mRNA_D-dichotoma_M_contig1019.243.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1019.243.1
Unique NamemRNA_D-dichotoma_M_contig1019.243.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
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BLAST of mRNA_D-dichotoma_M_contig1019.243.1 vs. uniprot
Match: D7FU39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU39_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.590e-19
Identity = 52/86 (60.47%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  211 VDHEGK--AQAESTGFCPDIDVCTSR-KPTFLTAYQERSARRTIRPLLRKWGLSARLLDDGPEEVLPRELWESGRYDSVALVEISL 459
            V  EG+  + AE     P      SR +  FLTAYQERSARR+IRPLLRKWG+ AR+L D P+ VLP  LWESGRYDSVAL+EI+L
Sbjct:  595 VGSEGQRTSSAEPADTTPTFGSPFSRSRGVFLTAYQERSARRSIRPLLRKWGMQARVLRDAPQRVLPPALWESGRYDSVALLEITL 680
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BLAST of mRNA_D-dichotoma_M_contig1019.243.1 vs. uniprot
Match: A0A6H5JZN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN0_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 4.140e-19
Identity = 51/78 (65.38%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:  232 QAESTGFCPDIDVCTSR-KPTFLTAYQERSARRTIRPLLRKWGLSARLLDDGPEEVLPRELWESGRYDSVALVEISLS 462
            QA+ST   P      SR +  FLTAYQERSARR+IRPLLRKWG+ AR+L D P+ VLP  LWESGRYDSVAL+EI+L+
Sbjct:  736 QADST---PTFGSPFSRSRGVFLTAYQERSARRSIRPLLRKWGMQARVLHDVPQRVLPPALWESGRYDSVALLEITLT 810
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1019.243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU39_ECTSI1.590e-1960.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZN0_9PHAE4.140e-1965.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1019contigD-dichotoma_M_contig1019:8987..9515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue4e-17
Seed eggNOG ortholog2880.D7FU39
Preferred nameMETTL23
GOsGO:0003008,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0031072,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032259,GO:0032501,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.lysine N-methyltransferase activity
EggNOG OGsKOG2793@1,KOG2793@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-25_000750.1
Exons1
Model size531
Cds size477
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927503.1442778-CDS-D-dichotoma_M_contig1019:8986..94631622927503.1442778-CDS-D-dichotoma_M_contig1019:8986..9463Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1019 8987..9463 +
1690798005.5232368-CDS-D-dichotoma_M_contig1019:8986..94631690798005.5232368-CDS-D-dichotoma_M_contig1019:8986..9463Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1019 8987..9463 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927503.1586506-UTR-D-dichotoma_M_contig1019:9463..95151622927503.1586506-UTR-D-dichotoma_M_contig1019:9463..9515Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1019 9464..9515 +
1690798005.5346882-UTR-D-dichotoma_M_contig1019:9463..95151690798005.5346882-UTR-D-dichotoma_M_contig1019:9463..9515Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1019 9464..9515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1019.243.1prot_D-dichotoma_M_contig1019.243.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1019 8987..9463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1019.243.1

>prot_D-dichotoma_M_contig1019.243.1 ID=prot_D-dichotoma_M_contig1019.243.1|Name=mRNA_D-dichotoma_M_contig1019.243.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=159bp
FIIGADVFYDSADFNAVLATVHLLLAGSVTACHGSKPAKSRDTTPASSGI
TSRRPPSSAAPRRGTVPRVKVDHEGKAQAESTGFCPDIDVCTSRKPTFLT
AYQERSARRTIRPLLRKWGLSARLLDDGPEEVLPRELWESGRYDSVALVE
ISLSGAQR*
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mRNA from alignment at D-dichotoma_M_contig1019:8987..9515+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1019.243.1 ID=mRNA_D-dichotoma_M_contig1019.243.1|Name=mRNA_D-dichotoma_M_contig1019.243.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=529bp|location=Sequence derived from alignment at D-dichotoma_M_contig1019:8987..9515+ (Dictyota dichotoma ODC1387m male)
TTCATCATCGGCGCAGATGTCTTCTACGACTCAGCAGACTTCAACGCCGT
CTTGGCGACCGTTCACCTACTCCTCGCAGGATCTGTAACGGCTTGCCATG
GGTCCAAACCGGCGAAGTCACGTGACACAACTCCGGCTTCTTCCGGGATC
ACTTCGCGTAGACCCCCATCGTCTGCAGCACCGCGTAGAGGAACAGTTCC
TCGCGTAAAGGTCGATCACGAGGGGAAGGCACAAGCCGAGAGTACCGGGT
TTTGTCCCGATATTGACGTTTGTACCTCTAGGAAACCTACATTCTTGACG
GCGTACCAGGAGCGAAGCGCTCGGAGGACCATTCGACCTCTCCTACGAAA
GTGGGGACTATCAGCTCGTCTCTTGGACGATGGACCCGAGGAGGTCTTGC
CGCGTGAGCTGTGGGAAAGTGGGCGTTACGACAGCGTTGCATTGGTCGAA
ATATCGTTGAGTGGAGCTCAACGATAACCTCCGCCAGCAGGATGATAATA
CCGCCTGATCTTCCTCCTCCTCTTCCTCC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1019:8987..9515+

>mRNA_D-dichotoma_M_contig1019.243.1 ID=mRNA_D-dichotoma_M_contig1019.243.1|Name=mRNA_D-dichotoma_M_contig1019.243.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=954bp|location=Sequence derived from alignment at D-dichotoma_M_contig1019:8987..9515+ (Dictyota dichotoma ODC1387m male)
TTCATCATCGGCGCAGATGTCTTCTACGACTCAGCAGACTTCAACGCCGT
CTTGGCGACCGTTCACCTACTCCTCGCAGGATCTGTAACGGCTTGCCATG
GGTCCAAACCGGCGAAGTCACGTGACACAACTCCGGCTTCTTCCGGGATC
ACTTCGCGTAGACCCCCATCGTCTGCAGCACCGCGTAGAGGAACAGTTCC
TCGCGTAAAGGTCGATCACGAGGGGAAGGCACAAGCCGAGAGTACCGGGT
TTTGTCCCGATATTGACGTTTGTACCTCTAGGAAACCTACATTCTTGACG
GCGTACCAGGAGCGAAGCGCTCGGAGGACCATTCGACCTCTCCTACGAAA
GTGGGGACTATCAGCTCGTCTCTTGGACGATGGACCCGAGGAGGTCTTGC
CGCGTGAGCTGTGGGAAAGTGGGCGTTACGACAGCGTTGCATTGGTCGAA
ATATCGTTGAGTGGAGCTCAACGATAATTCATCATCGGCGCAGATGTCTT
CTACGACTCAGCAGACTTCAACGCCGTCTTGGCGACCGTTCACCTACTCC
TCGCAGGATCTGTAACGGCTTGCCATGGGTCCAAACCGGCGAAGTCACGT
GACACAACTCCGGCTTCTTCCGGGATCACTTCGCGTAGACCCCCATCGTC
TGCAGCACCGCGTAGAGGAACAGTTCCTCGCGTAAAGGTCGATCACGAGG
GGAAGGCACAAGCCGAGAGTACCGGGTTTTGTCCCGATATTGACGTTTGT
ACCTCTAGGAAACCTACATTCTTGACGGCGTACCAGGAGCGAAGCGCTCG
GAGGACCATTCGACCTCTCCTACGAAAGTGGGGACTATCAGCTCGTCTCT
TGGACGATGGACCCGAGGAGGTCTTGCCGCGTGAGCTGTGGGAAAGTGGG
CGTTACGACAGCGTTGCATTGGTCGAAATATCGTTGAGTGGAGCTCAACG
ATAA
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