mRNA_D-dichotoma_M_contig1017.232.1 (mRNA) Dictyota dichotoma ODC1387m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-dichotoma_M_contig1017.232.1
Unique NamemRNA_D-dichotoma_M_contig1017.232.1
TypemRNA
OrganismDictyota dichotoma ODC1387m male (Dictyota dichotoma ODC1387m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-dichotoma_M_contig1017.232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-dichotoma_M_contig1017contigD-dichotoma_M_contig1017:92750..96058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Dictyota dichotoma ODC1387m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size722
Cds size720
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-dichotoma_M_contig1017.232.1prot_D-dichotoma_M_contig1017.232.1Dictyota dichotoma ODC1387m malepolypeptideD-dichotoma_M_contig1017 92750..96058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927501.158299-CDS-D-dichotoma_M_contig1017:92749..930101622927501.158299-CDS-D-dichotoma_M_contig1017:92749..93010Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1017 92750..93010 +
1690798004.1929095-CDS-D-dichotoma_M_contig1017:92749..930101690798004.1929095-CDS-D-dichotoma_M_contig1017:92749..93010Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1017 92750..93010 +
1622927501.174811-CDS-D-dichotoma_M_contig1017:95178..954731622927501.174811-CDS-D-dichotoma_M_contig1017:95178..95473Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1017 95179..95473 +
1690798004.2034595-CDS-D-dichotoma_M_contig1017:95178..954731690798004.2034595-CDS-D-dichotoma_M_contig1017:95178..95473Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1017 95179..95473 +
1622927501.188018-CDS-D-dichotoma_M_contig1017:95894..960581622927501.188018-CDS-D-dichotoma_M_contig1017:95894..96058Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1017 95895..96058 +
1690798004.2138968-CDS-D-dichotoma_M_contig1017:95894..960581690798004.2138968-CDS-D-dichotoma_M_contig1017:95894..96058Dictyota dichotoma ODC1387m maleCDSD-dichotoma_M_contig1017 95895..96058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-dichotoma_M_contig1017.232.1

>prot_D-dichotoma_M_contig1017.232.1 ID=prot_D-dichotoma_M_contig1017.232.1|Name=mRNA_D-dichotoma_M_contig1017.232.1|organism=Dictyota dichotoma ODC1387m male|type=polypeptide|length=240bp
PEKGVSARETGRSCAAPSRRVSSDGSNILRGGDVVRLIHLSSTGFLSHDH
FDEVLKGMEDVEPGLVRGASALQQPPPPPEALQDEDADGDGEAKTNTESG
GHSDSAAQECSGHGGSADSHGSGSVALGGGGGHVEDARRLFRHPSLHISG
IPDQRRDRRNQNSNCLWQIERIDFADGGRHLLRNPDVHHLGNTAAELDGE
DDELMLKETVRIRHFASMRYLCVLQAENCDWNNMYPLKCD
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mRNA from alignment at D-dichotoma_M_contig1017:92750..96058+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-dichotoma_M_contig1017.232.1 ID=mRNA_D-dichotoma_M_contig1017.232.1|Name=mRNA_D-dichotoma_M_contig1017.232.1|organism=Dictyota dichotoma ODC1387m male|type=mRNA|length=3309bp|location=Sequence derived from alignment at D-dichotoma_M_contig1017:92750..96058+ (Dictyota dichotoma ODC1387m male)
CCGGAAAAGGGCGTCTCGGCGCGGGAAACCGGGCGTTCTTGCGCCGCCCC
TAGCCGTCGGGTGTCGTCGGACGGATCAAACATCTTGCGCGGGGGAGACG
TGGTGCGCCTGATCCACCTCAGCTCGACGGGATTCCTGTCTCACGATCAC
TTCGACGAGGTCTTGAAGGGTATGGAGGATGTCGAACCGGGCCTGGTTCG
GGGGGCCTCGGCTTTGCAGCAGCCGCCGCCGCCGCCTGAGGCACTTCAGG
ATGAAGATGCGGTGAGTGGTGATTCCGCTGCCGTGAATATATCCGTTGCG
GGAGGATTCCATCCATCTGTCAGAGCGAGGGAGCATGGAGTCTTCCTCGT
TGCGAACCTTCTGCTCTTTTTCTTTTCTTTTTTTGGGGGGGAGAAGACGA
AAAAAAGGTTATTGCCGGTGTTTTTGGGGACAAAATCGGTTAGTACAGTA
CCAGGAGTTCTGTACACAGAATGAGCCAAATCCTGCCGTCCTGTTGATAG
GAAAAGCACTGCAGCTGCAGTCGTTGTAACTTAAAAAAAGATGGAGATTC
GAACGGGTGCATAGTAAGTCCAAGTAATATTGGTCTAAATATACAACTTT
TACAGCTTCAGGTACAGTCGAACCTCCAGATTAAGACACCCATGGGACGT
GCCTTAATCTAAAAGATGCCTTAGTCTAGCCAAGAGATGGCCAAAAAAAT
TCGGAATGAAACACAGAAAACTACCACACACCCGATGTCCGTATAGTGCG
ATCTTCTTGCCGCACAGGGATACCATTGATAATCATGTTATGTCATGAAT
TTCTGTATCATCGAAACCCAGGTGGAGCTGAAATTCCTCAGGCTAGTACG
ACCCTTGGGTGTGCCTTAATCTATAGGGGGCCCTAATGAGGGGGTGTCTT
AATCTGGAGGTTCGGCTGAATTACGTCCCACCGCAATAGTTACTGTAGAT
CCACTGTATCATGTTCCATTAGAGCGGTGTACCACGGAAGGAAAAACGGG
GGATGACATGCTTTTTGTGCATCTGCAATCCAGTCGGCGGCAGGGAGGGA
AACATCAGCTCGTGATGTTATGTTGTCATTCATCATCAGGATGCTTGGCT
CTCTTTAGTCTCCCTCGTTAGAAATAGAACCGTGAACACGTTGCAGGGGC
GGCGCGTGGTGAAAACGAAAAGGGGAAGACGTGTTGAGAGTGAGTGAGCG
TCTTTGCACCAAACGGACGACATGTTTTGGCCCATTGCGTACACGATTTA
TGGTACTAACCGATTTTGTCCTCAAAAATCACCGTTGATTACCGATTTTG
TCTCCCCCCCCCTTTTTTGTCTTTTTAAAATCAATTTTGGCGATGTTTTG
TTGTACTTTATTGAACACGTGGGAGTCTGGGAAGGAGATTTTGCTCTACA
ATACCCTTATCAACCGGTCACGTCGTAAATGCATCTCGAGGAGCTAAAGC
CAGGTCTGCTCTCTGCTGATGCGTAGGTTACTTACTTTATCCCTCAGCAG
AGTTGATTGCGAACATCCCGAGCACCTGGAATCATCAACCATCGTCTGTG
ACGGGACCGTTTGTGGCCGGGAACAGGACAATTGCCTCCAGTTTCGGCAA
ACCCATGGTTACCATCGGGAGCTCGAGGGCAGAGACGCCCACATGGACAC
GCTTCGATCACCCCGTCCCTATCTCCTTCTTCCTTCTGGGGCCGCTGTGA
GCTCATGCCCCGTACGAATACAAATACTCGCTTACGTTTCGAGCCTGCTC
TTCGAAATCAGTACTTCCCTTTTCGTGTGTCACATGGGGGGAATTAATCT
TTCAACAATAGTAACGGATCCGGCAGGGCACCGGTCCCCTTCCCTTCGTC
TGTCTGTCTTGGGATAGCACAGATCGAGAGGTGGTGTATCTTACATGATG
TCGACGACGAGATTCGAAGTCACGCGGGCATGACCCAACAGGTTGTTTTA
TTTGGTTGTTTTGTCGTCGTTTACTTTTTTTTTTTTCTTCGCTGTGCATT
TTTTTTTTTCTTTTCTCGTCTCAATTCATTTTTCTGCTTCGTTGAATGAA
CTCCGTGTTTTTCCAGTTTCCTGCTTTGTATTTTTTTTTCTCATTATCGC
TGTTGTTCGACTTCGAAAGTAACCCTCTCTGCAGTTTGATGCTGTCCTGG
AGTTATTCGCTTCCCCGCCCCCCTTTTTCGTGTGCTGTTTGACTTTCTTG
TTGTTGTTGCCTTCATGACTTTCCTTCTTCGCTATTCTCTGCATGCATCT
CCTGGAGAGCGATCAGCAGCGCGTGCGAGCCTAGACGATCCTCCTTCCCT
ATGGTTGCGGGAAAAGAACGAAAGAAGTTCGGCGCATCGAGCCTTCCCAA
GCTCGACTTGACTGATGCACTCCTGTCCCGATCGTGTTGTCCCCGCTTCA
CCTCGCTGCGTCTGGCACCGGTGGCGCAGGACGGGGACGGAGAAGCCAAA
ACCAACACGGAGAGCGGAGGGCATTCCGACAGTGCCGCACAAGAGTGTAG
CGGGCATGGGGGCAGCGCTGACAGCCATGGCAGCGGGAGTGTTGCGCTTG
GCGGGGGTGGAGGCCACGTCGAGGATGCCCGGCGACTGTTCCGCCATCCG
TCGCTCCACATCTCCGGTATCCCAGATCAACGTCGGGACCGGCGAAACCA
AAATAGTAACTGCCTTTGGCAGATCGAACGCATCGATTTCGCCGATGGCG
GACGGCATCTCCTCCGCAATCCCGGTACGATTCAACGTCCGGCTTTTATC
GCGAAGCCTACCGCCGAGATTTTTTACCGTATGAAAACGCAACGCGTTTC
AGTATGCGGGTCTGCCACCCACCGAGCTGAGTCGGAGAGGACGGCACGGA
TGAAGCCTGGCCCTAGTTTGGGCCCTGTATCGGCGGGATCCCGGGGTACC
GCGCCTGAACTATTTTCAGGAACATTCTGGTTTCGGGATTGAAGGCGGAT
GAATCGGTTTCTGCACGAGACTGGGGCTTTGTTCTTGGTTCATTTCCCAG
GTCTTGTGGTTATTCCTCGGCCGTTGCTTCGAGTCTTCCCTCTCCTGGTT
GACCGATAGACGGTCGGTGCTTGTTTCAGCTTGACCCGTTTAGCTCTTTG
CCTGCGCCATCGACCGGTCCACCATTGTCGCCGTTGGCCTCGCAGACGTA
CATCACCTTGGCAATACCGCCGCGGAGCTGGACGGCGAAGACGACGAATT
AATGTTGAAGGAGACGGTGCGCATCCGGCACTTCGCGTCCATGAGATACC
TCTGCGTGCTCCAGGCCGAGAATTGCGATTGGAACAATATGTATCCCCTG
AAGTGCGAC
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Coding sequence (CDS) from alignment at D-dichotoma_M_contig1017:92750..96058+

>mRNA_D-dichotoma_M_contig1017.232.1 ID=mRNA_D-dichotoma_M_contig1017.232.1|Name=mRNA_D-dichotoma_M_contig1017.232.1|organism=Dictyota dichotoma ODC1387m male|type=CDS|length=1440bp|location=Sequence derived from alignment at D-dichotoma_M_contig1017:92750..96058+ (Dictyota dichotoma ODC1387m male)
CCGGAAAAGGGCGTCTCGGCGCGGGAAACCGGGCGTTCTTGCGCCGCCCC
TAGCCGTCGGGTGTCGTCGGACGGATCAAACATCTTGCGCGGGGGAGACG
TGGTGCGCCTGATCCACCTCAGCTCGACGGGATTCCTGTCTCACGATCAC
TTCGACGAGGTCTTGAAGGGTATGGAGGATGTCGAACCGGGCCTGGTTCG
GGGGGCCTCGGCTTTGCAGCAGCCGCCGCCGCCGCCTGAGGCACTTCAGG
ATGAAGATGCGCCGGAAAAGGGCGTCTCGGCGCGGGAAACCGGGCGTTCT
TGCGCCGCCCCTAGCCGTCGGGTGTCGTCGGACGGATCAAACATCTTGCG
CGGGGGAGACGTGGTGCGCCTGATCCACCTCAGCTCGACGGGATTCCTGT
CTCACGATCACTTCGACGAGGTCTTGAAGGGTATGGAGGATGTCGAACCG
GGCCTGGTTCGGGGGGCCTCGGCTTTGCAGCAGCCGCCGCCGCCGCCTGA
GGCACTTCAGGATGAAGATGCGGACGGGGACGGAGAAGCCAAAACCAACA
CGGAGAGCGGAGGGCATTCCGACAGTGCCGCACAAGAGTGTAGCGGGCAT
GGGGGCAGCGCTGACAGCCATGGCAGCGGGAGTGTTGCGCTTGGCGGGGG
TGGAGGCCACGTCGAGGATGCCCGGCGACTGTTCCGCCATCCGTCGCTCC
ACATCTCCGGTATCCCAGATCAACGTCGGGACCGGCGAAACCAAAATAGT
AACTGCCTTTGGCAGATCGAACGCATCGATTTCGCCGATGGCGGACGGCA
TCTCCTCCGCAATCCCGGACGGGGACGGAGAAGCCAAAACCAACACGGAG
AGCGGAGGGCATTCCGACAGTGCCGCACAAGAGTGTAGCGGGCATGGGGG
CAGCGCTGACAGCCATGGCAGCGGGAGTGTTGCGCTTGGCGGGGGTGGAG
GCCACGTCGAGGATGCCCGGCGACTGTTCCGCCATCCGTCGCTCCACATC
TCCGGTATCCCAGATCAACGTCGGGACCGGCGAAACCAAAATAGTAACTG
CCTTTGGCAGATCGAACGCATCGATTTCGCCGATGGCGGACGGCATCTCC
TCCGCAATCCCGACGTACATCACCTTGGCAATACCGCCGCGGAGCTGGAC
GGCGAAGACGACGAATTAATGTTGAAGGAGACGGTGCGCATCCGGCACTT
CGCGTCCATGAGATACCTCTGCGTGCTCCAGGCCGAGAATTGCGATTGGA
ACAATATGTATCCCCTGAAGTGCGACACGTACATCACCTTGGCAATACCG
CCGCGGAGCTGGACGGCGAAGACGACGAATTAATGTTGAAGGAGACGGTG
CGCATCCGGCACTTCGCGTCCATGAGATACCTCTGCGTGCTCCAGGCCGA
GAATTGCGATTGGAACAATATGTATCCCCTGAAGTGCGAC
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