mRNA_D-dichotoma_M_contig1018.236.1 (mRNA) Dictyota dichotoma ODC1387m male
Overview
Homology
BLAST of mRNA_D-dichotoma_M_contig1018.236.1 vs. uniprot
Match: A0A6H5K5G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G3_9PHAE) HSP 1 Score: 669 bits (1727), Expect = 4.430e-222 Identity = 476/1031 (46.17%), Postives = 553/1031 (53.64%), Query Frame = 3 Query: 318 QTRSPALPSFSGLTAAVNEARD----GSSNNAGDSRPDSRGEGRTARRDAVETKRRLPPAASSSESSSHETYGRTVVTSTLTKSTYSHHP------GSPSTVLLQDTLTPLLDEVDVLFERSKEIVATVKAQGNG-----EDVEVEIMERMADAWQEIESKNARHDTSHKLNREKPMFCMDSLGKRIKAALLCKTLPKGDNPAEYVNGADNAPSRNLVTAIKLAGYVVHSGTGGKVSAVDGDGREPPSKYTKEEFLNNVLPRASESQPTRILNELRQLSCRLVASGIAKGLLTEQDLPQIRRILVGRFQDGGMHFLGSGDTAFARFMAVASNAHRLLERGEIDDFVVFHERVVKLVGMCRNRVRRAAYATSKNMLVHSGG-ARFSGAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQPXXXXXXXXXXXQQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPSAAGLLPWRNGETAAAPPTTSSGGAHVRGALPV-FPGQAHYDMLSSAATST-TPYAKAP-LENG---GAAFGTALGANAGG-LGRAPMTMLAVDTLQ--SQTANHGLPVA-------------------LPPAAEGAHVTSS-----------------FHDHNALSAAAPEILTQMGYRRPQSYGPDGGWSNGVARPQVGGIARMEN-----------------------------------GPPVLVLQPGWGVTLPPYFLGLMDVKRPRNVPVKMLWELRAEPVAGATDLVLVKMKQVPGYMDFLAEIMPADMLKFRWSLRYWETLQGKHENRAFLEETALAVHRLGFVPMPPGSVLRATYDEMLAHGRFPEL--------------------------------------------------------------APPHAMAAS----------VAPGNPELAHGHALT-HSEG-MMHATPLGVPPVAAGVLRDLHRGGT 2900 Q ++ ALPSFSGL+ AVN+ARD S N + + + ++R + + + ++ + GR + G+ +LLQDTL+PLL+EVD LFERSK+IVA++KA G G +DVEVEIMERMA+AWQ IE+KNARHDTSHKL+REKPMFCMDSLGKRIKAALLCKTLP DNPAEYVNG+ NAPSRNLVTAIKLAGYVVH GTGGKVSAVDGDGREPPSKYTKEEF NNVLPRA+E+QP RILNELRQLSCRLVASGIAKGLL ++DLP+IR+ILV RF+DGGMHFL GD AFARF+ VA+NAH+LLERG+IDDFV FHERVVKLVGMCRNRVRRAAYATSK+ML + G R K+ P Q XXXXXXXXXXXXXXXXXX S GL+PWRNG+ A P G H R P PG +D L++ S P+ K P LENG G + G N GG + RA M+ML + S N L +P ++ V + FHDHNALSAAAPEILTQMGYRR ++GP+G W A VGG AR + PPVLVLQPGWGVTLPPYFLG+MD KRPR+VPVKMLWELRAEP+ GA D VLV+M+QVPGY+DFLAEIMPADMLKFRWSLR WETLQGK+E+RA LEE A A+ LG VPMP GS LR YD+ +A + A P+ AA+ P NPE A HA H+EG + A +GVPPVAAGVLRDLHR GT Sbjct: 4 QPQARALPSFSGLSLAVNDARDYENSRGSRNGSEVQXXXXXXXXXXXXXGISSRRGRHASPTETSANGFDGGGRNLXXXXXXXXXXXXXXXXXKASGATGALLLQDTLSPLLEEVDALFERSKDIVASLKAPGGGNKPQEDDVEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPAEYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKILVSRFEDGGMHFLAGGDAAFARFIGVAANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSMLAQANGNGRLLSVKSSSASRRKS--------------------------------------------------------------------------------------APLPQLPPLPXXXXXXXXXXXXXXXXXXT----------------STPGLMPWRNGDPPVAMPAAP--GVHGRAPPPPGLPGHGQHDALTATGASPGAPFGKPPPLENGSSVGFVGPPSAGFNNGGAIIRAAMSMLPPGGMPTPSHDPNDRLQXXXXXXXXXXXXXXXXXXXXXMPFVSQAPGVANXXXXXXXXXXXXXXXXXXFHDHNALSAAAPEILTQMGYRRAPAFGPEGIWGANDAGASVGGGARGHSVAPXXXXXXXPAAMPVAPAGVAPXXAPGGAAARVDSPPVLVLQPGWGVTLPPYFLGMMDPKRPRSVPVKMLWELRAEPLPGAADSVLVEMRQVPGYLDFLAEIMPADMLKFRWSLRCWETLQGKNESRALLEEAAAALSHLGLVPMPLGSSLRLVYDDFVARRAVAAIGVNSGSINSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPNNTAANNTADANSTNASTPVNPETARSHAAAGHAEGEALRAGSVGVPPVAAGVLRDLHREGT 930
BLAST of mRNA_D-dichotoma_M_contig1018.236.1 vs. uniprot
Match: D7FRL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL6_ECTSI) HSP 1 Score: 456 bits (1172), Expect = 6.150e-149 Identity = 256/380 (67.37%), Postives = 296/380 (77.89%), Query Frame = 3 Query: 318 QTRSPALPSFSGLTAAVNEARDGSSNNAGDSRPDSRGEGRTARRDAVE-----------TKRRLPPAASSSESSSH--ETYGRTVVTSTLTKSTYSHHPGSPST--VLLQDTLTPLLDEVDVLFERSKEIVATVKAQGNG-----EDVEVEIMERMADAWQEIESKNARHDTSHKLNREKPMFCMDSLGKRIKAALLCKTLPKGDNPAEYVNGADNAPSRNLVTAIKLAGYVVHSGTGGKVSAVDGDGREPPSKYTKEEFLNNVLPRASESQPTRILNELRQLSCRLVASGIAKGLLTEQDLPQIRRILVGRFQDGGMHFLGSGDTAFARFMAVASNAHRLLERGEIDDFVVFHERVVKLVGMCRNRVRRAAYATSKNML 1397 Q ++ ALPSFSGL++AVN+ARD N+ SR S + + RR A+ +SE+ ++ + GR + S S S +T +LLQDTL+PLL+EVD LFERSK+IVA++KA G G +DVEVEIMERMA+AWQ IE+KNARHDTSHKL+REKPMFCMDSLGKRIKAALLCKTLP DNPA YVNG+ NAPSRNLVTAIKLAGYVVH GTGGKVSAVDGDGREPPSKYTKEEF NNVLPRA+E+QP RILNELRQLSCRLVASGIAKGLL ++DLP+IR+IL+ RF+DGGMHFL GD AFARF+ V +NAH+LLERG+IDDFV FHERVVKLVGMCRNRVRRAAYATSK+ML Sbjct: 4 QPQARALPSFSGLSSAVNDARD--YENSRGSRNGSEVQXXXXXXXXXXXXXXXXVATGISSRRGRHASPTSETPANGFDGGGRNLSGSXXXXXXPSSSKASGATGALLLQDTLSPLLEEVDALFERSKDIVASLKAPGGGNKPQEDDVEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPAVYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKILISRFEDGGMHFLAGGDAAFARFIGVTANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSML 381 The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1018.236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-dichotoma_M_contig1018.236.1 >prot_D-dichotoma_M_contig1018.236.1 ID=prot_D-dichotoma_M_contig1018.236.1|Name=mRNA_D-dichotoma_M_contig1018.236.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=863bp MSQTRSPALPSFSGLTAAVNEARDGSSNNAGDSRPDSRGEGRTARRDAVEback to top mRNA from alignment at D-dichotoma_M_contig1018:71760..84794- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-dichotoma_M_contig1018.236.1 ID=mRNA_D-dichotoma_M_contig1018.236.1|Name=mRNA_D-dichotoma_M_contig1018.236.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=13035bp|location=Sequence derived from alignment at D-dichotoma_M_contig1018:71760..84794- (Dictyota dichotoma ODC1387m male)back to top Coding sequence (CDS) from alignment at D-dichotoma_M_contig1018:71760..84794- >mRNA_D-dichotoma_M_contig1018.236.1 ID=mRNA_D-dichotoma_M_contig1018.236.1|Name=mRNA_D-dichotoma_M_contig1018.236.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=5178bp|location=Sequence derived from alignment at D-dichotoma_M_contig1018:71760..84794- (Dictyota dichotoma ODC1387m male)back to top |