mRNA_D-dichotoma_M_contig1019.249.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1019.249.1
Unique NamemRNA_D-dichotoma_M_contig1019.249.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1019.249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1019contigD-dichotoma_M_contig1019:111131..114649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size445
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927503.0334263-CDS-D-dichotoma_M_contig1019:111130..1114391622927503.0334263-CDS-D-dichotoma_M_contig1019:111130..111439Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1019 111131..111439 -
1690798005.4718227-CDS-D-dichotoma_M_contig1019:111130..1114391690798005.4718227-CDS-D-dichotoma_M_contig1019:111130..111439Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1019 111131..111439 -
1622927503.0548832-CDS-D-dichotoma_M_contig1019:114514..1146491622927503.0548832-CDS-D-dichotoma_M_contig1019:114514..114649Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1019 114515..114649 -
1690798005.4899344-CDS-D-dichotoma_M_contig1019:114514..1146491690798005.4899344-CDS-D-dichotoma_M_contig1019:114514..114649Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1019 114515..114649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1019.249.1prot_D-dichotoma_M_contig1019.249.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1019 111131..114649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1019.249.1

>prot_D-dichotoma_M_contig1019.249.1 ID=prot_D-dichotoma_M_contig1019.249.1|Name=mRNA_D-dichotoma_M_contig1019.249.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=148bp
SLTSAALACVQPEARQPGRRIARNMFGSLGDLGFRVEAWKRDEAKYQSCR
PRTSAQRRASSLLRSRNMTAEISGRFSPPCCPRGFRQAAIAATLVAKDNA
HAGTLLTACIAARRNAGDARKAEGVRHRGGESSAGGAATDQRAGGKGS
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mRNA from alignment at D-dichotoma_M_contig1019:111131..114649-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1019.249.1 ID=mRNA_D-dichotoma_M_contig1019.249.1|Name=mRNA_D-dichotoma_M_contig1019.249.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=3519bp|location=Sequence derived from alignment at D-dichotoma_M_contig1019:111131..114649- (Dictyota dichotoma ODC1387m male)
TCGCTAACCTCGGCTGCCCTAGCGTGCGTGCAACCCGAGGCACGACAGCC
AGGGAGGCGAATAGCCAGAAACATGTTCGGATCCCTAGGTGATCTTGGCT
TTCGGGTCGAAGCATGGAAGAGGGATGAGGCTAAGGTAATGAATGATTGT
GTTTTAGGGTATGATCAGGTGATCCGGGGCTTCCCTGCAACCCTTGACGA
AATGCATGATTGAAACTTCCCATCAAGCTCATAGTCGATCGCTCCTCGGT
TCATGGATGCTTGATCTCGGCGCGGATTGTTTCCCGACTTAGGATTTCAG
GATAGTAATGGCTATACCTTGCCTTCGTTAGGTGTCACTGGATCGTACGA
GACACCTTTCAAATCTGGAGTCATGGAGTTTCTCCTCTTACCATCAATGC
TTCCGCTCTGACCTCTGACATCCACGCAGACCTCTAGTAAATGAATCTCC
ACCCGTTAGTTGGAAAATAGCGGAAGTCCGTCAAAGGAAAAAGGAGATAT
TCCATTGTGTGACTTTCCCACGAACTTCTCCATAATCAGGCTTCTATTGC
TCTCCACCTAGGTCCCGCTTACCACGTGGGACGTGATAATTCCGATCTTT
CTCTAGTGTATCAACTCCTCCTTGAATTTCTTTCGTAAAGGTTGATCACC
TGCATGTAACTCTCTCTACCGCCTTTTCTTCATCATCCCAAGGCCCTCAT
AGACCAGTGCCAGTGCCCATGATTGCTTTGGCGTAAGACCGTCAGCGAGA
GATACCTCGAAAACATGTGATCTGCGTGATCGTTGCCGTGATATCGGCCT
AATATTGACAATTGGATGCGTCAATGCTGCTTGGAGGTCCCCCGTGCCCC
AGTGCCTCGAGTGGAGAGTGATGGATCGAGGTCCGTTGCCAACCTCAACT
CATGTGGGCAGTGAGGGACATTTCTTGTCGCCCCTACGCTCTCCTGTAGC
CCTTCCGAGTACTGCTCGATTCAATCTACGTCCTTCAAGCCCTCGAAGTT
CGAGTCGCTAGCGACCTCCGGGTCATCGGATTCCATGTTGACGGGAGATC
GTACCGTATTATCTTCACAAGATACCGAGATATGTGCACCCCGACGAGGA
TGCGGATGTCGCCCAGGCATTGGATCCTACAGATATTCCGCAGATGACCA
TTTCGGCTGCGTGAAGGCGCGTCCTCGGTCAGTTCAGAGCCTTAGCCATG
CGAGGCGAAGGTGGTCACCGATCTGGTTGATTTCCTCTACAACGTAGATA
ATTTGTTGGTCTAGGTGTGGGCGGAGGGCATGTGGGAATGTGCTGCTGCC
GGAATTGCGACGTTCCTAGCAGAGGAGCCAACCAAGCCAACAAGGTGACG
AAGTTTCGAACCACCGAAAACGAACTCAACAGAGAAGGGATTTAAGACAA
GTTGCAGAAGTCTCATTGATGAAGTAACTCACCATCATGTGCAGGTCAAG
CCCAATGGTGTTCTGAGTCGGTAGTTTTGCGCATCGCCAATCCGATACTG
TACCGAAAGGTTGAACTACCTTGCTGTACGGGGATGATGGTGTACCGAGG
GAATTTGTAATTCCGCTTGAAACCAATGCCCGATTGTAGTGTGAATTTTT
GGCGGCGAAATTGGATTTGACATTCCCTTAGGATTCAGTAAACATTGTAC
AGTACGATGGGAAAACCTAGGAAGTATGGACGAGTTTCGTATGACCGATA
TAGTGCGGTTTTCTTCGTTTAGGCGCAGATTGCTGTACGGGGATGTCGTA
TCAAGAGAAGTCGGAATCCCGCTTGAAACCGATGCCCTATGGTAGTGTCG
TTTTTTGTCGCCGAAATTAGGTTTGATATTCTAGAAGGATTCAGCAAACA
TCGTAGAGTAATATGGGAAAACCCACGAAGGTTTCTGACTCCTTCAGTAG
ATTCAGCCTTGAAAGACCTTTTACGGACTATGACTTTAGAGGTAGGGAGG
CGTTTTTTGGAGTTGGGGTTAGAGTTAGCTCCATGATTTTTAGCGTGGTG
TGATTCGAGATTTTTGTTGAGAGGCTTCTATGCTTCTATGCTACTCTTCG
GCATTCCTGAATCATGTCTGGTATCGATTGAAGAAGGTAAAGCAGCACGA
GCAGGCCATGAGTACGGGACAATCGAAAGTGCAAGCCATGAGCAACACGA
CGCAGGTGGCAAGTCACTAACGTCCAACAGTTCACCTGGTGGTCCTTTCA
GTCGCTTGATTTTTGACATGGATATCTACAGTAGGAACTGAGAGATAGAT
GGCATCTATTATACTGTAGGATAGTTAGTTCGCTTTCCTGCGCTTCGTTG
TCTTCTCTTAACCCAAGTCAGGCATGTGTCTTGCATTATCCGACCGTTCC
GTTGCTTAAAGACCTGCCTATTCCCCCCCCCCCCCTCAAAAACGCCTTTA
AGCCTATTGTCCGAACCCCGGAGGGAAATACCAGCCAAGATACAGAATTC
TTGTAGATGGATAATGTTCCATGAAGTGCGTACAAGAAAAATCGATGTAA
TGCATCTGGGAACGTCTTACTCAGGTGTGTTTTGTCAAATCGGTCGGAGT
AATGGGGACGGAATTATACTGAACCCAACTCCGGTTCCGCTAGGCGTCTT
AAAGGTTAAATCTCCTCCTTTGAAGGTGTCGGGCTTGATGTGATGAAATG
TGGCGTAAAGCAACAAAACAAGGATCGAAATTCGAAAATTTGAAAAGGAC
ATGACCGAAAACTACCAAATGCCGTTCTTCGCTGACCTGGCTGGTCCGAG
CCGGTATTCGGGTTTTCGTGGGTAGCCCACTCTACACTGTTCATGGTATA
TCTCCCCTTCTCACATATGCACGCACGGCGTCATACGCGTTTTTCGCTGT
TGCGACGATGTCAGCGGTTTCGGCATGAATGTCGATCCCGATACAGTCGA
CCCGACCCCCCAGATTAAGGCGCCCCCCATGATTAGGACCGCCTCGCCTT
GCCTTGCCTTGCCTTGCCTCCCCTCAGCTGAAGGCCACCACAAAGGTAGG
GATTAAGGATGGACATTATAGGGTTATACCGTCCCTTGGTCAGACTAAGC
CCACCACCACGATCGGCAGTAGCCTTAATCTGAGGTGTCGACTGTACCCT
TCGCACAGGCCACCATTGTTTAACAGGCCATACCGGCGATCACCTGCCCT
CGACACCACCCTCGCGCGATACCTACCGCGCGATGCCTACCGCCATGCGC
CACCCTGCAGTATCAGAGCTGCCGGCCGCGTACCAGCGCGCAGAGGCGCG
CGTCATCGTTATTGAGATCGCGGAACATGACGGCGGAAATCTCCGGTCGA
TTTTCGCCACCCTGTTGCCCGAGGGGATTCCGGCAAGCTGCCATCGCCGC
TACCCTCGTGGCGAAGGATAACGCGCATGCCGGGACGCTCTTGACCGCCT
GCATCGCGGCTCGGCGCAATGCGGGGGATGCAAGGAAGGCGGAAGGGGTA
AGACACCGCGGGGGTGAGAGCAGCGCGGGGGGAGCGGCGACGGACCAGAG
AGCGGGAGGGAAAGGAAGC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1019:111131..114649-

>mRNA_D-dichotoma_M_contig1019.249.1 ID=mRNA_D-dichotoma_M_contig1019.249.1|Name=mRNA_D-dichotoma_M_contig1019.249.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=888bp|location=Sequence derived from alignment at D-dichotoma_M_contig1019:111131..114649- (Dictyota dichotoma ODC1387m male)
TCGCTAACCTCGGCTGCCCTAGCGTGCGTGCAACCCGAGGCACGACAGCC
AGGGAGGCGAATAGCCAGAAACATGTTCGGATCCCTAGGTGATCTTGGCT
TTCGGGTCGAAGCATGGAAGAGGGATGAGGCTAAGTCGCTAACCTCGGCT
GCCCTAGCGTGCGTGCAACCCGAGGCACGACAGCCAGGGAGGCGAATAGC
CAGAAACATGTTCGGATCCCTAGGTGATCTTGGCTTTCGGGTCGAAGCAT
GGAAGAGGGATGAGGCTAAGTATCAGAGCTGCCGGCCGCGTACCAGCGCG
CAGAGGCGCGCGTCATCGTTATTGAGATCGCGGAACATGACGGCGGAAAT
CTCCGGTCGATTTTCGCCACCCTGTTGCCCGAGGGGATTCCGGCAAGCTG
CCATCGCCGCTACCCTCGTGGCGAAGGATAACGCGCATGCCGGGACGCTC
TTGACCGCCTGCATCGCGGCTCGGCGCAATGCGGGGGATGCAAGGAAGGC
GGAAGGGGTAAGACACCGCGGGGGTGAGAGCAGCGCGGGGGGAGCGGCGA
CGGACCAGAGAGCGGGAGGGAAAGGAAGCTATCAGAGCTGCCGGCCGCGT
ACCAGCGCGCAGAGGCGCGCGTCATCGTTATTGAGATCGCGGAACATGAC
GGCGGAAATCTCCGGTCGATTTTCGCCACCCTGTTGCCCGAGGGGATTCC
GGCAAGCTGCCATCGCCGCTACCCTCGTGGCGAAGGATAACGCGCATGCC
GGGACGCTCTTGACCGCCTGCATCGCGGCTCGGCGCAATGCGGGGGATGC
AAGGAAGGCGGAAGGGGTAAGACACCGCGGGGGTGAGAGCAGCGCGGGGG
GAGCGGCGACGGACCAGAGAGCGGGAGGGAAAGGAAGC
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