dichotoma_M_contig1020.276.1|Name=mRNA_D-dichotoma_M_contig1020.276.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=538bp
MVDVTNRRCAAEDCTKRPTFGPRETGGRIYCKDHAKQGMVDVASNLREGG
YGPVVRMCIRENCNKQPTFGVEGSRARLYCKEHAGHGIVDVASKRCAHED
CRKHPTFGVEGTKVRLYCKQHAKDGMVDIANKRCAHEGCNVHPSFGVEGS
KVGVYCKRHSQQGMVDVTSKRCAQEGCSKYPTFGIEGSKVRLFCRKHAEE
GMVDLVSKRCAQEGCSKQPTFGVPGSKAGVFCKQHAKDGMVDVANKRCAF
EGCSKHPRFGVEGSKVRVYCRQHAEDGMVDVASRRCAFEGCCTRPAFGVD
GSKVGVYCKQHATEGMVDVTSKRCAFDGCNKYPRFGAEGSKVRVYCKEHA
EDGMVDVSNKRCPPRDCKNYQDIRSSGAPAAPSAYEERTNVPPLGVMIGI
TTCEVAQCEGLARWGLAGGKPILCGDHGGRYGYVQLVGLGRGSKRSVSSL
SSSSSSSSSPSPSPTSSWSTSSLLSSSPSLSLSMSSSADSRQNFDPHDTS
PTPKRLRRGPAASQQRWLHHEVSETGAMFPYHGEAIV*
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mRNA from alignment at D-dichotoma_M_contig1020:210699..213229+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1020.276.1 ID=mRNA_D-dichotoma_M_contig1020.276.1|Name=mRNA_D-dichotoma_M_contig1020.276.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=2531bp|location=Sequence derived from alignment at D-dichotoma_M_contig1020:210699..213229+ (Dictyota dichotoma ODC1387m male)
GTCAACCTTACCTTTCGGCTGTACTTGGGAAAAGTAGAAATTAGCCCTTA
CGAGGAGTCAACGGAAGGTCTGGTTACATCACTGCCGCATCACAGTGAGT
ATTCTTGTAAACCCCCATGTCACACTGTGACACTGCCTTAGCAGTAGGCG
TTGTCCACAGTCGGTCGGAATTGTCCCAGCGACCCACGCGGACGCACCCC
CTGGCAGGTTCACATTTCCAAATCTTCGCCCTTGCACTGTACCAGAGTTT
CAGCCTTTCCTTTCTCGAGATGACGCAAGGTATGACACACGATGGCTTGG
CGCTGAAAGCTATCCAAATCTGCTGAACATTCATTTGTATTTCCCGCAGG
CCTCTTACTCTGATCGGCTATGAAGTTCGCGCGGTGTGTAACCCATGGTG
TCTCTCAGTGCTCGGCCCATCTCATTTCTCCGCCTTCACCTGTTTTCCCG
TTACTGTACCGCGTTTCCTGCAGGAAATCTCCTCGGCGACTCAGCTATCG
ATGGCGCCGGACAACATCGACTCGGACCATCTTTGATTTCGCTGACATCC
TGGTGGATCCCTCGTGAGGCCGACACACCTCTCACGGATAAGGTCTGTGT
CCATGAGCGCTGCAGCAGGAACCCTACGTTCGGGGTGGAGGGCAGCAAGG
TCCGCCTGTACTGCAAGCGGCATGCCCTCGAGGGGATGGTTGACGTGACA
AACAGACGCTGCGCCGCCGAGGACTGCACGAAGCGTCCCACGTTCGGGCC
GAGGGAAACCGGAGGTCGTATCTACTGCAAGGATCACGCGAAGCAAGGCA
TGGTGGACGTCGCCAGCAACCTCCGTGAAGGCGGCTACGGTCCCGTGGTG
AGGATGTGCATCCGCGAGAACTGCAACAAGCAGCCTACGTTTGGTGTCGA
GGGCAGCAGGGCCCGCCTGTACTGCAAGGAGCACGCGGGCCACGGGATCG
TCGATGTCGCTAGCAAGCGCTGTGCTCATGAGGACTGCCGCAAGCACCCT
ACCTTCGGTGTGGAGGGCACGAAGGTTCGTCTCTACTGCAAGCAGCATGC
GAAAGACGGTATGGTGGACATCGCGAACAAACGCTGTGCTCACGAAGGCT
GCAACGTGCACCCCTCGTTTGGCGTTGAGGGTAGCAAGGTCGGCGTCTAC
TGCAAGCGTCACTCTCAACAGGGCATGGTGGATGTTACCAGCAAACGTTG
CGCTCAAGAAGGTTGCAGCAAGTACCCAACCTTCGGCATCGAGGGCAGTA
AGGTCCGTCTCTTCTGCCGGAAGCATGCGGAGGAGGGTATGGTGGACCTC
GTCAGCAAGCGGTGCGCCCAAGAGGGCTGCAGCAAGCAGCCAACCTTCGG
TGTGCCAGGCAGCAAGGCTGGCGTCTTCTGCAAGCAGCACGCGAAAGACG
GGATGGTGGACGTCGCCAACAAACGCTGCGCCTTCGAGGGTTGCAGCAAA
CACCCACGCTTCGGCGTCGAGGGTAGCAAGGTCCGTGTGTACTGCAGGCA
GCACGCGGAGGATGGCATGGTGGACGTCGCCAGCAGACGGTGCGCCTTCG
AGGGCTGTTGCACGCGTCCCGCCTTCGGGGTGGATGGGAGCAAGGTTGGG
GTGTACTGCAAGCAGCATGCTACGGAAGGCATGGTGGACGTCACGAGCAA
GCGCTGCGCCTTCGACGGCTGCAACAAGTACCCAAGGTTTGGTGCCGAGG
GCAGCAAGGTTCGCGTCTACTGCAAGGAGCATGCCGAGGACGGCATGGTG
GACGTTAGCAACAAGAGGTGCCCTCCCCGGGACTGCAAGAATTACCAGGA
CATCAGATCCTCGGGTGCACCGGCGGCACCCAGTGCCTACGAGGAGCGCA
CGAATGTTCCTCCGCTGGGCGTAATGATCGGCATCACGACGTGCGAGGTG
GCACAGTGTGAGGGTCTAGCCCGATGGGGACTTGCAGGCGGCAAGCCTAT
CCTGTGCGGTGACCACGGCGGTCGTTACGGGTACGTGCAGCTTGTAGGCC
TGGGCCGAGGCTCGAAGAGGTCGGTATCTTCATTGTCATCATCATCGTCG
TCGTCGTCGTCGCCGTCGCCGTCGCCAACGTCGTCTTGGTCGACGTCGTC
CTTGTTGTCATCGTCGCCATCGTTGTCACTCTCGATGTCATCTTCCGCCG
ACAGTCGCCAGAATTTCGACCCGCATGACACATCACCGACGCCAAAGAGG
CTCCGCCGCGGTCCGGCAGCCTCTCAGCAGCGCTGGTTGCACCACGAGGT
TTCGGAGACGGGCGCGATGTTTCCGTATCATGGGGAAGCGATCGTTTAGT
AGCCGTTTTTGATTGTTCCGAGTACGGGAAGGGGGCCTGTCGCCGTATTC
GCTCGATGAGGGATCGGGGTTACAGCAAGCCCCGCGACGAAACAGACAGG
GACGAAAGGTCTTTCCGCCGGAGGATCTGGTTGGATTTTGCCAACGGCAC
TATTATTATTATTATTGTTCATACACTGTACACTCTTGTTAGCTGTAGCA
CGAGGGGCCTGTTGTTGAGGCAGGGGGAGGG
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1020:210699..213229+

>mRNA_D-dichotoma_M_contig1020.276.1 ID=mRNA_D-dichotoma_M_contig1020.276.1|Name=mRNA_D-dichotoma_M_contig1020.276.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=3228bp|location=Sequence derived from alignment at D-dichotoma_M_contig1020:210699..213229+ (Dictyota dichotoma ODC1387m male)
ATGGTTGACGTGACAAACAGACGCTGCGCCGCCGAGGACTGCACGAAGCG
TCCCACGTTCGGGCCGAGGGAAACCGGAGGTCGTATCTACTGCAAGGATC
ACGCGAAGCAAGGCATGGTGGACGTCGCCAGCAACCTCCGTGAAGGCGGC
TACGGTCCCGTGGTGAGGATGTGCATCCGCGAGAACTGCAACAAGCAGCC
TACGTTTGGTGTCGAGGGCAGCAGGGCCCGCCTGTACTGCAAGGAGCACG
CGGGCCACGGGATCGTCGATGTCGCTAGCAAGCGCTGTGCTCATGAGGAC
TGCCGCAAGCACCCTACCTTCGGTGTGGAGGGCACGAAGGTTCGTCTCTA
CTGCAAGCAGCATGCGAAAGACGGTATGGTGGACATCGCGAACAAACGCT
GTGCTCACGAAGGCTGCAACGTGCACCCCTCGTTTGGCGTTGAGGGTAGC
AAGGTCGGCGTCTACTGCAAGCGTCACTCTCAACAGGGCATGGTGGATGT
TACCAGCAAACGTTGCGCTCAAGAAGGTTGCAGCAAGTACCCAACCTTCG
GCATCGAGGGCAGTAAGGTCCGTCTCTTCTGCCGGAAGCATGCGGAGGAG
GGTATGGTGGACCTCGTCAGCAAGCGGTGCGCCCAAGAGGGCTGCAGCAA
GCAGCCAACCTTCGGTGTGCCAGGCAGCAAGGCTGGCGTCTTCTGCAAGC
AGCACGCGAAAGACGGGATGGTGGACGTCGCCAACAAACGCTGCGCCTTC
GAGGGTTGCAGCAAACACCCACGCTTCGGCGTCGAGGGTAGCAAGGTCCG
TGTGTACTGCAGGCAGCACGCGGAGGATGGCATGGTGGACGTCGCCAGCA
GACGGTGCGCCTTCGAGGGCTGTTGCACGCGTCCCGCCTTCGGGGTGGAT
GGGAGCAAGGTTGGGGTGTACTGCAAGCAGCATGCTACGGAAGGCATGGT
GGACGTCACGAGCAAGCGCTGCGCCTTCGACGGCTGCAACAAGTACCCAA
GGTTTGGTGCCGAGGGCAGCAAGGTTCGCGTCTACTGCAAGGAGCATGCC
GAGGACGGCATGGTGGACGTTAGCAACAAGAGGTGCCCTCCCCGGGACTG
CAAGAATTACCAGGACATCAGATCCTCGGGTGCACCGGCGGCACCCAGTG
CCTACGAGGAGCGCACGAATGTTCCTCCGCTGGGCGTAATGATCGGCATC
ACGACGTGCGAGGTGGCACAGTGTGAGGGTCTAGCCCGATGGGGACTTGC
AGGCGGCAAGCCTATCCTGTGCGGTGACCACGGCGGTCGTTACGGGTACG
TGCAGCTTGTAGGCCTGGGCCGAGGCTCGAAGAGGTCGGTATCTTCATTG
TCATCATCATCGTCGTCGTCGTCGTCGCCGTCGCCGTCGCCAACGTCGTC
TTGGTCGACGTCGTCCTTGTTGTCATCGTCGCCATCGTTGTCACTCTCGA
TGTCATCTTCCGCCGACAGTCGCCAGAATTTCGACCCGCATGACACATCA
CCGACGCCAAAGAGGCTCCGCCGCGGTCCGGCAGCCTCTCAGCAGCGCTG
GTTGCACCACGAGGTTTCGGAGACGGGCGCGATGTTTCCGTATCATGGGG
AAGCGATCGTTTAGATGGTTGACGTGACAAACAGACGCTGCGCCGCCGAG
GACTGCACGAAGCGTCCCACGTTCGGGCCGAGGGAAACCGGAGGTCGTAT
CTACTGCAAGGATCACGCGAAGCAAGGCATGGTGGACGTCGCCAGCAACC
TCCGTGAAGGCGGCTACGGTCCCGTGGTGAGGATGTGCATCCGCGAGAAC
TGCAACAAGCAGCCTACGTTTGGTGTCGAGGGCAGCAGGGCCCGCCTGTA
CTGCAAGGAGCACGCGGGCCACGGGATCGTCGATGTCGCTAGCAAGCGCT
GTGCTCATGAGGACTGCCGCAAGCACCCTACCTTCGGTGTGGAGGGCACG
AAGGTTCGTCTCTACTGCAAGCAGCATGCGAAAGACGGTATGGTGGACAT
CGCGAACAAACGCTGTGCTCACGAAGGCTGCAACGTGCACCCCTCGTTTG
GCGTTGAGGGTAGCAAGGTCGGCGTCTACTGCAAGCGTCACTCTCAACAG
GGCATGGTGGATGTTACCAGCAAACGTTGCGCTCAAGAAGGTTGCAGCAA
GTACCCAACCTTCGGCATCGAGGGCAGTAAGGTCCGTCTCTTCTGCCGGA
AGCATGCGGAGGAGGGTATGGTGGACCTCGTCAGCAAGCGGTGCGCCCAA
GAGGGCTGCAGCAAGCAGCCAACCTTCGGTGTGCCAGGCAGCAAGGCTGG
CGTCTTCTGCAAGCAGCACGCGAAAGACGGGATGGTGGACGTCGCCAACA
AACGCTGCGCCTTCGAGGGTTGCAGCAAACACCCACGCTTCGGCGTCGAG
GGTAGCAAGGTCCGTGTGTACTGCAGGCAGCACGCGGAGGATGGCATGGT
GGACGTCGCCAGCAGACGGTGCGCCTTCGAGGGCTGTTGCACGCGTCCCG
CCTTCGGGGTGGATGGGAGCAAGGTTGGGGTGTACTGCAAGCAGCATGCT
ACGGAAGGCATGGTGGACGTCACGAGCAAGCGCTGCGCCTTCGACGGCTG
CAACAAGTACCCAAGGTTTGGTGCCGAGGGCAGCAAGGTTCGCGTCTACT
GCAAGGAGCATGCCGAGGACGGCATGGTGGACGTTAGCAACAAGAGGTGC
CCTCCCCGGGACTGCAAGAATTACCAGGACATCAGATCCTCGGGTGCACC
GGCGGCACCCAGTGCCTACGAGGAGCGCACGAATGTTCCTCCGCTGGGCG
TAATGATCGGCATCACGACGTGCGAGGTGGCACAGTGTGAGGGTCTAGCC
CGATGGGGACTTGCAGGCGGCAAGCCTATCCTGTGCGGTGACCACGGCGG
TCGTTACGGGTACGTGCAGCTTGTAGGCCTGGGCCGAGGCTCGAAGAGGT
CGGTATCTTCATTGTCATCATCATCGTCGTCGTCGTCGTCGCCGTCGCCG
TCGCCAACGTCGTCTTGGTCGACGTCGTCCTTGTTGTCATCGTCGCCATC
GTTGTCACTCTCGATGTCATCTTCCGCCGACAGTCGCCAGAATTTCGACC
CGCATGACACATCACCGACGCCAAAGAGGCTCCGCCGCGGTCCGGCAGCC
TCTCAGCAGCGCTGGTTGCACCACGAGGTTTCGGAGACGGGCGCGATGTT
TCCGTATCATGGGGAAGCGATCGTTTAG
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