mRNA_D-dichotoma_M_contig102.262.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig102.262.1
Unique NamemRNA_D-dichotoma_M_contig102.262.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig102.262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig102contigD-dichotoma_M_contig102:242367..242940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size574
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig102.262.1prot_D-dichotoma_M_contig102.262.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig102 242609..242908 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.543846-UTR-D-dichotoma_M_contig102:242366..2426081622927504.543846-UTR-D-dichotoma_M_contig102:242366..242608Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig102 242367..242608 +
1690798006.270887-UTR-D-dichotoma_M_contig102:242366..2426081690798006.270887-UTR-D-dichotoma_M_contig102:242366..242608Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig102 242367..242608 +
1622927504.5883439-UTR-D-dichotoma_M_contig102:242908..2429401622927504.5883439-UTR-D-dichotoma_M_contig102:242908..242940Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig102 242909..242940 +
1690798006.287507-UTR-D-dichotoma_M_contig102:242908..2429401690798006.287507-UTR-D-dichotoma_M_contig102:242908..242940Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig102 242909..242940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.5659177-CDS-D-dichotoma_M_contig102:242608..2429081622927504.5659177-CDS-D-dichotoma_M_contig102:242608..242908Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig102 242609..242908 +
1690798006.2792501-CDS-D-dichotoma_M_contig102:242608..2429081690798006.2792501-CDS-D-dichotoma_M_contig102:242608..242908Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig102 242609..242908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig102.262.1

>prot_D-dichotoma_M_contig102.262.1 ID=prot_D-dichotoma_M_contig102.262.1|Name=mRNA_D-dichotoma_M_contig102.262.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=100bp
MIWSLLWRLCWRLLGRWIRRRRCSRIMGVCRLPGRCVSSQGGACRAALVI
LSQFQSCPCVFVSMLVLCCVVFVSCREVLLDLNTVYDMDHEDRCVCGRV*
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mRNA from alignment at D-dichotoma_M_contig102:242367..242940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig102.262.1 ID=mRNA_D-dichotoma_M_contig102.262.1|Name=mRNA_D-dichotoma_M_contig102.262.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=574bp|location=Sequence derived from alignment at D-dichotoma_M_contig102:242367..242940+ (Dictyota dichotoma ODC1387m male)
GAAGAGTGAATAGGGAAGAAGGGAGGAGGTGCCGACGGTGATCGATGCAG
ATGCAGATGCGAATTGATGCTGCAACTCGTTCCCCGTTGTTGTCTCTCGC
GTATTTCGAGCTCTATAGTGTCTTTTGGTCGTGCGACGGTGTCGAGCATG
CGAGGCAGTCTCGGGGAGACGGCGGCGGCATATCGGCCCAAGGGTGGTGG
TGATGTTTCGAGCTGGGTGCGTGGAAATCAGGCAGGGGCTGTATGATATG
GAGCTTGTTGTGGAGGTTGTGTTGGAGGCTCCTAGGCCGGTGGATACGTC
GCCGTCGATGCTCTAGAATCATGGGGGTCTGTCGTCTACCCGGCCGTTGT
GTCTCTTCTCAAGGTGGAGCGTGTAGAGCTGCTCTCGTCATCCTGTCCCA
GTTCCAGTCGTGTCCGTGTGTCTTCGTTTCTATGCTTGTGTTGTGTTGTG
TAGTGTTTGTTTCCTGCCGTGAGGTACTCCTTGATCTGAACACAGTATAT
GACATGGACCATGAGGATAGGTGTGTGTGTGGCCGGGTGTGAGTTGGGTG
GGTATAGTCAGAGTGGCTTTCGGC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig102:242367..242940+

>mRNA_D-dichotoma_M_contig102.262.1 ID=mRNA_D-dichotoma_M_contig102.262.1|Name=mRNA_D-dichotoma_M_contig102.262.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=600bp|location=Sequence derived from alignment at D-dichotoma_M_contig102:242367..242940+ (Dictyota dichotoma ODC1387m male)
ATGATATGGAGCTTGTTGTGGAGGTTGTGTTGGAGGCTCCTAGGCCGGTG
GATACGTCGCCGTCGATGCTCTAGAATCATGGGGGTCTGTCGTCTACCCG
GCCGTTGTGTCTCTTCTCAAGGTGGAGCGTGTAGAGCTGCTCTCGTCATC
CTGTCCCAGTTCCAGTCGTGTCCGTGTGTCTTCGTTTCTATGCTTGTGTT
GTGTTGTGTAGTGTTTGTTTCCTGCCGTGAGGTACTCCTTGATCTGAACA
CAGTATATGACATGGACCATGAGGATAGGTGTGTGTGTGGCCGGGTGTGA
ATGATATGGAGCTTGTTGTGGAGGTTGTGTTGGAGGCTCCTAGGCCGGTG
GATACGTCGCCGTCGATGCTCTAGAATCATGGGGGTCTGTCGTCTACCCG
GCCGTTGTGTCTCTTCTCAAGGTGGAGCGTGTAGAGCTGCTCTCGTCATC
CTGTCCCAGTTCCAGTCGTGTCCGTGTGTCTTCGTTTCTATGCTTGTGTT
GTGTTGTGTAGTGTTTGTTTCCTGCCGTGAGGTACTCCTTGATCTGAACA
CAGTATATGACATGGACCATGAGGATAGGTGTGTGTGTGGCCGGGTGTGA
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