mRNA_D-dichotoma_M_contig1018.240.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1018.240.1
Unique NamemRNA_D-dichotoma_M_contig1018.240.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1018.240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1018contigD-dichotoma_M_contig1018:158214..158690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1018.240.1prot_D-dichotoma_M_contig1018.240.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1018 158260..158562 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927502.1124735-UTR-D-dichotoma_M_contig1018:158213..1582591622927502.1124735-UTR-D-dichotoma_M_contig1018:158213..158259Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1018 158214..158259 +
1690798004.8871076-UTR-D-dichotoma_M_contig1018:158213..1582591690798004.8871076-UTR-D-dichotoma_M_contig1018:158213..158259Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1018 158214..158259 +
1622927502.1414218-UTR-D-dichotoma_M_contig1018:158562..1586901622927502.1414218-UTR-D-dichotoma_M_contig1018:158562..158690Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1018 158563..158690 +
1690798004.9157174-UTR-D-dichotoma_M_contig1018:158562..1586901690798004.9157174-UTR-D-dichotoma_M_contig1018:158562..158690Dictyota dichotoma ODC1387m maleUTRD-dichotoma_M_contig1018 158563..158690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927502.1244373-CDS-D-dichotoma_M_contig1018:158259..1585621622927502.1244373-CDS-D-dichotoma_M_contig1018:158259..158562Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1018 158260..158562 +
1690798004.9045599-CDS-D-dichotoma_M_contig1018:158259..1585621690798004.9045599-CDS-D-dichotoma_M_contig1018:158259..158562Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1018 158260..158562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1018.240.1

>prot_D-dichotoma_M_contig1018.240.1 ID=prot_D-dichotoma_M_contig1018.240.1|Name=mRNA_D-dichotoma_M_contig1018.240.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=101bp
MKEDEDRTVTPAHENRNAIARSPIHLSLESIEPTSHYVTSRTSGNQYLRP
TATASDMQQVSCKTRPVLLQYYRCLISSPENLAQRPACVRDFIDVGFHQD
*
back to top

mRNA from alignment at D-dichotoma_M_contig1018:158214..158690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1018.240.1 ID=mRNA_D-dichotoma_M_contig1018.240.1|Name=mRNA_D-dichotoma_M_contig1018.240.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=477bp|location=Sequence derived from alignment at D-dichotoma_M_contig1018:158214..158690+ (Dictyota dichotoma ODC1387m male)
GGGCATATACTTTCTTCCAATCTCGTTGTTTTTATCGAGATGACCCATGA
AGGAGGATGAGGATCGGACGGTCACTCCGGCACATGAAAATCGTAACGCA
ATCGCCCGTTCACCTATTCACTTGAGTTTAGAGTCCATCGAACCAACGAG
CCATTATGTTACGAGTAGAACATCTGGAAATCAATACCTTCGTCCCACCG
CCACCGCCAGCGACATGCAACAAGTCTCCTGCAAAACCAGACCGGTCCTG
CTGCAATACTACAGGTGTTTAATCTCGAGCCCGGAAAATCTCGCACAACG
TCCAGCGTGCGTGCGTGATTTCATCGACGTCGGATTCCATCAGGATTGAT
CAGAGGTAACCCACGGACACGACAAGGGAAAATGGGACGGAGCTCGTCCG
ATCGCATCTAAGAGCTGGTCCTCCATTGGAGCTCCCCTACCCATTGGCGC
TCCGGTTGCATGACTACCCTGGGATCC
back to top

Coding sequence (CDS) from alignment at D-dichotoma_M_contig1018:158214..158690+

>mRNA_D-dichotoma_M_contig1018.240.1 ID=mRNA_D-dichotoma_M_contig1018.240.1|Name=mRNA_D-dichotoma_M_contig1018.240.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=606bp|location=Sequence derived from alignment at D-dichotoma_M_contig1018:158214..158690+ (Dictyota dichotoma ODC1387m male)
ATGAAGGAGGATGAGGATCGGACGGTCACTCCGGCACATGAAAATCGTAA
CGCAATCGCCCGTTCACCTATTCACTTGAGTTTAGAGTCCATCGAACCAA
CGAGCCATTATGTTACGAGTAGAACATCTGGAAATCAATACCTTCGTCCC
ACCGCCACCGCCAGCGACATGCAACAAGTCTCCTGCAAAACCAGACCGGT
CCTGCTGCAATACTACAGGTGTTTAATCTCGAGCCCGGAAAATCTCGCAC
AACGTCCAGCGTGCGTGCGTGATTTCATCGACGTCGGATTCCATCAGGAT
TGAATGAAGGAGGATGAGGATCGGACGGTCACTCCGGCACATGAAAATCG
TAACGCAATCGCCCGTTCACCTATTCACTTGAGTTTAGAGTCCATCGAAC
CAACGAGCCATTATGTTACGAGTAGAACATCTGGAAATCAATACCTTCGT
CCCACCGCCACCGCCAGCGACATGCAACAAGTCTCCTGCAAAACCAGACC
GGTCCTGCTGCAATACTACAGGTGTTTAATCTCGAGCCCGGAAAATCTCG
CACAACGTCCAGCGTGCGTGCGTGATTTCATCGACGTCGGATTCCATCAG
GATTGA
back to top