mRNA_D-dichotoma_M_contig102.257.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig102.257.1
Unique NamemRNA_D-dichotoma_M_contig102.257.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig102.257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig102contigD-dichotoma_M_contig102:93952..94410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size459
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.4763112-CDS-D-dichotoma_M_contig102:93951..943351622927504.4763112-CDS-D-dichotoma_M_contig102:93951..94335Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig102 93952..94335 +
1690798006.2442665-CDS-D-dichotoma_M_contig102:93951..943351690798006.2442665-CDS-D-dichotoma_M_contig102:93951..94335Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig102 93952..94335 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927504.4929156-UTR-D-dichotoma_M_contig102:94335..944101622927504.4929156-UTR-D-dichotoma_M_contig102:94335..94410Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig102 94336..94410 +
1690798006.2621036-UTR-D-dichotoma_M_contig102:94335..944101690798006.2621036-UTR-D-dichotoma_M_contig102:94335..94410Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig102 94336..94410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig102.257.1prot_D-dichotoma_M_contig102.257.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig102 93952..94335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig102.257.1

>prot_D-dichotoma_M_contig102.257.1 ID=prot_D-dichotoma_M_contig102.257.1|Name=mRNA_D-dichotoma_M_contig102.257.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=128bp
DKIPYSKPHPLLVASPLDAVSRVSASDLSPTSGSSPVAGQLPCTAVLGRR
RCLAHAPSGCLGPTHVAAAPPSPSLKPQTEFSAHVFSQPPFPQEGPRTTL
ADWSPALSHSAVPHRSVPVLACGPLLP*
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mRNA from alignment at D-dichotoma_M_contig102:93952..94410+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig102.257.1 ID=mRNA_D-dichotoma_M_contig102.257.1|Name=mRNA_D-dichotoma_M_contig102.257.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=459bp|location=Sequence derived from alignment at D-dichotoma_M_contig102:93952..94410+ (Dictyota dichotoma ODC1387m male)
GACAAAATCCCCTACAGTAAACCGCATCCGCTCCTCGTGGCATCTCCACT
CGATGCCGTCTCCCGCGTCTCCGCATCCGACTTGTCTCCAACCTCCGGCT
CGTCTCCCGTCGCGGGACAGCTTCCCTGTACGGCTGTTCTTGGGCGTCGA
CGATGCCTTGCACACGCTCCTTCCGGTTGCCTTGGCCCGACTCATGTAGC
GGCAGCTCCCCCTTCTCCTTCGCTAAAGCCGCAAACGGAGTTTTCGGCTC
ACGTCTTCTCTCAGCCCCCATTCCCGCAGGAGGGTCCCCGCACAACGCTT
GCCGACTGGTCGCCAGCTCTATCCCACTCGGCCGTTCCCCACAGGTCGGT
GCCAGTCCTTGCTTGCGGGCCGCTTCTCCCGTAGCCTCGAGCGCTTTACC
TTGCTCCCTCTTCTCCTCCGTAATCTCTACCATCTTGCGCGGGCGTTGCG
GCTGGCTCT
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig102:93952..94410+

>mRNA_D-dichotoma_M_contig102.257.1 ID=mRNA_D-dichotoma_M_contig102.257.1|Name=mRNA_D-dichotoma_M_contig102.257.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=768bp|location=Sequence derived from alignment at D-dichotoma_M_contig102:93952..94410+ (Dictyota dichotoma ODC1387m male)
GACAAAATCCCCTACAGTAAACCGCATCCGCTCCTCGTGGCATCTCCACT
CGATGCCGTCTCCCGCGTCTCCGCATCCGACTTGTCTCCAACCTCCGGCT
CGTCTCCCGTCGCGGGACAGCTTCCCTGTACGGCTGTTCTTGGGCGTCGA
CGATGCCTTGCACACGCTCCTTCCGGTTGCCTTGGCCCGACTCATGTAGC
GGCAGCTCCCCCTTCTCCTTCGCTAAAGCCGCAAACGGAGTTTTCGGCTC
ACGTCTTCTCTCAGCCCCCATTCCCGCAGGAGGGTCCCCGCACAACGCTT
GCCGACTGGTCGCCAGCTCTATCCCACTCGGCCGTTCCCCACAGGTCGGT
GCCAGTCCTTGCTTGCGGGCCGCTTCTCCCGTAGGACAAAATCCCCTACA
GTAAACCGCATCCGCTCCTCGTGGCATCTCCACTCGATGCCGTCTCCCGC
GTCTCCGCATCCGACTTGTCTCCAACCTCCGGCTCGTCTCCCGTCGCGGG
ACAGCTTCCCTGTACGGCTGTTCTTGGGCGTCGACGATGCCTTGCACACG
CTCCTTCCGGTTGCCTTGGCCCGACTCATGTAGCGGCAGCTCCCCCTTCT
CCTTCGCTAAAGCCGCAAACGGAGTTTTCGGCTCACGTCTTCTCTCAGCC
CCCATTCCCGCAGGAGGGTCCCCGCACAACGCTTGCCGACTGGTCGCCAG
CTCTATCCCACTCGGCCGTTCCCCACAGGTCGGTGCCAGTCCTTGCTTGC
GGGCCGCTTCTCCCGTAG
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